Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1873_(-)_2123181_2123618
DateFri Aug 2 13:30:48 BST 2019
Unique Job ID45756619547c307b
SequenceMKSASDPFDL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.728 Y:36.337 Z:40.484
Model (left) based on template d2jeka1
Top template information
Fold:Rv1873-like
Superfamily:Rv1873-like
Family:Rv1873-like
Confidence and coverage
Confidence:100.0% Coverage: 97%
140 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2jeka1
100.0 100
Fold:Rv1873-like
Superfamily:Rv1873-like
Family:Rv1873-like
2c6jo52_
36.2 59
PDB header:photosynthesis
Chain: 2: PDB Molecule:chlorophyll a-b binding protein, chloroplastic;
PDBTitle: structure of the green algal photosystem i supercomplex with light-2 harvesting complex i
3c5cwuC_
27.0 19
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin nup188;
PDBTitle: crystal structure of chaetomium thermophilum nup188 tail domain
4c4trbA_
26.6 20
PDB header:transferase
Chain: A: PDB Molecule:purine phosphoribosyltransferase (gpt-1);
PDBTitle: sulfolobus solfataricus adenine phosphoribosyltransferase
5c2mg3A_
26.2 29
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the membrane2 proximal external region of hiv-1 gp41 in the presence of3 dodecylphosphocholine micelles
6c2mg2A_
25.1 29
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane protein gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the membrane2 proximal external region of hiv-1 gp41 in the presence of3 hexafluoroisopropanol
7c5aonB_
24.6 20
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
8c3ff5B_
22.8 20
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 14;
PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p
9c5u3kC_
22.6 29
PDB header:immune system/viral protein
Chain: C: PDB Molecule:gp41 mper peptide;
PDBTitle: crystal structure of dh511.2 fab in complex with hiv-1 gp41 mper 662-2 683 peptide
10c5u3lC_
22.4 29
PDB header:immune system/viral protein
Chain: C: PDB Molecule:gp41 mper peptide;
PDBTitle: crystal structure of dh511.2 fab in complex with hiv-1 gp41 mper 670-2 683 peptide
11c5u3lP_
22.4 29
PDB header:immune system/viral protein
Chain: P: PDB Molecule:gp41 mper peptide;
PDBTitle: crystal structure of dh511.2 fab in complex with hiv-1 gp41 mper 670-2 683 peptide
12c3bsuF_
22.3 24
PDB header:hydrolase/rna/dna
Chain: F: PDB Molecule:ribonuclease h1;
PDBTitle: hybrid-binding domain of human rnase h1 in complex with 12-2 mer rna/dna
13d1b25a1
22.1 35
Fold:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Superfamily:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Family:Aldehyde ferredoxin oxidoreductase, C-terminal domains
14c5l87A_
20.8 20
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
15d1qhka_
20.3 29
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:N-terminal domain of RNase HI
16c4g6fF_
19.8 29
PDB header:immune system
Chain: F: PDB Molecule:gp41 mper peptide;
PDBTitle: crystal structure of 10e8 fab in complex with an hiv-1 gp41 peptide
17c5ghwP_
19.6 29
PDB header:immune system
Chain: P: PDB Molecule:endogenous retrovirus group k member 8 env polyprotein;
PDBTitle: crystal structure of broad neutralizing antibody 10e8 with long2 epitope bound
18c4g6fP_
19.3 29
PDB header:immune system
Chain: P: PDB Molecule:gp41 mper peptide;
PDBTitle: crystal structure of 10e8 fab in complex with an hiv-1 gp41 peptide
19c5u3kP_
19.2 29
PDB header:immune system/viral protein
Chain: P: PDB Molecule:gp41 mper peptide;
PDBTitle: crystal structure of dh511.2 fab in complex with hiv-1 gp41 mper 662-2 683 peptide
20c5u3nA_
19.2 29
PDB header:immune system/viral protein
Chain: A: PDB Molecule:gp41 mper peptide;
PDBTitle: crystal structure of dh511.12p fab in complex with hiv-1 gp41 mper2 peptide
21c2me2A_
not modelled 19.1 29
PDB header:membrane protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: hiv-1 gp41 clade c membrane proximal external region peptide in dpc2 micelle
