Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1814_(erg3)_2056528_2057430
DateFri Aug 2 13:30:42 BST 2019
Unique Job IDd05881b6dae93177
SequenceMRDPVLFAIP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.904 Y:56.618 Z:39.271
Model (left) based on template c4zr0A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:ceramide very long chain fatty acid hydroxylase scs7;
PDBTitle: full length scs7p (only hydroxylase domain visible)
Confidence and coverage
Confidence: 99.9% Coverage: 56%
167 residues ( 56% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4zr0A_
99.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:ceramide very long chain fatty acid hydroxylase scs7;
PDBTitle: full length scs7p (only hydroxylase domain visible)
2c2yf3F_
34.1 29
PDB header:hydrolase
Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase;
PDBTitle: crystal structure of dr2231, the mazg-like protein from deinococcus2 radiodurans, complex with manganese
3c4hdtA_
30.4 15
PDB header:isomerase
Chain: A: PDB Molecule:3-hydroxyisobutyryl-coa hydrolase;
PDBTitle: crystal structure of a carnitinyl-coa dehydratase from mycobacterium2 thermoresistibile
4c3p4hA_
23.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna ligase, n-terminal domain protein;
PDBTitle: structures of archaeal members of the ligd 3'-phosphoesterase dna2 repair enzyme superfamily
5c2rfpA_
22.2 38
PDB header:hydrolase
Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution
6c5nb9A_
22.1 26
PDB header:rna
Chain: A: PDB Molecule:rna chaperone proq;
PDBTitle: structure of the n-terminal domain of the escherichia coli proq rna2 binding protein
7c3p43A_
20.9 29
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and activities of archaeal members of the ligd 3'2 phosphoesterase dna repair enzyme superfamily
8c5dmpA_
19.2 27
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the archaeal nhej phosphoesterase from methanocella2 paludicola.
9d2ftxb1
18.3 47
Fold:Kinetochore globular domain-like
Superfamily:Kinetochore globular domain
Family:Spc24-like
10c2fv4B_
18.0 47
PDB header:structural protein, protein binding
Chain: B: PDB Molecule:hypothetical 24.6 kda protein in ilv2-ade17
PDBTitle: nmr solution structure of the yeast kinetochore spc24/spc252 globular domain
11c2e55D_
17.0 50
PDB header:transferase
Chain: D: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structure of aq2163 protein from aquifex aeolicus
12c5td8C_
16.3 47
PDB header:replication
Chain: C: PDB Molecule:kinetochore protein spc24;
PDBTitle: crystal structure of an extended dwarf ndc80 complex
13d1i5ea_
15.7 83
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
14d1v9sa1
15.5 50
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
15d1bd3a_
15.3 67
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
16d1o5oa_
14.8 67
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
17c2ehjA_
14.8 50
PDB header:transferase
Chain: A: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structure of uracil phosphoribosyl transferase
18c4ymkA_
13.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
19d1rxta1
12.8 38
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
20c3n9dA_
11.9 33
PDB header:ligase
Chain: A: PDB Molecule:probable atp-dependent dna ligase;
PDBTitle: monoclinic structure of p. aeruginosa ligd phosphoesterase domain
21c4r9iA_
not modelled 11.6 37
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:serpin-18;
PDBTitle: crystal structure of cysteine proteinase inhibitor serpin18 from2 bombyx mori
22d1i8na_
not modelled 11.1 23
Fold:Hairpin loop containing domain-like
Superfamily:Hairpin loop containing domain-like
Family:Anti-platelet protein
23c1i8nA_
not modelled 11.1 23
PDB header:toxin
Chain: A: PDB Molecule:anti-platelet protein;
PDBTitle: crystal structure of leech anti-platelet protein
24c4uetA_
not modelled 10.8 33
PDB header:retinol-binding protein
Chain: A: PDB Molecule:nematode fatty acid retinoid binding protein;
PDBTitle: diversity in the structures and ligand binding sites among2 the fatty acid and retinol binding proteins of nematodes3 revealed by na-far-1 from necator americanus
25c5l25A_
not modelled 10.3 6
PDB header:transport protein
Chain: A: PDB Molecule:boron transporter 1;
PDBTitle: crystal structure of arabidopsis thaliana bor1
26c2vgpD_
not modelled 9.6 18
PDB header:transferase
Chain: D: PDB Molecule:inner centromere protein a;
PDBTitle: crystal structure of aurora b kinase in complex with a2 aminothiazole inhibitor
27c5mjrA_
not modelled 9.4 28
PDB header:photosynthesis
Chain: A: PDB Molecule:protein thf1;
PDBTitle: structure of psb29 at 1.55a
28c3njcA_
not modelled 9.3 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yslb protein;
PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460.
29c2kvvA_
not modelled 9.2 36
PDB header:hydrolase
Chain: A: PDB Molecule:putative excisionase;
PDBTitle: solution nmr of putative excisionase from klebsiella pneumoniae,2 northeast structural genomics consortium target target kpr49
30d2ysca1
not modelled 9.2 80
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
31c2n4pA_
not modelled 9.1 50
PDB header:dna binding protein
Chain: A: PDB Molecule:tar dna-binding protein 43;
PDBTitle: solution structure of the n-terminal domain of tdp-43
32c2js3B_
not modelled 8.9 40
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein q6n9a4_rhopa. northeast structural genomics2 consortium target rpt8
33c6appB_
not modelled 8.8 31
PDB header:immune system
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: anti-marburgvirus nucleoprotein single domain antibody a complexed2 with nucleoprotein c-terminal domain
34d1mzga_
not modelled 8.7 10
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
35c2hfvA_
not modelled 7.9 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa1041;
PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90.
