Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1837c_(glcB)_2084763_2086988
DateFri Aug 2 13:30:45 BST 2019
Unique Job ID3b0396c2214edd06
SequenceMTDRVSVGNL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.641 Y:68.924 Z:86.545
Model (left) based on template c5vfbB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:malate synthase g;
PDBTitle: 1.36 angstrom resolution crystal structure of malate synthase g from2 pseudomonas aeruginosa in complex with glycolic acid.
Confidence and coverage
Confidence:100.0% Coverage: 97%
720 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5vfbB_



100.0 69
PDB header:transferase
Chain: B: PDB Molecule:malate synthase g;
PDBTitle: 1.36 angstrom resolution crystal structure of malate synthase g from2 pseudomonas aeruginosa in complex with glycolic acid.
2d1n8ia_



100.0 100
Fold:TIM beta/alpha-barrel
Superfamily:Malate synthase G
Family:Malate synthase G
3d1d8ca_



100.0 57
Fold:TIM beta/alpha-barrel
Superfamily:Malate synthase G
Family:Malate synthase G
4c3cuzA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:malate synthase a;
PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
5c3cuxA_



100.0 20
PDB header:transferase
Chain: A: PDB Molecule:malate synthase;
PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
6c4roqA_



99.9 21
PDB header:lyase
Chain: A: PDB Molecule:malyl-coa lyase/beta-methylmalyl-coa lyase;
PDBTitle: crystal structure of malyl-coa lyase from methylobacterium extorquens
7c5vxsF_



99.9 21
PDB header:lyase
Chain: F: PDB Molecule:citrate lyase subunit beta-like protein, mitochondrial;
PDBTitle: crystal structure analysis of human clybl in apo form
8c4l9zA_



99.9 20
PDB header:lyase
Chain: A: PDB Molecule:malyl-coa lyase;
PDBTitle: crystal structure of rhodobacter sphaeroides malyl-coa lyase in2 complex with magnesium, oxalate, and coa
9c4l7zC_



99.8 21
PDB header:lyase
Chain: C: PDB Molecule:hpch/hpai aldolase;
PDBTitle: crystal structure of chloroflexus aurantiacus malyl-coa lyase
10c3pugA_



99.8 16
PDB header:transferase
Chain: A: PDB Molecule:malate synthase;
PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate
11c6arbA_



99.7 24
PDB header:lyase
Chain: A: PDB Molecule:citrate lyase subunit beta-like protein;
PDBTitle: crystal structure of protein cite from mycobacterium tuberculosis in2 complex with magnesium, pyruvate and coenzyme a
12c3qllB_



99.6 22
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of ripc from yersinia pestis
13c3r4iB_



99.6 18
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of a citrate lyase (bxe_b2899) from burkholderia2 xenovorans lb400 at 2.24 a resolution
14c1u5vA_



99.6 25
PDB header:lyase
Chain: A: PDB Molecule:cite;
PDBTitle: structure of cite complexed with triphosphate group of atp form2 mycobacterium tuberculosis
15c3qqwC_



99.6 17
PDB header:lyase
Chain: C: PDB Molecule:putative citrate lyase;
PDBTitle: crystal structure of a putative lyase (reut_b4148) from ralstonia2 eutropha jmp134 at 2.44 a resolution
16d1u5ha_



99.5 26
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
17c1sgjB_



99.5 17
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase, beta subunit;
PDBTitle: crystal structure of citrate lyase beta subunit
18d1sgja_



99.5 17
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
19c2hroA_



96.6 18
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus
20c2hwgA_



96.6 15
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of phosphorylated enzyme i of the phosphoenolpyruvate:sugar2 phosphotransferase system
21c2bg5C_



not modelled 96.5 18
PDB header:transferase
Chain: C: PDB Molecule:phosphoenolpyruvate-protein kinase;
PDBTitle: crystal structure of the phosphoenolpyruvate-binding enzyme i-domain2 from the thermoanaerobacter tengcongensis pep: sugar3 phosphotransferase system (pts)
22c4tv6A_



not modelled 96.5 15
PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxyglucarate aldolase;
PDBTitle: crystal structure of citrate synthase variant sbng e151q
23d1dxea_



not modelled 96.2 20
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
24c6r62A_



not modelled 96.1 16
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: crystal structure of a class ii pyruvate aldolase from sphingomonas2 wittichii rw1 in complex with hydroxypyruvate
25c4mf4F_



not modelled 96.0 17
PDB header:lyase
Chain: F: PDB Molecule:hpch/hpai aldolase/citrate lyase family protein;
PDBTitle: crystal structure of a hpch/hpal aldolase/citrate lyase family protein2 from burkholderia cenocepacia j2315
26c3qz6A_



not modelled 95.9 12
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2
27c4b5sB_



