Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1855c_(-)_2103191_2104114
DateFri Aug 2 13:30:47 BST 2019
Unique Job ID1ba65e3bee014d22
SequenceVTIRLGLQIP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.112 Y:52.404 Z:48.253
Model (left) based on template c3sdoB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase;
PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei
Confidence and coverage
Confidence:100.0% Coverage: 98%
302 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3sdoB_



100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase;
PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei
2d1luca_



100.0 15
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
3c1tvlA_



100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein ytnj;
PDBTitle: structure of ytnj from bacillus subtilis
4d1tvla_



100.0 20
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
5c3raoB_



100.0 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987.
6c5tlcA_



100.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:dibenzothiophene desulfurization enzyme a;
PDBTitle: crystal structure of bdsa from bacillus subtilis wu-s2b
7c5wanA_



100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrimidine monooxygenase ruta;
PDBTitle: crystal structure of a flavoenzyme ruta in the pyrimidine catabolic2 pathway
8c5dqpA_



100.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:edta monooxygenase;
PDBTitle: edta monooxygenase (emoa) from chelativorans sp. bnc1
9d1lucb_



100.0 16
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
10c2i7gA_



100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:monooxygenase;
PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens
11c2wgkA_



100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase;
PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida
12c5w4zA_



100.0 20
PDB header:flavoprotein
Chain: A: PDB Molecule:riboflavin lyase;
PDBTitle: crystal structure of riboflavin lyase (rcae) with modified fmn and2 substrate riboflavin
13d1ezwa_



100.0 20
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
14c3b9nB_



100.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkane monoxygenase;
PDBTitle: crystal structure of long-chain alkane monooxygenase (lada)
15c6friD_



100.0 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:alkanal monooxygenase beta chain;
PDBTitle: structure of luxb from photobacterium leiognathi
16c1z69D_



100.0 21
PDB header:oxidoreductase
Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)-
PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420
17c2b81D_



100.0 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus
18d1nqka_



100.0 22
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
19c6ak1B_



100.0 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:dimethyl-sulfide monooxygenase;
PDBTitle: crystal structure of dmoa from hyphomicrobium sulfonivorans
20c3c8nB_



100.0 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase
PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis
21d1rhca_



not modelled 100.0 22
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
22d1f07a_



not modelled 100.0 22
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
23d1nfpa_



not modelled 99.9 12
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
24d1fvpa_



not modelled 99.0 15
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
25c3kwsB_



not modelled 84.3 19
PDB header:isomerase
Chain: B: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution
26c4xkyC_



not modelled 71.9 15
PDB header:lyase
Chain: C: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of dihydrodipicolinate synthase from the commensal bacterium2 bacteroides thetaiotaomicron at 2.1 a resolution
27c3qy6A_



not modelled 64.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe;
PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases
28c3noyA_



not modelled 51.1 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
29c4k3zA_



not modelled 50.7 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-erythrulose 4-phosphate dehydrogenase;
PDBTitle: crystal structure of d-erythrulose 4-phosphate dehydrogenase from2 brucella melitensis, solved by iodide sad
30c3ez4B_



not modelled 48.7 26
PDB header:transferase
Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase;
PDBTitle: crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase2 from burkholderia pseudomallei
31c3d0cB_



not modelled 44.5 18
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from oceanobacillus2 iheyensis at 1.9 a resolution
32d1xp3a1



not modelled 41.4 20
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Endonuclease IV
33c3e38A_



not modelled 39.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:two-domain protein containing predicted php-like metal-
PDBTitle: crystal structure of a two-domain protein containing predicted php-2 like metal-dependent phosphoesterase (bvu_3505) from bacteroides3 vulgatus atcc 8482 at 2.20 a resolution
34c3ilvA_



not modelled 38.6 16
PDB header:ligase
Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase;
PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii
35c3ih1A_



not modelled 38.6 16
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
36c3e96B_



not modelled 36.7 21
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bacillus2 clausii
37c1jpkA_



not modelled 34.1 21
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase
38c2wjeA_



not modelled 33.9 9
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb;
PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4.
39d1o5ka_



not modelled 33.8 23
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
40c2zvrA_



not modelled 30.0 23
PDB header:isomerase
Chain: A: PDB Molecule:uncharacterized protein tm_0416;
PDBTitle: crystal structure of a d-tagatose 3-epimerase-related protein from2 thermotoga maritima
41d1jdfa1



not modelled 28.8 13
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
42d1r3sa_



not modelled 28.8 21
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Uroporphyrinogen decarboxylase, UROD
43d1j93a_



not modelled 28.5 28
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Uroporphyrinogen decarboxylase, UROD
44c2ze3A_



not modelled 27.6 39
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
45c3wqoB_



not modelled 26.8 15
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein mj1311;
PDBTitle: crystal structure of d-tagatose 3-epimerase-like protein
46c1zlpA_



not modelled 26.5 8
PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
47d1ujqa_



not modelled 25.3 25
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
48c2hjpA_



not modelled 25.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:phosphonopyruvate hydrolase;
PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++
49c3b8iF_



not modelled 24.3 15
PDB header:lyase
Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase;
PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
50c3fa4D_



not modelled 24.1 21
PDB header:lyase
Chain: D: PDB Molecule:2,3-dimethylmalate lyase;
PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form
51c3auoB_



not modelled 23.1 16
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
52c2qiwA_



not modelled 22.9 11
PDB header:transferase
Chain: A: PDB Molecule:pep phosphonomutase;
PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
53d1m3ua_



not modelled 22.8 22
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
54d1muma_



not modelled 22.8 19
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
55c3lyeA_



not modelled 21.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
56c3na8A_



not modelled 20.7 22
PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa
57c3qfeB_



