Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1826_(gcvH)_2071959_2072363
DateFri Aug 2 13:30:43 BST 2019
Unique Job ID1a54f9e99388682e
SequenceVSDIPSDLHY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.086 Y:34.865 Z:35.464
Model (left) based on template c3iftA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source.
Confidence and coverage
Confidence:100.0% Coverage:100%
134 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3iftA_
100.0 100
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source.
2c2edgA_
100.0 42
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: solution structure of the gcv_h domain from mouse glycine
3c3a8jF_
100.0 48
PDB header:transferase/transport protein
Chain: F: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of et-ehred complex
4d1onla_
100.0 54
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
5d1hpca_
100.0 48
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
6c2ka7A_
100.0 45
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: nmr solution structure of tm0212 at 40 c
7c3mxuA_
100.0 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae
8c5a35A_
100.0 24
PDB header:transport protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage protein h-like (gcvh-l)2 from streptococcus pyogenes
9c5ks8D_
97.9 30
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase subunit beta;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
10c2b8gA_
97.9 30
PDB header:biosynthetic protein
Chain: A: PDB Molecule:biotin/lipoyl attachment protein;
PDBTitle: solution structure of bacillus subtilis blap biotinylated-2 form (energy minimized mean structure)
11d1dcza_
97.8 34
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
12c3n6rK_
97.8 30
PDB header:ligase
Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit;
PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc)
13c5ks8F_
97.8 30
PDB header:ligase
Chain: F: PDB Molecule:pyruvate carboxylase subunit beta;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
14d1k8ma_
97.8 24
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
15d1bdoa_
97.7 29
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
16c2ejmA_
97.7 25
PDB header:ligase
Chain: A: PDB Molecule:methylcrotonoyl-coa carboxylase subunit alpha;
PDBTitle: solution structure of ruh-072, an apo-biotnyl domain form2 human acetyl coenzyme a carboxylase
17c3bg5B_
97.7 28
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of staphylococcus aureus pyruvate carboxylase
18c3hblA_
97.7 28
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of s. aureus pyruvate carboxylase t908a mutant
19c5vz0D_
97.7 22
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of lactococcus lactis pyruvate carboxylase g746a2 mutant in complex with cyclic-di-amp
20c4hnvB_
97.6 27
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of r54e mutant of s. aureus pyruvate carboxylase
21d1ghja_
not modelled 97.6 26
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
22c4qskB_
not modelled 97.6 30
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of l. monocytogenes pyruvate carboxylase in complex2 with cyclic-di-amp
23c2l5tA_
not modelled 97.6 21
PDB header:transferase
Chain: A: PDB Molecule:lipoamide acyltransferase;
PDBTitle: solution nmr structure of e2 lipoyl domain from thermoplasma2 acidophilum
24c2dneA_
not modelled 97.6 16
PDB header:transferase
Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase
PDBTitle: solution structure of rsgi ruh-058, a lipoyl domain of2 human 2-oxoacid dehydrogenase
25d1qjoa_
not modelled 97.6 29
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
26c2q8iB_
not modelled 97.5 16
PDB header:transferase
Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of
PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol
27d1iyua_
not modelled 97.5 23
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
28c2ejgD_
not modelled 97.5 24
PDB header:ligase
Chain: D: PDB Molecule:149aa long hypothetical methylmalonyl-coa decarboxylase
PDBTitle: crystal structure of the biotin protein ligase (mutation r48a) and2 biotin carboxyl carrier protein complex from pyrococcus horikoshii3 ot3
29c2dncA_
not modelled 97.5 35
PDB header:transferase
Chain: A: PDB Molecule:pyruvate dehydrogenase protein x component;
PDBTitle: solution structure of rsgi ruh-054, a lipoyl domain from2 human 2-oxoacid dehydrogenase
30c3bg3A_
not modelled 97.5 24
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing the biotin2 carboxylase domain at the n-terminus)
31d2pnrc1
not modelled 97.5 16
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
32d1y8ob1
not modelled 97.5 16
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
33d1o78a_
not modelled 97.4 34
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
34d1laba_
not modelled 97.4 29
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
35d1gjxa_
not modelled 97.4 26
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
36c3va7A_
not modelled 97.3 28
PDB header:ligase
Chain: A: PDB Molecule:klla0e08119p;
PDBTitle: crystal structure of the kluyveromyces lactis urea carboxylase
37c2kccA_
not modelled 97.2 26
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: solution structure of biotinoyl domain from human acetyl-2 coa carboxylase 2