not modelled 95.1 20
PDB header:lyase
Chain: B: PDB Molecule:4-hydroxy-2-oxo-heptane-1,7-dioate aldolase;
PDBTitle: crystal structures of divalent metal dependent pyruvate aldolase,2 hpai, in complex with pyruvate
28c2v5jB_



not modelled 95.0 19
PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
29c2vwtA_



not modelled 94.5 13
PDB header:lyase
Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase;
PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex
30d1vbga1



not modelled 93.8 18
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
31c1h6zA_



not modelled 92.1 16
PDB header:transferase
Chain: A: PDB Molecule:pyruvate phosphate dikinase;
PDBTitle: 3.0 a resolution crystal structure of glycosomal pyruvate2 phosphate dikinase from trypanosoma brucei
32d1h6za1



not modelled 91.3 16
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
33d1izca_



not modelled 91.1 17
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
34c1izcA_



not modelled 91.1 17
PDB header:lyase
Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase;
PDBTitle: crystal structure analysis of macrophomate synthase
35c2olsA_



not modelled 90.1 14
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate synthase;
PDBTitle: the crystal structure of the phosphoenolpyruvate synthase from2 neisseria meningitidis
36d1e0ta2



not modelled 90.0 13
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
37d1kbla1



not modelled 87.4 19
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
38c1vbhA_



not modelled 86.6 18
PDB header:transferase
Chain: A: PDB Molecule:pyruvate,orthophosphate dikinase;
PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize
39c1kblA_



not modelled 80.7 19
PDB header:transferase
Chain: A: PDB Molecule:pyruvate phosphate dikinase;
PDBTitle: pyruvate phosphate dikinase
40d1a3xa2



not modelled 74.2 17
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
41d1liua2



not modelled 60.9 17
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
42d2g50a2



not modelled 58.3 21
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
43d1pkla2



not modelled 55.5 17
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
44d1rg6a_



not modelled 51.9 27
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
45d1zela1



not modelled 50.7 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rv2827c N-terminal domain-like
46d1mzha_



not modelled 44.7 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
47c3pdmP_



not modelled 44.7 20
PDB header:virus
Chain: P: PDB Molecule:coat protein;
PDBTitle: hibiscus latent singapore virus
48c5mrwG_



not modelled 42.3 27
PDB header:hydrolase
Chain: G: PDB Molecule:potassium-transporting atpase kdpc subunit;
PDBTitle: structure of the kdpfabc complex
49d1vtmp_



not modelled 40.3 12
Fold:Four-helical up-and-down bundle
Superfamily:TMV-like viral coat proteins
Family:TMV-like viral coat proteins
50d1ei7a_



not modelled 40.1 16
Fold:Four-helical up-and-down bundle
Superfamily:TMV-like viral coat proteins
Family:TMV-like viral coat proteins
51d1ub3a_



not modelled 35.4 21
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
52c4hffB_



not modelled 34.6 14
PDB header:hydrolase
Chain: B: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi effector-immunity complex tae4-tai42 from salmonella typhimurium
53c3ng3A_



not modelled 33.5 24
PDB header:lyase
Chain: A: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde
54c2kz6A_



not modelled 31.5 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2
55c3ngjC_



not modelled 28.6 11
PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica
56d1gsma1



not modelled 27.9 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
57d1ic8a2



not modelled 27.0 25
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:POU-specific domain
58d1vcva1



not modelled 26.6 9
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
59c2q4oA_



not modelled 23.9 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210
60d2q4oa1



not modelled 23.9 24
Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
61c2gu1A_



not modelled 21.7 37
PDB header:hydrolase
Chain: A: PDB Molecule:zinc peptidase;
PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
62c5xqgC_



not modelled 20.8 20
PDB header:lyase
Chain: C: PDB Molecule:pcrglx protein;
PDBTitle: crystal structure of a pl 26 exo-rhamnogalacturonan lyase from2 penicillium chrysogenum complexed with unsaturated galacturonosyl3 rhamnose
63c5ux5C_



not modelled 20.5 19
PDB header:oxidoreductase/transferase
Chain: C: PDB Molecule:bifunctional protein proline utilization a (puta);
PDBTitle: structure of proline utilization a (puta) from corynebacterium2 freiburgense
64c4gkgA_



not modelled 20.4 43
PDB header:signaling protein
Chain: A: PDB Molecule:c4-dicarboxylate transport sensor protein dctb;
PDBTitle: crystal structure of the s-helix linker
65c5dbuI_



not modelled 19.9 19
PDB header:lyase
Chain: I: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of 2-deoxyribose-5-phosphate aldolase (1-220) from2 streptococcus suis
66c4xbsA_



not modelled 19.2 17
PDB header:lyase
Chain: A: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: 2-deoxyribose-5-phosphate aldolase mutant - e78k
67c5uz9D_



not modelled 19.0 64
PDB header:immune system/rna
Chain: D: PDB Molecule:crispr-associated protein csy3;
PDBTitle: cryo em structure of anti-crisprs, acrf1 and acrf2, bound to type i-f2 crrna-guided crispr surveillance complex
68c4uw8F_



