Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1861_(-)_2109172_2109477
DateFri Aug 2 13:30:47 BST 2019
Unique Job ID5325703871d7b91e
SequenceMDITATTEFS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.922 Y:25.734 Z:45.090
Model (left) based on template c5wufA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: structural basis for conductance through tric cation channels
Confidence and coverage
Confidence: 88.0% Coverage: 73%
74 residues ( 73% of your sequence) have been modelled with 88.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5wufA_



88.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: structural basis for conductance through tric cation channels
2d1l7va_



80.8 15
Fold:ABC transporter involved in vitamin B12 uptake, BtuC
Superfamily:ABC transporter involved in vitamin B12 uptake, BtuC
Family:ABC transporter involved in vitamin B12 uptake, BtuC
3c5h36E_



78.5 20
PDB header:membrane protein
Chain: E: PDB Molecule:uncharacterized protein tric;
PDBTitle: crystal structures of the tric trimeric intracellular cation channel2 orthologue from rhodobacter sphaeroides
4c5b57B_



78.4 17
PDB header:metal transport
Chain: B: PDB Molecule:putative hemin abc transport system, membrane protein;
PDBTitle: inward-facing conformation of abc heme importer bhuuv from2 burkholderia cenocepacia
5c4dblB_



75.7 15
PDB header:transport protein
Chain: B: PDB Molecule:vitamin b12 import system permease protein btuc;
PDBTitle: crystal structure of e159q mutant of btucdf
6c2nq2A_



69.6 21
PDB header:metal transport
Chain: A: PDB Molecule:hypothetical abc transporter permease protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
7c5h35C_



65.3 18
PDB header:immune system/membrane protein
Chain: C: PDB Molecule:membrane protein tric;
PDBTitle: crystal structures of the tric trimeric intracellular cation channel2 orthologue from sulfolobus solfataricus
8c5wudA_



63.1 21
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structural basis for conductance through tric cation channels
9c4hzuS_



51.0 21
PDB header:hydrolase, transport protein
Chain: S: PDB Molecule:predicted membrane protein;
PDBTitle: structure of a bacterial energy-coupling factor transporter
10c4ikyA_



50.4 9
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
11c4rfsS_



46.6 19
PDB header:hydrolase, transport protein
Chain: S: PDB Molecule:substrate binding pritein s;
PDBTitle: structure of a pantothenate energy coupling factor transporter
12c6e9oA_



45.6 22
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
13c4g1uB_



44.3 15
PDB header:transport protein/hydrolase
Chain: B: PDB Molecule:hemin transport system permease protein hmuu;
PDBTitle: x-ray structure of the bacterial heme transporter hmuuv from yersinia2 pestis
14c6exsA_



38.6 12
PDB header:membrane protein
Chain: A: PDB Molecule:peptide abc transporter permease;
PDBTitle: crystal structure of a pot family transporter in complex with2 thioalcohol conjugated peptide.
15c1xooA_



19.8 36
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: nmr structure of g1s mutant of influenza hemagglutinin2 fusion peptide in dpc micelles at ph 5
16c1iboA_



18.7 36
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin ha2 chain peptide;
PDBTitle: nmr structure of hemagglutinin fusion peptide in dpc2 micelles at ph 7.4
17c1ibnA_



18.7 36
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin ha2 chain peptide;
PDBTitle: nmr structure of hemagglutinin fusion peptide in dpc2 micelles at ph 5
18c1xopA_



18.3 36
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: nmr structure of g1v mutant of influenza hemagglutinin2 fusion peptide in dpc micelles at ph 5
19c2kxaA_



17.9 36
PDB header:viral protein, immune system
Chain: A: PDB Molecule:haemagglutinin ha2 chain peptide;
PDBTitle: the hemagglutinin fusion peptide (h1 subtype) at ph 7.4
20c2l4gA_



17.6 33
PDB header:viral protein
Chain: A: PDB Molecule:haemagglutinin;
PDBTitle: influenza haemagglutinin fusion peptide mutant g13a
21c2ap8A_



not modelled 17.5 46
PDB header:antibiotic
Chain: A: PDB Molecule:bombinin h4;
PDBTitle: solution structure of bombinin h4 in dpc micelles
22c5u9xA_



not modelled 17.4 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-k1;
PDBTitle: ocellatin-lb2
23c2ap7A_



not modelled 17.3 46
PDB header:antibiotic
Chain: A: PDB Molecule:bombinin h2;
PDBTitle: solution structure of bombinin h2 in dpc micelles
24c5ua7A_



not modelled 17.1 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb2;
PDBTitle: ocellatin-lb2, solution structure in sds micelle by nmr spectroscopy
25c5u9rA_



not modelled 17.1 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb2;
PDBTitle: ocellatin-lb2, solution structure in tfe by nmr spectroscopy
26c3rlbB_



not modelled 16.5 20
PDB header:thiamine-binding protein
Chain: B: PDB Molecule:thit;
PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter
27d1rh1a2



not modelled 15.1 25
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
28c4w6vA_



not modelled 14.9 15
PDB header:transport protein
Chain: A: PDB Molecule:di-/tripeptide transporter;
PDBTitle: crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
29c2dciA_



not modelled 14.6 36
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: nmr structure of influenza ha fusion peptide mutant w14a in2 dpc in ph5
30c4ypiF_