22c5u3mA_
not modelled 19.0 29
PDB header:immune system/viral protein
Chain: A: PDB Molecule:gp41 mper peptide;
PDBTitle: crystal structure of dh511.11p fab in complex with hiv-1 gp41 mper2 peptide
23c4p4oA_
not modelled 19.0 23
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: crystal structure of leishmania infantum polymerase beta: ternary gap2 complex
24c2me1A_
not modelled 18.7 29
PDB header:membrane protein
Chain: A: PDB Molecule:gp41;
PDBTitle: hiv-1 gp41 clade b double alanine mutant membrane proximal external2 region peptide in dpc micelle
25c3g9rF_
not modelled 18.7 29
PDB header:viral protein
Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein and
PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain region in a2 putative prefusion conformation
26c1jauA_
not modelled 18.4 29
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane glycoprotein (gp41);
PDBTitle: nmr solution structure of the trp-rich peptide of hiv gp412 bound to dpc micelles
27c1javA_
not modelled 18.3 29
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane glycoprotein (gp41);
PDBTitle: average nmr solution structure of the trp-rich peptide of2 hiv gp41 bound to dpc micelles
28d1chka_
not modelled 18.3 16
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Chitosanase
29c2pv6A_
not modelled 18.2 29
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: hiv-1 gp41 membrane proximal ectodomain region peptide in2 dpc micelle
30c2me3A_
not modelled 17.8 29
PDB header:membrane protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: hiv-1 gp41 clade c membrane proximal external region peptide in dpc2 micelle
31c6mttP_
not modelled 17.7 29
PDB header:immune system
Chain: P: PDB Molecule:rv217 founder virus gp41 peptide;
PDBTitle: crystal structure of vrc46.01 fab in complex with gp41 peptide
32c2nctA_
not modelled 17.7 29
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the membrane2 proximal external region of hiv-1 gp41 in the presence of3 hexafluoroisopropanol
33c3anyB_
not modelled 17.7 23
PDB header:lyase
Chain: B: PDB Molecule:ethanolamine ammonia-lyase light chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and (r)-2-amino-1-propanol
34c2me4A_
not modelled 17.7 29
PDB header:membrane protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: hiv-1 gp41 clade c membrane proximal external region peptide in dpc2 micelle
35c2w85A_
not modelled 16.9 20
PDB header:protein transport
Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14;
PDBTitle: structure of pex14 in complex with pex19
36c3absD_
not modelled 16.9 23
PDB header:lyase
Chain: D: PDB Molecule:ethanolamine ammonia-lyase light chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with adeninylpentylcobalamin and ethanolamine
37c3bkhA_
not modelled 16.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
38c1ujwB_
not modelled 15.2 29
PDB header:transport protein/hydrolase
Chain: B: PDB Molecule:colicin e3;
PDBTitle: structure of the complex between btub and colicin e3 receptor binding2 domain
39d1mhyd_
not modelled 14.9 17
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
40c6abfC_
not modelled 14.9 23
PDB header:viral protein/rna
Chain: C: PDB Molecule:polymerase pb2;
PDBTitle: structure of influenza d virus polymerase bound to vrna promoter in2 mode b conformation (class b1)
41c2z0rA_
not modelled 14.6 55
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0547;
PDBTitle: crystal structure of hypothetical protein ttha0547
42c6gr8B_
not modelled 13.9 19
PDB header:transferase
Chain: B: PDB Molecule:inner centromere protein;
PDBTitle: human aurkc incenp complex bound to brd-7880
43c2kpqA_
not modelled 13.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of agrobacterium tumefaciens protein atu1219:2 northeast structural genomics consortium target att14
44c2z2uA_
not modelled 11.7 17