36c2mdwA_
not modelled 7.9 100
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of a strand-swapped dimer of the ww domain
37d1i94m_
not modelled 7.8 32
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
38c5y22A_
not modelled 7.6 38
PDB header:sugar binding protein
Chain: A: PDB Molecule:22aa-pstd peptide;
PDBTitle: nmr-based model of the 22 amino acid peptide in polysialyltransferase2 domain (pstd) of the polysialyltransferase st8sia iv
39c5mrgA_
not modelled 7.5 50
PDB header:dna binding protein
Chain: A: PDB Molecule:tar dna-binding protein 43;
PDBTitle: solution structure of tdp-43 (residues 1-102)
40c5eqwE_
not modelled 7.4 22
PDB header:structural protein
Chain: E: PDB Molecule:putative major coat protein;
PDBTitle: structure of the major structural protein d135 of acidianus tailed2 spindle virus (atsv)
41c5l9pA_
not modelled 7.2 56
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of the pbp mota from a. tumefaciens b6
42d2ho2a1
not modelled 7.1 60
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
43c3uiyA_
not modelled 6.7 19
PDB header:structural protein
Chain: A: PDB Molecule:chimera protein of sefd and sefa;
PDBTitle: crystal structure of sefd_dsca in h2o
44d1ni7a_
not modelled 6.7 9
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
45c4or1B_
not modelled 6.7 17
PDB header:cell adhesion
Chain: B: PDB Molecule:invasin homolog aafb, major fimbrial subunit of aggregative
PDBTitle: structure and mechanism of fibronectin binding and biofilm formation2 of enteroaggregative escherischia coli aaf fimbriae
46c4yztA_
not modelled 6.7 9
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose hydrolase;
PDBTitle: crystal structure of a tri-modular gh5 (subfamily 4) endo-beta-1, 4-2 glucanase from bacillus licheniformis complexed with cellotetraose
47c5nsjB_
not modelled 6.6 27
PDB header:viral protein
Chain: B: PDB Molecule:pre-glycoprotein polyprotein gp complex;
PDBTitle: gp1 receptor-binding domain from whitewater arroyo mammarenavirus
48c5mqfQ_
not modelled 6.6 30
PDB header:splicing
Chain: Q: PDB Molecule:protein bud31 homolog;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
49c2k4mA_
not modelled 6.5 42
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0146 protein mth_1000;
PDBTitle: solution nmr structure of m. thermoautotrophicum protein mth_1000,2 northeast structural genomics consortium target tr8
50d1iyka1
not modelled 6.2 25
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
51c2k4zA_
not modelled 6.1 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dsrr;
PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5
52c3bbnM_
not modelled 5.9 32
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein s13;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
53d2gzoa1
not modelled 5.8 16
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
54c5y3uA_
not modelled 5.7 38
PDB header:transferase
Chain: A: PDB Molecule:pstd-22aa-polysia;
PDBTitle: nmr-based model of the 22 amino acid peptide in polysialyltransferase2 domain (pstd) of the polysialyltransferase st8sia iv in the presence3 of polysialic acid (polysia)
55c1rxtB_
not modelled 5.7 38
PDB header:transferase
Chain: B: PDB Molecule:glycylpeptide n-tetradecanoyltransferase 1;
PDBTitle: crystal structure of human myristoyl-coa:protein n-2 myristoyltransferase.
56d1uh6a_
not modelled 5.6 36
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
57d2do8a1
not modelled 5.6 13
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
58c5lfiA_
not modelled 5.6 36
PDB header:immune system
Chain: A: PDB Molecule:lactococcin-a immunity protein;
PDBTitle: lactococcin a immunity protein
59c1iylC_
not modelled 5.5 25
PDB header:transferase
Chain: C: PDB Molecule:myristoyl-coa:protein n-myristoyltransferase;
PDBTitle: crystal structure of candida albicans n-myristoyltransferase with non-2 peptidic inhibitor
60d2ew0a1
not modelled 5.3 13
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
61c2lxeA_
not modelled 5.2 42
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase suvr4;
PDBTitle: s4wyild
62c2muiA_
not modelled 5.1 15
PDB header:unknown function
Chain: A: PDB Molecule:upf0301 protein algh;
PDBTitle: solution structure of the algh protein from pseudomonas aeruginosa,2 pa0405, upf0301
63c5up1A_
not modelled 5.1 42
PDB header:de novo protein
Chain: A: PDB Molecule:eehee_rd3_1049;
PDBTitle: solution structure of the de novo mini protein eehee_rd3_1049
64c2lazA_
not modelled 5.0 60
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
65c2lb0A_
not modelled 5.0 60
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
66c5cpcA_
not modelled 5.0 6
PDB header:cell invasion
Chain: A: PDB Molecule:secreted effector protein sopd;
PDBTitle: crystal structure of sopd, a type iii secreted virulence effector from2 salmonella enterica

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