Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1849_(ureB)_2097654_2097968
DateFri Aug 2 13:30:46 BST 2019
Unique Job IDe1b76811d8d669c9
SequenceMIPGEIFYGS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.327 Y:41.359 Z:47.875
Model (left) based on template d4ubpb_
Top template information
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
Confidence and coverage
Confidence:100.0% Coverage: 98%
102 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d4ubpb_



100.0 48
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
2d1e9ya1



100.0 44
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
3c1e9zA_



100.0 44
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit alpha;
PDBTitle: crystal structure of helicobacter pylori urease
4d1ejxb_



100.0 50
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
5c4z42B_



100.0 40
PDB header:hydrolase
Chain: B: PDB Molecule:urease subunit beta;
PDBTitle: crystal structure of urease from yersinia enterocolitica
6c3qgaD_



100.0 40
PDB header:hydrolase
Chain: D: PDB Molecule:fusion of urease beta and gamma subunits;
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
7c3la4A_



100.0 41
PDB header:hydrolase
Chain: A: PDB Molecule:urease;
PDBTitle: crystal structure of the first plant urease from jack bean (canavalia2 ensiformis)
8c5z87B_



88.5 21
PDB header:hydrolase
Chain: B: PDB Molecule:emgh1;
PDBTitle: structural of a novel b-glucosidase emgh1 at 2.3 angstrom from2 erythrobacter marinus
9c5wabD_



86.3 11
PDB header:hydrolase
Chain: D: PDB Molecule:putative beta-glucosidase;
PDBTitle: crystal structure of bifidobacterium adolescentis gh3 beta-glucosidase
10d2co7b1



83.6 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:Pilus chaperone
11c3ac0B_



83.5 30
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase i;
PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose
12c1yewI_



83.4 23
PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
13c3zz1A_



83.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:beta-d-glucoside glucohydrolase;
PDBTitle: crystal structure of a glycoside hydrolase family 3 beta-glucosidase,2 bgl1 from hypocrea jecorina at 2.1a resolution.
14c3rgbA_



83.1 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase subunit b2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
15c3zk0A_



81.6 16
PDB header:chaperone
Chain: A: PDB Molecule:sco3965;
PDBTitle: the crystal structure of a cu(i) metallochaperone from2 streptomyces lividans in its apo form
16c4i3gB_



81.2 17
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of desr, a beta-glucosidase from streptomyces2 venezuelae in complex with d-glucose.
17c3u48A_



80.5 11
PDB header:hydrolase
Chain: A: PDB Molecule:jmb19063;
PDBTitle: from soil to structure: a novel dimeric family 3-beta-glucosidase2 isolated from compost using metagenomic analysis
18c2co7B_



79.6 18
PDB header:fibril protein
Chain: B: PDB Molecule:putative fimbriae assembly chaperone;
PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii)
19c4djmA_



79.3 21
PDB header:chaperone
Chain: A: PDB Molecule:drab;
PDBTitle: crystal structure of the e. coli chaperone drab
20c1z9sA_



79.1 19
PDB header:chaperone/immune system
Chain: A: PDB Molecule:chaperone protein caf1m;
PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex
21c5z9sB_



not modelled 79.1 17
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3 protein;
PDBTitle: functional and structural characterization of a beta-glucosidase2 involved in saponin metabolism from intestinal bacteria
22c5d6hA_



not modelled 78.8 13
PDB header:chaperone/protein transport
Chain: A: PDB Molecule:csuc;
PDBTitle: crystal structure of csuc-csua/b chaperone-major subunit pre-assembly2 complex from csu biofilm-mediating pili of acinetobacter baumannii
23c2x41A_



not modelled 78.4 28
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana in2 complex with glucose
24c4zo9B_



not modelled 77.6 18
PDB header:hydrolase
Chain: B: PDB Molecule:lin1840 protein;
PDBTitle: crystal structure of mutant (d270a) beta-glucosidase from listeria2 innocua in complex with laminaribiose
25c5yotB_



not modelled 77.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:isoprimeverose-producing enzyme;
PDBTitle: isoprimeverose-producing enzyme from aspergillus oryzae in complex2 with isoprimeverose
26c5jp0A_



not modelled 75.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase bogh3b;
PDBTitle: bacteroides ovatus xyloglucan pul gh3b with bound glucose
27c5ghuA_



not modelled 73.5 19
PDB header:chaperone
Chain: A: PDB Molecule:probable fimbrial chaperone yadv;
PDBTitle: crystal structure of ecpd chaperone at 1.63 angstrom
28d1w8oa1



not modelled 72.9 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
29c3k25B_



not modelled 72.8 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:slr1438 protein;
PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112
30c5tf0B_



not modelled 72.7 10
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3 n-terminal domain protein;
PDBTitle: crystal structure of glycosil hydrolase family 3 n-terminal domain2 protein from bacteroides intestinalis
31d1p5va1



