Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1848_(ureA)_2097355_2097657
DateFri Aug 2 13:30:46 BST 2019
Unique Job IDe1906be5c720fe91
SequenceMRLTPHEQER ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.632 Y:33.912 Z:29.838
Model (left) based on template d4ubpa_
Top template information
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
Confidence and coverage
Confidence:100.0% Coverage:100%
100 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d4ubpa_



100.0 65
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
2c4furD_



100.0 50
PDB header:hydrolase
Chain: D: PDB Molecule:urease subunit gamma 2;
PDBTitle: crystal structure of urease subunit gamma 2 from brucella melitensis2 biovar abortus 2308
3d1ejxa_



100.0 65
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
4d1e9ya2



100.0 58
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
5c1e9zA_



100.0 58
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit alpha;
PDBTitle: crystal structure of helicobacter pylori urease
6c4z42A_



100.0 51
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit gamma;
PDBTitle: crystal structure of urease from yersinia enterocolitica
7c2fvhB_



100.0 100
PDB header:hydrolase
Chain: B: PDB Molecule:urease gamma subunit;
PDBTitle: crystal structure of rv1848, a urease gamma subunit urea (urea2 amidohydrolase), from mycobacterium tuberculosis
8c3qgaD_



100.0 57
PDB header:hydrolase
Chain: D: PDB Molecule:fusion of urease beta and gamma subunits;
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
9c3la4A_



100.0 55
PDB header:hydrolase
Chain: A: PDB Molecule:urease;
PDBTitle: crystal structure of the first plant urease from jack bean (canavalia2 ensiformis)
10d2dfaa1



53.8 34
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
11c2x5eA_



49.0 16
PDB header:unknown function
Chain: A: PDB Molecule:upf0271 protein pa4511;
PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa
12d1v6ta_



43.5 38
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
13c4chmB_



33.6 35
PDB header:cell cycle
Chain: B: PDB Molecule:imc sub-compartment protein isp1;
PDBTitle: structure of inner membrane complex (imc) sub-compartment protein 12 (isp1) from toxoplasma gondii
14c5zq2C_



29.1 14
PDB header:cell invasion
Chain: C: PDB Molecule:side;
PDBTitle: side apo form
15c4chjA_



27.7 29
PDB header:cell cycle
Chain: A: PDB Molecule:imc sub-compartment protein isp3;
PDBTitle: structure of inner membrane complex (imc) sub-compartment2 protein 3 (isp3) from toxoplasma gondii
16c6fddC_



25.1 14
PDB header:structural protein
Chain: C: PDB Molecule:whirlin;
PDBTitle: crystal structure of the hhd2 domain of whirlin
17d2ffha2



23.7 24
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
18c2v75A_



23.1 24
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein nab2;
PDBTitle: n-terminal domain of nab2
19d1hq1a_



21.9 16
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
20c4d2qC_



21.4 14
PDB header:chaperone
Chain: C: PDB Molecule:clpb;
PDBTitle: negative-stain electron microscopy of e. coli clpb mutant e432a (bap2 form bound to clpp)
21c6ch2E_



not modelled 21.0 30
PDB header:structural protein
Chain: E: PDB Molecule:flagellar hook-associated protein 2,flagellar protein flit;
PDBTitle: crystal structure of the cytoplasmic domain of flha and flit-flid2 complex
22d1dula_



not modelled 21.0 16
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
23d1brwa1



not modelled 19.9 15
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
24c4uerb_



not modelled 19.6 50
PDB header:translation
Chain: B: PDB Molecule:us2;
PDBTitle: 40s-eif1-eif1a-eif3-eif3j translation initiation complex from2 lachancea kluyveri
25c2jqeA_



not modelled 19.6 18
PDB header:signaling protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: soution structure of af54 m-domain
26c4ue4C_



not modelled 19.5 24
PDB header:translation
Chain: C: PDB Molecule:signal recognition particle protein;
PDBTitle: structural basis for targeting and elongation arrest of bacillus2 signal recognition particle
27d1fskc1



not modelled 18.4 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
28c6hiuA_



not modelled 18.3 45
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cytochrome p460 from methylococcus capsulatus (bath)
29c5o9zE_



not modelled 18.3 45
PDB header:splicing
Chain: E: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
30c3ml6D_



not modelled 18.0 15
PDB header:protein transport
Chain: D: PDB Molecule:chimeric complex between protein dishevelled2 homolog dvl-2
PDBTitle: a complex between dishevelled2 and clathrin adaptor ap-2
31c6hihB_