not modelled 14.1 23
PDB header:rna binding protein
Chain: F: PDB Molecule:polymerase cofactor vp35;
PDBTitle: structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35
31c4ypiG_



not modelled 14.1 23
PDB header:rna binding protein
Chain: G: PDB Molecule:polymerase cofactor vp35;
PDBTitle: structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35
32c2k21A_



not modelled 14.0 26
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
33c3phfX_



not modelled 13.8 23
PDB header:viral protein
Chain: X: PDB Molecule:envelope glycoprotein l;
PDBTitle: crystal structure of the epstein-barr virus gh and gl complex
34c5ua8A_



not modelled 13.7 70
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-f1;
PDBTitle: ocellatin-f1, solution structure in sds micelle by nmr spectroscopy
35c5u9sA_



not modelled 13.7 70
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-f1;
PDBTitle: ocellatin-f1, solution structure in tfe by nmr spectroscopy
36c5u9yA_



not modelled 13.7 70
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-k1;
PDBTitle: ocellatin-f1
37c5u9qA_



not modelled 13.5 70
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb1;
PDBTitle: ocellatin-lb1
38c5u9vA_



not modelled 13.5 70
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb1;
PDBTitle: ocellatin-lb1, solution structure in dpc micelle by nmr spectroscopy
39c5ua6A_



not modelled 13.5 70
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb1;
PDBTitle: ocellatin-lb1, solution structure in sds micelle by nmr spectroscopy
40c2ndjA_



not modelled 13.3 21
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
41c5a40C_



not modelled 13.1 13
PDB header:transport protein
Chain: C: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
42c6e8wC_



not modelled 12.2 15
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: mper-tm domain of hiv-1 envelope glycoprotein (env)
43c5egiB_



not modelled 12.0 16
PDB header:membrane protein
Chain: B: PDB Molecule:uncharacterized protein y57a10a.10;
PDBTitle: structure of a trimeric intracellular cation channel from c. elegans2 with bound ca2+
44c2m0qA_



not modelled 11.1 26
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
45c2jrdA_



not modelled 11.0 36
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: influenza hemagglutinin fusion domain mutant f9a
46c4dveA_



not modelled 10.0 13
PDB header:transport protein
Chain: A: PDB Molecule:biotin transporter bioy;
PDBTitle: crystal structure at 2.1 a of the s-component for biotin from an ecf-2 type abc transporter
47c6g9xB_



not modelled 10.0 12
PDB header:membrane protein
Chain: B: PDB Molecule:major facilitator superfamily mfs_1;
PDBTitle: crystal structure of a mfs transporter at 2.54 angstroem resolution
48c5eh6A_



not modelled 9.3 29
PDB header:membrane protein
Chain: A: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane monomer in2 lipidic cubic phase
49c5eh4C_



not modelled 9.3 29
PDB header:membrane protein
Chain: C: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane dimer in lipidic2 cubic phase
50c5eh4D_



not modelled 9.3 29
PDB header:membrane protein
Chain: D: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane dimer in lipidic2 cubic phase
51c5eh4A_



not modelled 9.3 29
PDB header:membrane protein
Chain: A: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane dimer in lipidic2 cubic phase
52c5eh4B_



not modelled 9.3 29
PDB header:membrane protein
Chain: B: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane dimer in lipidic2 cubic phase
53c5edlA_



not modelled 9.0 26
PDB header:transport protein
Chain: A: PDB Molecule:putative hmp/thiamine permease protein ykoe;
PDBTitle: crystal structure of an s-component of ecf transporter
54c2ks1B_



not modelled 8.8 23
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
55c5v2sA_



not modelled 8.7 20
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
56c3b9yA_



not modelled 8.5 25
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
57c6humQ_



not modelled 7.9 27
PDB header:proton transport
Chain: Q: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit q
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
58c2ifmA_



not modelled 7.8 36
PDB header:virus
Chain: A: PDB Molecule:pf1 filamentous bacteriophage;
PDBTitle: pf1 filamentous bacteriophage: refinement of a molecular2 model by simulated annealing using 3.3 angstroms3 resolution x-ray fibre diffraction data
59c1ql1A_



not modelled 7.8 36
PDB header:virus
Chain: A: PDB Molecule:pf1 bacteriophage coat protein b;
PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly
60c5zjiI_



not modelled 7.3 25
PDB header:membrane protein
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: structure of photosystem i supercomplex with light-harvesting2 complexes i and ii
61d2axtj1



not modelled 7.1 28
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
62c3a0hJ_



not modelled 7.1 28
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
63c1ciiA_



not modelled 6.8 18
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
64d1n2fa_



not modelled 6.1 12
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
65c5nikK_



not modelled 6.1 13
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
66d1wj7a1



not modelled 6.0 21
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
67c4nozA_



not modelled 5.8 18
PDB header:protein binding
Chain: A: PDB Molecule:organic hydroperoxide resistance protein;
PDBTitle: crystal structure of an organic hydroperoxide resistance protein from2 burkholderia cenocepacia
68c5d7tC_



not modelled 5.7 12
PDB header:transport protein
Chain: C: PDB Molecule:s-component for folate;
PDBTitle: folate ecf transporter: apo state
69c2mp8A_



not modelled 5.6 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:nkr-5-3b;
PDBTitle: nmr structure of nkr-5-3b
70c2kncB_



not modelled 5.4 17
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

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Transmembrane helix prediction 

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