not modelled 72.5 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:Pilus chaperone
32c1so9A_



not modelled 72.3 17
PDB header:metal transport
Chain: A: PDB Molecule:cytochrome c oxidase assembly protein ctag;
PDBTitle: solution structure of apocox11, 30 structures
33d1so9a_



not modelled 72.3 17
Fold:Ctag/Cox11
Superfamily:Ctag/Cox11
Family:Ctag/Cox11
34c4d0jD_



not modelled 72.3 19
PDB header:hydrolase
Chain: D: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of glycoside hydrolase family 3 beta-2 glucosidase cel3a from the moderately thermophilic fungus3 rasamsonia emersonii
35c2zooA_



not modelled 70.8 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase;
PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
36c5wabC_



not modelled 70.4 11
PDB header:hydrolase
Chain: C: PDB Molecule:putative beta-glucosidase;
PDBTitle: crystal structure of bifidobacterium adolescentis gh3 beta-glucosidase
37c5zl1A_



not modelled 70.2 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative copper-type nitrite reductase;
PDBTitle: hexameric structure of copper-containing nitrite reductase of an2 anammox organism ksu-1
38c4iidB_



not modelled 69.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase 1;
PDBTitle: crystal structure of beta-glucosidase 1 from aspergillus aculeatus in2 complex with 1-deoxynojirimycin
39c5k6lA_



not modelled 65.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:b-glucosidase;
PDBTitle: structure of a gh3 b-glucosidase from cow rumen metagenome
40c4lesA_



not modelled 64.8 10
PDB header:unknown function
Chain: A: PDB Molecule:protein - conserved hypothetical;
PDBTitle: 2.2 angstrom crystal structure of conserved hypothetical protein from2 bacillus anthracis.
41c3kw8A_



not modelled 64.7 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative copper oxidase;
PDBTitle: two-domain laccase from streptomyces coelicolor at 2.3 a resolution
42c3g5wC_



not modelled 64.6 19
PDB header:metal binding protein
Chain: C: PDB Molecule:multicopper oxidase type 1;
PDBTitle: crystal structure of blue copper oxidase from nitrosomonas europaea
43c6q7jB_



not modelled 64.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:exo-1,4-beta-xylosidase xlnd;
PDBTitle: gh3 exo-beta-xylosidase (xlnd) in complex with xylobiose aziridine2 activity based probe
44d1oe1a1



not modelled 57.7 15
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
45c2aanA_



not modelled 52.7 12
PDB header:electron transport
Chain: A: PDB Molecule:auracyanin a;
PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus
46c5wvpA_



not modelled 50.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: expression, characterization and crystal structure of a novel beta-2 glucosidase from paenibacillus barengoltzii
47d1ndsa1



not modelled 50.2 11
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
48c5a7mA_



not modelled 49.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-xylosidase;
PDBTitle: the structure of hypocrea jecorina beta-xylosidase xyl3a (bxl1)
49c2qsvA_



not modelled 48.8 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83
50c3rfrI_



not modelled 47.4 18
PDB header:oxidoreductase
Chain: I: PDB Molecule:pmob;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
51c2k6zA_



not modelled 47.2 33
PDB header:metal transport
Chain: A: PDB Molecule:putative uncharacterized protein ttha1943;
PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14)
52c3qbtH_



not modelled 45.0 18
PDB header:protein transport/hydrolase
Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1;
PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp
53c6hbeA_



not modelled 44.9 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper-containing nitrite reductase;
PDBTitle: cu-containing nitrite reductase (nirk) from thermus scotoductus sa-01
54d1l4ia1



not modelled 44.7 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:Pilus chaperone
55c5n76C_



not modelled 44.4 33
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
56c2ii8F_



not modelled 42.6 31
PDB header:signaling protein
Chain: F: PDB Molecule:anabaena sensory rhodopsin transducer protein;
PDBTitle: anabaena sensory rhodopsin transducer
57d3bwuc1



not modelled 41.3 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:Pilus chaperone
58d1jova_



not modelled 38.6 14
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Hypothetical protein HI1317
59c4ncdA_



not modelled 38.3 10
PDB header:chaperone
Chain: A: PDB Molecule:gram-negative pili assembly chaperone, n-terminal domain
PDBTitle: crystal structure of class 5 fimbriae chaperone cfaa
60d1cuoa_



not modelled 38.1 14
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
61c1l4iA_



not modelled 37.3 8
PDB header:chaperone
Chain: A: PDB Molecule:sfae protein;
PDBTitle: crystal structure of the periplasmic chaperone sfae
62d1ibya_



not modelled 36.9 7
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
63c3q48B_



not modelled 36.7 16
PDB header:chaperone
Chain: B: PDB Molecule:chaperone cupb2;
PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone
64c3q1nA_



not modelled 36.4 15
PDB header:isomerase
Chain: A: PDB Molecule:galactose mutarotase related enzyme;
PDBTitle: crystal structure of a galactose mutarotase-like protein (lsei_2598)2 from lactobacillus casei atcc 334 at 1.61 a resolution
65c2x3bB_