not modelled 18.7 23
PDB header:viral protein
Chain: F: PDB Molecule:l-shaped tail fiber protein;
PDBTitle: structure of the carboxy-terminal domain of the bacteriophage t5 l-2 shaped tail fiber with its intra-molecular chaperone domain
69c3bd1B_



not modelled 18.6 16
PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
70c3oa3A_



not modelled 18.3 13
PDB header:lyase
Chain: A: PDB Molecule:aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis
71c6b3nA_



not modelled 18.2 31
PDB header:protein binding
Chain: A: PDB Molecule:nleg5-1;
PDBTitle: solution structure of the n-terminal domain of the effector nleg5-12 from escherichia coli o157:h7 str. sakai
72c2pxgA_



not modelled 17.4 18
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein;
PDBTitle: nmr solution structure of omla
73c2zzxD_



not modelled 17.1 16
PDB header:transport protein
Chain: D: PDB Molecule:abc transporter, solute-binding protein;
PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate
74c2zc2A_



not modelled 16.6 12
PDB header:replication
Chain: A: PDB Molecule:dnad-like replication protein;
PDBTitle: crystal structure of dnad-like replication protein from streptococcus2 mutans ua159, gi 24377835, residues 127-199
75d1z21a1



not modelled 15.9 12
Fold:Type III secretion system domain
Superfamily:Type III secretion system domain
Family:YopR Core
76d1vj7a2



not modelled 15.9 33
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:RelA/SpoT domain
77d1ev7a_



not modelled 15.6 25
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease NaeI
78c3ty8A_



not modelled 15.3 21
PDB header:transferase
Chain: A: PDB Molecule:polynucleotide 2',3'-cyclic phosphate phosphodiesterase /
PDBTitle: crystal structure of c. thermocellum pnkp ligase domain apo form
79d1t35a_



not modelled 15.0 12
Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
80d1gyxa_



not modelled 14.8 21
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
81d1wuua1



not modelled 14.7 11
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
82c3hlzA_



not modelled 14.0 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bt_1490;
PDBTitle: crystal structure of bt_1490 (np_810393.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.50 a resolution
83c4e6nC_



not modelled 13.7 21
PDB header:protein binding
Chain: C: PDB Molecule:metallophosphoesterase;
PDBTitle: crystal structure of bacterial pnkp-c/hen1-n heterodimer
84c4hfkB_



not modelled 13.6 16
PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the type vi effector-immunity complex tae4-tai42 from enterobacter cloacae
85c2zkru_



not modelled 13.4 33
PDB header:ribosomal protein/rna
Chain: U: PDB Molecule:rna expansion segment es41;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
86d1u04a1



not modelled 13.0 80
Fold:SH3-like barrel
Superfamily:PAZ domain
Family:PAZ domain
87d2jn4a1



not modelled 12.7 21
Fold:NifT/FixU barrel-like
Superfamily:NifT/FixU-like
Family:NifT/FixU
88c2jn4A_



not modelled 12.7 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein fixu, nift;
PDBTitle: solution nmr structure of protein rp4601 from rhodopseudomonas2 palustris. northeast structural genomics consortium target rpt2;3 ontario center for structural proteomics target rp4601.
89d1o0ya_



not modelled 12.7 13
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
90c2vy2A_



not modelled 12.7 41
PDB header:transcription
Chain: A: PDB Molecule:protein leafy;
PDBTitle: structure of leafy transcription factor from arabidopsis2 thaliana in complex with dna from ag-i promoter
91d1umya_



not modelled 12.6 15
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
92c3mpoD_



not modelled 12.3 28
PDB header:hydrolase
Chain: D: PDB Molecule:predicted hydrolase of the had superfamily;
PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis
93c6f9aA_



not modelled 12.2 21
PDB header:sugar binding protein
Chain: A: PDB Molecule:er quality-control lectin;
PDBTitle: solution structure of the mrh domain of yos9 complexed with alpha3,2 alpha6-man5
94c5wamA_



not modelled 12.2 27
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein assembly factor bame;
PDBTitle: structure of bame from neisseria gonorrhoeae
95c6fk3B_



not modelled 12.0 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: structure and function of aldehyde dehydrogenase from thermus2 thermophilus: an enzyme with an evolutionarily-distinct c-terminal3 arm (recombinant full-length protein in complex with propanal)
96c3da5A_



not modelled 11.9 78
PDB header:rna binding protein
Chain: A: PDB Molecule:argonaute;
PDBTitle: crystal structure of piwi/argonaute/zwille(paz) domain from2 thermococcus thioreducens
97d1sv0c_



not modelled 11.8 18
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
98c4a1eT_



not modelled 11.5 42
PDB header:ribosome
Chain: T: PDB Molecule:rpl24;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
99d2ipqx1



not modelled 11.4 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:STY4665 C-terminal domain-like

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