Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1839c_(-)_2087656_2087919
DateFri Aug 2 13:30:45 BST 2019
Unique Job IDe5c0efbd30aeb9ab
SequenceMSKRLQVLLD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.319 Y:23.527 Z:25.884
Model (left) based on template c2k9iB_
Top template information
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
Confidence and coverage
Confidence: 75.2% Coverage: 37%
32 residues ( 37% of your sequence) have been modelled with 75.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k9iB_



75.2 34
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
2c6qeqD_



74.2 14
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
3c6gtsC_



34.1 17
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
4c2lseA_



33.4 41
PDB header:de novo protein
Chain: A: PDB Molecule:four helix bundle protein;
PDBTitle: solution nmr structure of de novo designed four helix bundle protein,2 northeast structural genomics consortium (nesg) target or188
5c2h1oH_



23.3 16
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
6d1ni8a_



22.1 46
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
7d2bsqe1



19.3 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
8c3kk4B_



17.8 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
9d1dvja_



17.3 14
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Decarboxylase
10c6ajnF_



14.8 18
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
11c3ldvB_



12.7 22
PDB header:lyase
Chain: B: PDB Molecule:orotidine 5'-phosphate decarboxylase;
PDBTitle: 1.77 angstrom resolution crystal structure of orotidine 5'-phosphate2 decarboxylase from vibrio cholerae o1 biovar eltor str. n16961
12d1lr1a_



12.3 44
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
13d1rfma_



10.6 15
Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
14d1xeaa1



10.1 20
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
15d1ov9a_



10.0 67
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
16c6bwqB_



9.7 10
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
17c4x2oB_



9.5 31
PDB header:transport protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: sac3n peptide bound to mex67:mtr2
18d1e8ob_



9.2 31
Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14
Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14
Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14
19c2k5jB_



8.2 9
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
20d2a6qb1



8.0 38
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
21d1j2jb_



not modelled 7.7 34
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
22c3nr7A_



not modelled 7.4 42
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein h-ns;
PDBTitle: crystal structure of s. typhimurium h-ns 1-83
23c3hs2H_



not modelled 7.2 20
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
24c3mfbA_



not modelled 7.1 56
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the s-type pyocin domain of eca1669 protein from2 erwinia carotovora, northeast structural genomics consortium target3 ewr82c
25c4chtA_



not modelled 7.0 33
PDB header:cell cycle
Chain: A: PDB Molecule:dna topoisomerase 3-alpha;
PDBTitle: crystal structure of the human topoisomerase iii alpha-rmi1 complex2 with bound calcium ion
26c6ozwA_



not modelled 7.0 47
PDB header:isomerase,dna binding protein
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of the 65-kilodalton amino-terminal fragment of dna2 topoisomerase i from streptococcus mutans
27d2nn6e2



not modelled 7.0 20
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
28d1mw9x_



not modelled 7.0 27
Fold:Prokaryotic type I DNA topoisomerase
Superfamily:Prokaryotic type I DNA topoisomerase
Family:Prokaryotic type I DNA topoisomerase
29d1km4a_



not modelled 6.9 13
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Decarboxylase
30d1rjda_



not modelled 6.8 47
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Leucine carboxy methyltransferase Ppm1
31c2lc0A_



not modelled 6.3 15
PDB header:protein binding
Chain: A: PDB Molecule:putative uncharacterized protein tb39.8;
PDBTitle: rv0020c_nter structure
32c1ceuA_



not modelled 5.7 24
PDB header:viral protein
Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal
PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein
33c2pnzB_



not modelled 5.7 12
PDB header:hydrolase/hydrolase
Chain: B: PDB Molecule:probable exosome complex exonuclease 2;
PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with udp and gmp
34d1914a2



not modelled 5.7 27
Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14
Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14
Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14
35d2bj7a1



not modelled 5.6 19
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
36c2gajA_



not modelled 5.6 47
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase i;
PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form
37d1y9ba1



not modelled 5.6 18
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
38d1i7da_



not modelled 5.6 33
Fold:Prokaryotic type I DNA topoisomerase
Superfamily:Prokaryotic type I DNA topoisomerase
Family:Prokaryotic type I DNA topoisomerase
39c2l6pA_



not modelled 5.4 23
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:phac1, phac2 and phad genes;
PDBTitle: nmr solution structure of the protein np_253742.1
40c4djdD_



not modelled 5.3 14
PDB header:transferase/vitamin-binding protein
Chain: D: PDB Molecule:corrinoid/iron-sulfur protein small subunit;
PDBTitle: crystal structure of folate-free corrinoid iron-sulfur protein (cfesp)2 in complex with its methyltransferase (metr)
41c3hefB_



not modelled 5.3 32
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit
42c3c19A_



not modelled 5.3 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19
43c3ieiD_



not modelled 5.2 32
PDB header:transferase
Chain: D: PDB Molecule:leucine carboxyl methyltransferase 1;
PDBTitle: crystal structure of human leucine carboxylmethyltransferase-1 in2 complex with s-adenosyl homocysteine
44c5gveA_



not modelled 5.1 33
PDB header:isomerase/protein binding
Chain: A: PDB Molecule:dna topoisomerase 3-beta-1;
PDBTitle: human top3b-tdrd3 complex

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