not modelled 17.4 36
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c prime beta from methylococcus capsulatus (bath)
32c2c5qE_



not modelled 17.2 16
PDB header:structural genomics,unknown function
Chain: E: PDB Molecule:rraa-like protein yer010c;
PDBTitle: crystal structure of yeast yer010cp
33d1j6wa_



not modelled 16.6 35
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
34c4cdgC_



not modelled 16.4 27
PDB header:hydrolase
Chain: C: PDB Molecule:nanobody;
PDBTitle: crystal structure of the bloom's syndrome helicase blm in complex with2 nanobody
35d1ucbh1



not modelled 16.3 42
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
36d2tpta1



not modelled 16.1 18
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
37d1qb2a_



not modelled 16.0 13
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
38c5m30B_



not modelled 16.0 42
PDB header:secretion system
Chain: B: PDB Molecule:type vi secretion protein;
PDBTitle: structure of tssk from t6ss eaec in complex with nanobody nb18
39c3h3mB_



not modelled 15.9 17
PDB header:structural genomics
Chain: B: PDB Molecule:flagellar protein flit;
PDBTitle: crystal structure of flagellar protein flit from bordetella2 bronchiseptica
40d2ddha2



not modelled 15.8 30
Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:acyl-CoA oxidase C-terminal domains
41c2w1oA_



not modelled 15.5 24
PDB header:translation
Chain: A: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2
42c2je2A_



not modelled 15.4 45
PDB header:metal binding protein
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cytochrome p460 from nitrosomonas europaea - probable2 nonphysiological oxidized form
43c2rlwA_



not modelled 15.2 39
PDB header:toxin
Chain: A: PDB Molecule:plnf;
PDBTitle: three-dimensional structure of the two peptides that2 constitute the two-peptide bacteriocin plantaracin ef
44c5kp0A_



not modelled 14.6 30
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein flit,flagellum-specific atp synthase;
PDBTitle: recognition and targeting mechanisms by chaperones in flagella2 assembly and operation
45d2rhea_



not modelled 14.2 50
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
46d1qzxa2



not modelled 14.2 24
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
47c4xcoC_



not modelled 13.9 26
PDB header:rna binding protein
Chain: C: PDB Molecule:signal recognition particle 54 kda protein,signal sequence;
PDBTitle: signal-sequence induced conformational changes in the signal2 recognition particle
48c5m30C_



not modelled 13.2 42
PDB header:secretion system
Chain: C: PDB Molecule:type vi secretion protein;
PDBTitle: structure of tssk from t6ss eaec in complex with nanobody nb18
49c4f55A_



not modelled 13.1 26
PDB header:hydrolase
Chain: A: PDB Molecule:spore cortex-lytic enzyme;
PDBTitle: crystal structure of the catalytic domain of the bacillus cereus sleb2 protein
50c5m30A_



not modelled 13.0 42
PDB header:secretion system
Chain: A: PDB Molecule:type vi secretion protein;
PDBTitle: structure of tssk from t6ss eaec in complex with nanobody nb18
51c6amgA_



not modelled 12.5 26
PDB header:metal binding protein
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cyt p460 of nitrosomonas sp. al212
52d1jk0b_



not modelled 12.1 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
53c6et8B_



not modelled 12.0 16
PDB header:protein binding
Chain: B: PDB Molecule:albicidin resistance protein;
PDBTitle: crystal structure of alba in complex with albicidin
54c3iy1B_



not modelled 11.6 30
PDB header:immune system
Chain: B: PDB Molecule:fab b, heavy chain;
PDBTitle: variable domains of the wam of fab b fitted into the cryoem2 reconstruction of the virus-fab b complex
55c4d0uD_



not modelled 11.5 50
PDB header:viral protein
Chain: D: PDB Molecule:fiber protein;
PDBTitle: crystal structure of the fiber head domain of the atadenovirus snake2 adenovirus 1, selenomethionine-derivative
56d1v8ga1



not modelled 10.9 29
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
57d1kj2b_



not modelled 10.9 40
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
58d1fvcb_



not modelled 10.9 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
59c5fvcF_



not modelled 10.8 25
PDB header:viral protein
Chain: F: PDB Molecule:hmpv nucleoprotein;
PDBTitle: structure of rna-bound decameric hmpv nucleoprotein
60d1nl0l1



not modelled 10.8 46
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
61c1r6bX_



not modelled 10.6 19
PDB header:hydrolase
Chain: X: PDB Molecule:clpa protein;
PDBTitle: high resolution crystal structure of clpa
62d1dpua_