38c2dn8A_
not modelled 97.2 27
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: solution structure of rsgi ruh-053, an apo-biotin carboxy2 carrier protein from human transcarboxylase
39c3u9sA_
not modelled 97.1 32
PDB header:ligase
Chain: A: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit;
PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex
40d1pmra_
not modelled 97.0 29
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
41c4rcnA_
not modelled 96.7 33
PDB header:ligase
Chain: A: PDB Molecule:long-chain acyl-coa carboxylase;
PDBTitle: structure and function of a single-chain, multi-domain long-chain2 acyl-coa carboxylase
42c3d4rE_
not modelled 96.6 28
PDB header:unknown function
Chain: E: PDB Molecule:domain of unknown function from the pfam-b_34464 family;
PDBTitle: crystal structure of a duf2118 family protein (mmp0046) from2 methanococcus maripaludis at 2.20 a resolution
43c6g2dC_
not modelled 96.6 33
PDB header:ligase
Chain: C: PDB Molecule:acetyl-coa carboxylase 1;
PDBTitle: citrate-induced acetyl-coa carboxylase (acc-cit) filament at 5.4 a2 resolution
44c5cslA_
not modelled 96.4 23
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of the 500 kd yeast acetyl-coa carboxylase2 holoenzyme dimer
45c5csaA_
not modelled 95.6 23
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of domains bt-bccp-ac1-ac5 of yeast acetyl-coa2 carboxylase
46c4p6vA_
not modelled 94.9 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit a;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
47c2k33A_
not modelled 94.6 30
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:acra;
PDBTitle: solution structure of an n-glycosylated protein using in2 vitro glycosylation
48c2qf7A_
not modelled 93.6 24
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase protein;
PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli
49c2qj8B_
not modelled 91.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:mlr6093 protein;
PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution
50c3tw6B_
not modelled 91.7 29
PDB header:ligase/activator
Chain: B: PDB Molecule:pyruvate carboxylase protein;
PDBTitle: structure of rhizobium etli pyruvate carboxylase t882a with the2 allosteric activator, acetyl coenzyme-a
51c3na6A_
not modelled 89.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:succinylglutamate desuccinylase/aspartoacylase;
PDBTitle: crystal structure of a succinylglutamate desuccinylase (tm1040_2694)2 from silicibacter sp. tm1040 at 2.00 a resolution
52c3fmcC_
not modelled 86.1 17
PDB header:hydrolase
Chain: C: PDB Molecule:putative succinylglutamate desuccinylase / aspartoacylase;
PDBTitle: crystal structure of a putative succinylglutamate desuccinylase /2 aspartoacylase family protein (sama_0604) from shewanella amazonensis3 sb2b at 1.80 a resolution
53c4kkuD_
not modelled 81.8 24
PDB header:membrane protein
Chain: D: PDB Molecule:membrane fusion protein;
PDBTitle: structure of besa (selenomethinone derivative - p212121)
54c3cdxB_
not modelled 79.9 24
PDB header:hydrolase
Chain: B: PDB Molecule:succinylglutamatedesuccinylase/aspartoacylase;
PDBTitle: crystal structure of succinylglutamatedesuccinylase/aspartoacylase2 from rhodobacter sphaeroides
55c3t51C_
not modelled 74.1 24
PDB header:transport protein
Chain: C: PDB Molecule:cation efflux system protein cusb;
PDBTitle: crystal structures of the pre-extrusion and extrusion states of the2 cusba adaptor-transporter complex
56c2jkuA_
not modelled 68.1 36
PDB header:ligase
Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain, mitochondrial;
PDBTitle: crystal structure of the n-terminal region of the biotin acceptor2 domain of human propionyl-coa carboxylase
57c3h9iB_
not modelled 67.0 24
PDB header:transport protein
Chain: B: PDB Molecule:cation efflux system protein cusb;
PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli
58d1brwa3
not modelled 63.0 29
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
59d1uoua3
not modelled 59.5 19
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
60d2tpta3
not modelled 54.3 10
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
61c5xu0B_
not modelled 41.3 24
PDB header:transport protein
Chain: B: PDB Molecule:membrane-fusion protein;
PDBTitle: structure of the membrane fusion protein spr0693 from streptococcus2 pneumoniae r6
62c5c22A_
not modelled 39.3 15
PDB header:protein transport
Chain: A: PDB Molecule:chromosomal hemolysin d;
PDBTitle: crystal structure of zn-bound hlyd from e. coli
63c2f1mA_
not modelled 35.1 16
PDB header:transport protein
Chain: A: PDB Molecule:acriflavine resistance protein a;
PDBTitle: conformational flexibility in the multidrug efflux system protein acra
64c3lnnB_
not modelled 33.7 28
PDB header:metal transport
Chain: B: PDB Molecule:membrane fusion protein (mfp) heavy metal cation efflux
PDBTitle: crystal structure of zneb from cupriavidus metallidurans
65c3h5qA_
not modelled 33.6 29
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase;
PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus
66c5nenA_
not modelled 33.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:lipase c;