PDB header:metal binding protein
Chain: A: PDB Molecule:upf0026 protein mj0257;
PDBTitle: crystal structure of archaeal tyw1
45d1fs1b1
not modelled 11.7 36
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
46d1aora1
not modelled 11.6 22
Fold:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Superfamily:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Family:Aldehyde ferredoxin oxidoreductase, C-terminal domains
47c1b4nD_
not modelled 11.3 35
PDB header:oxidoreductase
Chain: D: PDB Molecule:formaldehyde ferredoxin oxidoreductase;
PDBTitle: formaldehyde ferredoxin oxidoreductase from pyrococcus furiosus,2 complexed with glutarate
48d2lisa_
not modelled 11.0 23
Fold:Fertilization protein
Superfamily:Fertilization protein
Family:Fertilization protein
49d2bgxa1
not modelled 10.8 20
Fold:PGBD-like
Superfamily:PGBD-like
Family:Peptidoglycan binding domain, PGBD
50c3n5bB_
not modelled 10.1 38
PDB header:transcription regulator
Chain: B: PDB Molecule:asr0485 protein;
PDBTitle: the complex of pii and pipx from anabaena
51c2lp7C_
not modelled 10.0 29
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of gp41-m-mat, a membrane associated mper trimer from hiv-12 gp41.
52d2o4ta1
not modelled 10.0 23
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
53c2xg8D_
not modelled 9.9 50
PDB header:transcription
Chain: D: PDB Molecule:pipx;
PDBTitle: structural basis of gene regulation by protein pii: the2 crystal complex of pii and pipx from synechococcus3 elongatus pcc 7942
54c5c2uA_
not modelled 9.9 20
PDB header:transport protein
Chain: A: PDB Molecule:nup54;
PDBTitle: ferredoxin-like domain of nucleoporin nup54 bound to a nanobody
55c3o3nB_
not modelled 9.7 18
PDB header:lyase
Chain: B: PDB Molecule:beta-subunit 2-hydroxyacyl-coa dehydratase;
PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa
56d1nexa1
not modelled 9.3 36
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
57d1fs2b1
not modelled 9.3 36
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
58d3lyna_
not modelled 9.2 23
Fold:Fertilization protein
Superfamily:Fertilization protein
Family:Fertilization protein
59c6e8wC_
not modelled 9.2 29
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: mper-tm domain of hiv-1 envelope glycoprotein (env)
60d2ovra1
not modelled 9.2 36
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
61d1nkda_
not modelled 8.9 23
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
62d1utra_
not modelled 8.9 24
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
63d1idra_
not modelled 8.8 5
Fold:Globin-like
Superfamily:Globin-like
Family:Truncated hemoglobin
64c1nomA_
not modelled 8.6 30
PDB header:nucleotidyltransferase
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar)
65c4wrtC_
not modelled 8.2 18
PDB header:transferase/rna
Chain: C: PDB Molecule:pb2;
PDBTitle: crystal structure of influenza b polymerase with bound vrna promoter2 (form flub2)
66c3jcuR_
not modelled 8.0 43
PDB header:membrane protein
Chain: R: PDB Molecule:chlorophyll a-b binding protein 29 kd (cp29);
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
67c6igz2_
not modelled 7.8 40
PDB header:plant protein
Chain: 2: PDB Molecule:lhca-c;
PDBTitle: structure of psi-lhci
68d1rwta_
not modelled 7.7 29
Fold:Chlorophyll a-b binding protein
Superfamily:Chlorophyll a-b binding protein
Family:Chlorophyll a-b binding protein
69c5y1zB_
not modelled 7.6 12
PDB header:transcription
Chain: B: PDB Molecule:drebrin;
PDBTitle: crystal structure of zmynd8 phd-bromo-pwwp tandem in complex with2 drebrin adf-h domain
70c2yx0A_
not modelled 7.5 28
PDB header:metal binding protein
Chain: A: PDB Molecule:radical sam enzyme;
PDBTitle: crystal structure of p. horikoshii tyw1
71c1lt1G_
not modelled 7.3 26
PDB header:de novo protein
Chain: G: PDB Molecule:l13g-df1;
PDBTitle: sliding helix induced change of coordination geometry in a2 model di-mn(ii) protein
72c2ct6A_