not modelled 10.2 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal domain of RPA32
63c1dpuA_



not modelled 10.2 15
PDB header:dna binding protein
Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain;
PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88)
64c3hefB_



not modelled 10.2 22
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit
65c4behB_



not modelled 10.2 18
PDB header:translation
Chain: B: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: solution structure of human ribosomal protein p1.p2 heterodimer
66c5gafi_



not modelled 10.1 16
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l10;
PDBTitle: rnc in complex with srp
67c2e0cA_



not modelled 10.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:409aa long hypothetical nadp-dependent isocitrate
PDBTitle: crystal structure of isocitrate dehydrogenase from sulfolobus tokodaii2 strain7 at 2.0 a resolution
68c6qrzA_



not modelled 9.8 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: crystal structure of r2-like ligand-binding oxidase from sulfolobus2 acidocaldarius solved by 3d micro-crystal electron diffraction
69d1lk3h1



not modelled 9.8 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
70c3iz5w_



not modelled 9.7 46
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
71d1eija_



not modelled 9.7 37
Fold:RuvA C-terminal domain-like
Superfamily:Double-stranded DNA-binding domain
Family:Double-stranded DNA-binding domain
72c2dsjA_



not modelled 9.7 13
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase;
PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8
73c6q8jA_



not modelled 9.6 22
PDB header:splicing
Chain: A: PDB Molecule:wd40 repeat-containing protein smu1;
PDBTitle: nterminal domain of human smu1 in complex with lsp641
74c5gapG_



not modelled 9.6 55
PDB header:transcription
Chain: G: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: body region of the u4/u6.u5 tri-snrnp
75c6f0gC_



not modelled 9.4 73
PDB header:chaperone
Chain: C: PDB Molecule:ip3;
PDBTitle: crystal structure asf1-ip3
76c6f0gD_



not modelled 9.4 73
PDB header:chaperone
Chain: D: PDB Molecule:ip3;
PDBTitle: crystal structure asf1-ip3
77d1n4xl_



not modelled 9.3 60
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
78c2yk5A_



not modelled 9.2 83
PDB header:transferase
Chain: A: PDB Molecule:cmp-n-acetylneuraminate-beta-galactosamide-alpha-2,3-
PDBTitle: structure of neisseria los-specific sialyltransferase (nst), in2 complex with cmp.
79c3dm5A_



not modelled 9.2 16
PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling the2 ribonucleic core of the signal recognition particle from the archaeon3 pyrococcus furiosus.
80c5vm4B_



not modelled 9.2 31
PDB header:unknown function
Chain: B: PDB Molecule:single domain camelid nanobody vhh t10;
PDBTitle: the apo form of the triclocarban-binding single domain camelid2 nanobody vhh t10
81d1u3hb1



not modelled 9.1 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
82c2cfuA_



not modelled 9.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:sdsa1;
PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid.
83c4v0bA_



not modelled 9.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: escherichia coli ftsh hexameric n-domain
84c3pl5A_



not modelled 8.9 16
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: fatty acid binding protein
85c2q6oB_



not modelled 8.8 31
PDB header:biosynthetic protein
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: sall-y70t with sam and cl
86d2jb5h1



not modelled 8.8 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
87c2fh0A_



not modelled 8.7 16
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical 16.0 kda protein in abf2-chl12
PDBTitle: nmr ensemble of the yeast saccharomyces cerevisiae protein2 ymr074cp core region
88c5dhxA_



not modelled 8.7 31
PDB header:immune system
Chain: A: PDB Molecule:
PDBTitle: hiv-1 rev ntd dimers with variable crossing angles
89d2atpb1



not modelled 8.6 55
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
90c3jcmK_



not modelled 8.5 55
PDB header:transcription
Chain: K: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: cryo-em structure of the spliceosomal u4/u6.u5 tri-snrnp
91c5gs0D_



not modelled 8.5 30
PDB header:immune system
Chain: D: PDB Molecule:heavy chain (anti-tlr3);
PDBTitle: crystal structure of the complex of tlr3 and bi-specific diabody
92c4bmtB_



not modelled 8.5 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of ribonucleotide reductase di-iron nrdf2 from bacillus cereus
93d1o17a1



not modelled 8.4 15
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
94c3izcw_



not modelled 8.4 38
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
95d2pp6a1



not modelled 8.3 28
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:gpFII-like
96d2cqqa1



not modelled 8.2 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
97d2o4ta1



not modelled 8.1 32
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
98d43c9b_



not modelled 8.1 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
99d1nakl1



not modelled 8.0 60
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)

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