PDBTitle: crystal structure of the soluble domain of lipc, a membrane fusion2 protein of a type i secretion system
67c2dsjA_
not modelled 32.6 29
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase;
PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8
68c1brwB_
not modelled 32.6 29
PDB header:transferase
Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase);
PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation
69c1t5eB_
not modelled 31.8 24
PDB header:transport protein
Chain: B: PDB Molecule:multidrug resistance protein mexa;
PDBTitle: the structure of mexa
70c2j0fC_
not modelled 31.2 19
PDB header:transferase
Chain: C: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design
71c1otpA_
not modelled 30.9 10
PDB header:phosphorylase
Chain: A: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase
72c5nbbA_
not modelled 29.1 21
PDB header:chaperone
Chain: A: PDB Molecule:rna chaperone proq;
PDBTitle: structure of the c-terminal domain of the escherichia coli proq rna2 binding protein
73c4ga5H_
not modelled 28.8 14
PDB header:transferase
Chain: H: PDB Molecule:putative thymidine phosphorylase;
PDBTitle: crystal structure of amp phosphorylase c-terminal deletion mutant in2 the apo-form
74d1vf7a_
not modelled 28.0 20
Fold:HlyD-like secretion proteins
Superfamily:HlyD-like secretion proteins
Family:HlyD-like secretion proteins
75c2aukA_
not modelled 27.8 25
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: structure of e. coli rna polymerase beta' g/g' insert
76c4l8jA_
not modelled 27.0 20
PDB header:transport protein
Chain: A: PDB Molecule:putative efflux transporter;
PDBTitle: crystal structure of a putative efflux transporter (bacegg_01895) from2 bacteroides eggerthii dsm 20697 at 2.06 a resolution
77c5nilG_
not modelled 27.0 20
PDB header:transport protein
Chain: G: PDB Molecule:macrolide export protein maca;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump-2 macb section
78c4tkoB_
not modelled 25.0 28
PDB header:membrane protein
Chain: B: PDB Molecule:emra;
PDBTitle: structure of the periplasmic adaptor protein emra
79d1v95a_
not modelled 21.0 17
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
80d2f3ga_
not modelled 18.7 24
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
81d2gpra_
not modelled 18.6 16
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
82d1gpra_
not modelled 17.2 22
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
83c5v5sH_
not modelled 16.7 16
PDB header:membrane protein
Chain: H: PDB Molecule:multidrug efflux pump subunit acra;
PDBTitle: multi-drug efflux; membrane transport; rnd superfamily; drug2 resistance
84d1ci3m2
not modelled 16.4 29
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
85d1qapa2
not modelled 16.2 27
Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:NadC N-terminal domain-like
86d2p84a1
not modelled 15.1 20
Fold:YopX-like
Superfamily:YopX-like
Family:YopX-like
87c5b0hB_
not modelled 14.4 14
PDB header:metal binding protein
Chain: B: PDB Molecule:leukocyte cell-derived chemotaxin-2;
PDBTitle: crystal structure of human leukocyte cell-derived chemotaxin 2
88c4cg4D_
not modelled 13.9 10
PDB header:actin-binding protein
Chain: D: PDB Molecule:pyrin;
PDBTitle: crystal structure of the chs-b30.2 domains of trim20
89c3sdzA_
not modelled 13.5 30
PDB header:hydrolase
Chain: A: PDB Molecule:v-type atp synthase alpha chain;
PDBTitle: structural characterization of the subunit a mutant f427w of the a-atp2 synthase from pyrococcus horikoshii
90c4dk0A_
not modelled 13.0 24
PDB header:membrane protein
Chain: A: PDB Molecule:putative maca;
PDBTitle: crystal structure of maca from actinobacillus actinomycetemcomitans
91c3fppB_
not modelled 13.0 26
PDB header:membrane protein
Chain: B: PDB Molecule:macrolide-specific efflux protein maca;
PDBTitle: crystal structure of e.coli maca
92c3lnnA_
not modelled 12.2 28
PDB header:metal transport
Chain: A: PDB Molecule:membrane fusion protein (mfp) heavy metal cation efflux
PDBTitle: crystal structure of zneb from cupriavidus metallidurans
93c4dk1B_
not modelled 12.2 20
PDB header:membrane protein
Chain: B: PDB Molecule:putative maca, multidrug resistance protein mexa;
PDBTitle: crystal structure of maca-mexa chimeric protein, containing the2 pseudomonas aeruginosa mexa alpha-hairpin domain.
94d1m1fa_
not modelled 11.9 25
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
95c6flnE_
not modelled 11.8 29
PDB header:protein binding
Chain: E: PDB Molecule:e3 ubiquitin/isg15 ligase trim25;
PDBTitle: crystal structure of the human trim25 coiled-coil and pryspry domains
96d1glaf_
not modelled 11.6 24
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
97c3pajA_
not modelled 9.9 24
PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating;
PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961
98c4zhbA_
not modelled 9.7 57
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ankyrin repeat-containing protein;
PDBTitle: n-terminal structure of ankyrin repeat-containing protein lega11 from2 legionella pneumophila
99d1o4ua2
not modelled 9.5 16
Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:NadC N-terminal domain-like

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