not modelled 7.2 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like
PDBTitle: solution structure of the sh3 domain-binding glutamic acid-2 rich-like protein 2
73c1kdhA_
not modelled 7.2 23
PDB header:transferase/dna
Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
74c2ekkA_
not modelled 7.2 50
PDB header:protein binding
Chain: A: PDB Molecule:uba domain from e3 ubiquitin-protein ligase
PDBTitle: solution structure of ruh-074, a human uba domain
75d1qx8a_
not modelled 7.2 23
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
76d1l0nk_
not modelled 7.2 36
Fold:Single transmembrane helix
Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
77d1v54i_
not modelled 7.1 83
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIc
Family:Mitochondrial cytochrome c oxidase subunit VIc
78c5fmzF_
not modelled 7.1 19
PDB header:transcription
Chain: F: PDB Molecule:polymerase basic protein 2;
PDBTitle: crystal structure of influenza b polymerase with bound 5' vrna
79c4wsaC_
not modelled 7.1 19
PDB header:transferase/rna
Chain: C: PDB Molecule:pb2;
PDBTitle: crystal structure of influenza b polymerase bound to the vrna promoter2 (flub1 form)
80d1jmsa3
not modelled 7.0 23
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
81d1utga_
not modelled 7.0 12
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
82c6ijj7_
not modelled 6.9 36
PDB header:membrane protein
Chain: 7: PDB Molecule:lhca7;
PDBTitle: photosystem i of chlamydomonas reinhardtii
83c6abeC_
not modelled 6.9 23
PDB header:viral protein/rna
Chain: C: PDB Molecule:polymerase pb2;
PDBTitle: structure of influenza d virus polymerase bound to vrna promoter in2 mode b conformation (class b2)
84c8iczA_
not modelled 6.8 29
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7));
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)
85c3e21A_
not modelled 6.7 36
PDB header:apoptosis
Chain: A: PDB Molecule:fas-associated factor 1;
PDBTitle: crystal structure of faf-1 uba domain
86d2fxta1
not modelled 6.6 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
87c6igz5_
not modelled 6.5 26
PDB header:plant protein
Chain: 5: PDB Molecule:lhca-a;
PDBTitle: structure of psi-lhci
88c5oold_
not modelled 6.5 13
PDB header:ribosome
Chain: D: PDB Molecule:39s ribosomal protein l2, mitochondrial;
PDBTitle: structure of a native assembly intermediate of the human mitochondrial2 ribosome with unfolded interfacial rrna
89c2wdtA_
not modelled 6.4 13
PDB header:hydrolase/protein binding
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase l3;
PDBTitle: crystal structure of plasmodium falciparum uchl3 in complex2 with the suicide inhibitor ubvme
90c4xgqD_
not modelled 6.4 29
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
91c3auoB_
not modelled 6.4 29
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
92c3h01A_
not modelled 6.2 29
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp41 fusion2 intermediate
93d1ccda_
not modelled 6.2 24
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
94c4xgqB_
not modelled 6.2 29
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
95d1ufza_
not modelled 6.1 31
Fold:RuvA C-terminal domain-like
Superfamily:HBS1-like domain
Family:HBS1-like domain
96c3l9kX_
not modelled 6.1 26
PDB header:motor protein
Chain: X: PDB Molecule:dynein intermediate chain, cytosolic;
PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure
97c3l9kZ_
not modelled 6.1 26
PDB header:motor protein
Chain: Z: PDB Molecule:dynein intermediate chain, cytosolic;
PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure
98c3x38B_
not modelled 6.1 15
PDB header:replication regulator
Chain: B: PDB Molecule:mitochondrial morphogenesis protein sld7;
PDBTitle: crystal structure of the c-terminal domain of sld7
99d1h72c1
not modelled 6.1 18
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain

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