not modelled 20.3 14
PDB header:lyase
Chain: B: PDB Molecule:putative dihydrodipicolinate synthase family protein;
PDBTitle: crystal structures of a putative dihydrodipicolinate synthase family2 protein from coccidioides immitis
58c4ur7B_



not modelled 19.3 13
PDB header:lyase
Chain: B: PDB Molecule:keto-deoxy-d-galactarate dehydratase;
PDBTitle: crystal structure of keto-deoxy-d-galactarate dehydratase2 complexed with pyruvate
59c3bh1A_



not modelled 18.9 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0371 protein dip2346;
PDBTitle: crystal structure of protein dip2346 from corynebacterium diphtheriae
60d2d69a1



not modelled 18.7 14
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
61c2yb1A_



not modelled 18.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolase;
PDBTitle: structure of an amidohydrolase from chromobacterium violaceum (efi2 target efi-500202) with bound mn, amp and phosphate.
62c3eooL_



not modelled 17.0 17
PDB header:lyase
Chain: L: PDB Molecule:methylisocitrate lyase;
PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
63c2ehhE_



not modelled 16.9 12
PDB header:lyase
Chain: E: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus
64c2ejaB_



not modelled 16.7 12
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus
65c3pueA_



not modelled 16.5 15
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution
66c3vniC_



not modelled 16.0 10
PDB header:isomerase
Chain: C: PDB Molecule:xylose isomerase domain protein tim barrel;
PDBTitle: crystal structures of d-psicose 3-epimerase from clostridium2 cellulolyticum h10 and its complex with ketohexose sugars
67d1jpdx1



not modelled 15.2 26
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
68c3cqkB_



not modelled 15.1 23
PDB header:isomerase
Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae;
PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate
69c4exqA_



not modelled 15.1 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase (upd) from2 burkholderia thailandensis e264
70c3dcpB_



not modelled 14.8 16
PDB header:hydrolase
Chain: B: PDB Molecule:histidinol-phosphatase;
PDBTitle: crystal structure of the putative histidinol phosphatase hisk from2 listeria monocytogenes. northeast structural genomics consortium3 target lmr141.
71d2noca1



not modelled 14.4 21
Fold:Dodecin subunit-like
Superfamily:YdgH-like
Family:YdgH-like
72c3qvjB_



not modelled 14.3 31
PDB header:isomerase
Chain: B: PDB Molecule:putative hydantoin racemase;
PDBTitle: allantoin racemase from klebsiella pneumoniae
73d1oy0a_



not modelled 14.2 16
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
74c6k0aC_



not modelled 13.8 0
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:ribonuclease p protein component 3;
PDBTitle: cryo-em structure of an archaeal ribonuclease p
75c6arhA_



not modelled 13.8 24
PDB header:lyase
Chain: A: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: crystal structure of human nal at a resolution of 1.6 angstrom
76c2nuxB_



not modelled 13.6 5
PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate
PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution
77c2hmcA_



not modelled 13.1 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens
78c6mqhA_



not modelled 13.1 15
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-tetrahydrodipicolinate synthase;
PDBTitle: crystal structure of 4-hydroxy-tetrahydrodipicolinate synthase (htpa2 synthase) from burkholderia mallei
79c5dxxA_



not modelled 12.8 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:artemisinic aldehyde delta(11(13)) reductase;
PDBTitle: crystal structure of dbr2
80d1oyaa_



not modelled 12.8 17
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
81c2r94B_



not modelled 12.7 29
PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase;
PDBTitle: crystal structure of kd(p)ga from t.tenax
82d1z41a1



not modelled 12.3 21
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
83d1bqga1



not modelled 12.2 13
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
84c2r8wB_



not modelled 12.2 24
PDB header:lyase
Chain: B: PDB Molecule:agr_c_1641p;
PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58
85c4a3uB_



not modelled 12.1 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh\:flavin oxidoreductase/nadh oxidase;
PDBTitle: x-structure of the old yellow enzyme homologue from zymomonas mobilis2 (ncr)
86c4n4qD_



not modelled 11.8 12
PDB header:lyase
Chain: D: PDB Molecule:acylneuraminate lyase;
PDBTitle: crystal structure of n-acetylneuraminate lyase from mycoplasma2 synoviae, crystal form ii
87d2a6na1



not modelled 11.6 11
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
88d1x7fa2



not modelled 11.5 16
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Outer surface protein, N-terminal domain
89c3si9B_



not modelled 11.0 12
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae
90c3daqB_



not modelled 11.0 15
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus
91c1rcxH_



not modelled 10.9 10
PDB header:lyase (carbon-carbon)
Chain: H: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase;
PDBTitle: non-activated spinach rubisco in complex with its substrate2 ribulose-1,5-bisphosphate
92c4tmcB_



not modelled 10.8 17
PDB header:flavoprotein
Chain: B: PDB Molecule:old yellow enzyme;
PDBTitle: crystal structure of old yellow enzyme from candida macedoniensis2 aku4588 complexed with p-hydroxybenzaldehyde
93c3n05B_



not modelled 10.7 12
PDB header:ligase
Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: crystal structure of nh3-dependent nad+ synthetase from streptomyces2 avermitilis
94d1e8ca2



not modelled 10.6 18
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
95c4zr8B_



not modelled 10.5 28
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: structure of uroporphyrinogen decarboxylase from acinetobacter2 baumannii
96c4b5nA_



not modelled 10.2 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: crystal structure of oxidized shewanella yellow enzyme 4 (sye4)
97c2infB_



not modelled 10.2 19
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from bacillus2 subtilis
98d1xxxa1



not modelled 10.2 18
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
99c6daqA_



not modelled 10.1 25
PDB header:lyase
Chain: A: PDB Molecule:phdj;
PDBTitle: phdj bound to substrate intermediate

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