not modelled 36.3 16
PDB header:hydrolase
Chain: B: PDB Molecule:toxic extracellular endopeptidase;
PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase
66c4bq3A_



not modelled 35.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:b-agarase;
PDBTitle: structural analysis of an exo-beta-agarase
67c5dfkA_



not modelled 34.6 14
PDB header:structural protein
Chain: A: PDB Molecule:probable fimbrial chaperone ecpb;
PDBTitle: crystal structure of the escherichia coli common pilus chaperone, ecpb
68c3nreB_



not modelled 33.7 21
PDB header:isomerase
Chain: B: PDB Molecule:aldose 1-epimerase;
PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution
69c5nbsA_



not modelled 33.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: structural studies of a glycoside hydrolase family 3 beta-glucosidase2 from the model fungus neurospora crassa
70c3mwxA_



not modelled 33.2 13
PDB header:isomerase
Chain: A: PDB Molecule:aldose 1-epimerase;
PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution
71c2f1eA_



not modelled 32.5 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein apag;
PDBTitle: solution structure of apag protein
72d1qhqa_



not modelled 32.5 11
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
73d1x9la_



not modelled 32.4 27
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:DR1885-like metal-binding protein
Family:DR1885-like metal-binding protein
74d1xvsa_



not modelled 32.1 28
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ApaG-like
Family:ApaG-like
75c4r4gA_



not modelled 31.1 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
76c4f7kA_



not modelled 30.1 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase;
PDBTitle: crystal structure of lac15 from a marine microbial metagenome
77c4bifC_



not modelled 29.8 21
PDB header:lyase
Chain: C: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: biochemical and structural characterisation of a novel2 manganese-dependent hydroxynitrile lyase from bacteria
78d1mzya1



not modelled 28.6 11
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
79c3dcdA_



not modelled 28.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:galactose mutarotase related enzyme;
PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33.
80d1nc7a_



not modelled 27.3 14
Fold:Hypothetical protein TM1070
Superfamily:Hypothetical protein TM1070
Family:Hypothetical protein TM1070
81c4knuB_



not modelled 27.2 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:multicopper oxidase type 1;
PDBTitle: copper nitrite reductase from nitrosomonas europaea at ph 6.5
82c3jt0B_



not modelled 27.2 13
PDB header:structural protein
Chain: B: PDB Molecule:lamin-b1;
PDBTitle: crystal structure of the c-terminal fragment (426-558) lamin-b1 from2 homo sapiens, northeast structural genomics consortium target hr5546a
83d1snra2



not modelled 26.3 15
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
84c2l0dA_



not modelled 25.7 16
PDB header:cell adhesion
Chain: A: PDB Molecule:cell surface protein;
PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a
85d1tzaa_



not modelled 25.3 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ApaG-like
Family:ApaG-like
86c3t9wA_



not modelled 24.5 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:small laccase, multi-copper oxidase;
PDBTitle: small laccase from amycolatopsis sp. atcc 39116
87c2lw6A_



not modelled 23.6 44
PDB header:apoptosis
Chain: A: PDB Molecule:avrpiz-t protein;
PDBTitle: solution structure of an avirulence protein avrpiz-t from pathogen2 magnaportheoryzae
88d1hfua1



not modelled 23.5 19
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
89c3wkoA_



not modelled 23.2 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: copper-containing nitrite reductase from thermophilic bacterium2 geobacillus thermodenitrificans
90d1mspa_



not modelled 22.4 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
91c5z6pB_



not modelled 21.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:b-agarase;
PDBTitle: the crystal structure of an agarase, agwh50c
92d1xq4a_



not modelled 20.9 44
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ApaG-like
Family:ApaG-like
93c1qniE_



not modelled 20.4 20
PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrous-oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from pseudomonas nautica,2 at 2.4a resolution
94c2lllA_



not modelled 20.4 20
PDB header:structural protein
Chain: A: PDB Molecule:lamin-b2;
PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a
95c3tasC_



not modelled 20.3 28
PDB header:oxidoreductase
Chain: C: PDB Molecule:small laccase, multi-copper oxidase;
PDBTitle: small laccase from streptomyces viridosporus t7a
96c3mpbA_



not modelled 19.8 26
PDB header:isomerase
Chain: A: PDB Molecule:sugar isomerase;
PDBTitle: z5688 from e. coli o157:h7 bound to fructose
97c3ay2A_



not modelled 19.5 16
PDB header:antitumor protein, antiviral protein
Chain: A: PDB Molecule:lipid modified azurin protein;
PDBTitle: crystal structure of neisserial azurin
98d1cc3a_



not modelled 18.6 13
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
99c1qunA_



not modelled 18.6 11
PDB header:chaperone/structural protein
Chain: A: PDB Molecule:papd-like chaperone fimc;
PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli

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