Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1874_(-)_2123691_2124377
DateFri Aug 2 13:30:49 BST 2019
Unique Job ID300c9df6f9be7ce9
SequenceVLMRPEPDDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.897 Y:43.646 Z:40.644
Model (left) based on template c3hfkB_
Top template information
PDB header:isomerase
Chain: B: PDB Molecule:4-methylmuconolactone methylisomerase;
PDBTitle: crystal structure of 4-methylmuconolactone methylisomerase (h52a) in2 complex with 4-methylmuconolactone
Confidence and coverage
Confidence: 99.9% Coverage: 43%
98 residues ( 43% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3hfkB_



99.9 15
PDB header:isomerase
Chain: B: PDB Molecule:4-methylmuconolactone methylisomerase;
PDBTitle: crystal structure of 4-methylmuconolactone methylisomerase (h52a) in2 complex with 4-methylmuconolactone
2d2ftra1



99.4 11
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:EthD-like
3c3bf4B_



98.1 10
PDB header:unknown function
Chain: B: PDB Molecule:ethyl tert-butyl ether degradation ethd protein;
PDBTitle: crystal structure of an ethd-like protein (reut_b5694) from ralstonia2 eutropha jmp134 at 2.10 a resolution
4d2ifxa1



95.8 15
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:MmlI-like
5c3dcaC_



95.8 12
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:rpa0582;
PDBTitle: crystal structure of the rpa0582- protein of unknown2 function from rhodopseudomonas palustris- a structural3 genomics target
6d1rjja_



94.8 7
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Plant stress-induced protein
7d1tr0a_



91.2 16
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Plant stress-induced protein
8c2jdjB_



90.8 13
PDB header:biosynthetic protein
Chain: B: PDB Molecule:redy-like protein;
PDBTitle: crystal structure of hapk from hahella chejuensis
9c5y02D_



90.2 15
PDB header:lyase
Chain: D: PDB Molecule:hydroxynitrile lyase;
PDBTitle: c-terminal peptide depleted mutant of hydroxynitrile lyase from2 passiflora edulis (pehnl) bound with (r)-mandelonitrile
10c2qycA_



89.7 11
PDB header:unknown function
Chain: A: PDB Molecule:ferredoxin-like protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein (bb1511) from2 bordetella bronchiseptica rb50 at 1.90 a resolution
11c3bguA_



89.2 16
PDB header:unknown function
Chain: A: PDB Molecule:ferredoxin-like protein of unknown function;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (tfu_0763) from thermobifida fusca yx at 1.50 a resolution
12c3bb5B_



85.4 12
PDB header:unknown function
Chain: B: PDB Molecule:stress responsive alpha-beta protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (jann_3925) from jannaschia sp. ccs1 at 2.30 a resolution
13d1q4ra_



83.0 9
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Plant stress-induced protein
14c3kngA_



75.1 5
PDB header:oxidoreductase
Chain: A: PDB Molecule:snoab;
PDBTitle: crystal structure of snoab, a cofactor-independent oxygenase2 from streptomyces nogalater, determined to 1.9 resolution
15c3fmbA_



68.8 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dimeric protein of unknown function and ferredoxin-like
PDBTitle: crystal structure of dimeric protein of unknown function and2 ferredoxin-like fold (yp_212648.1) from bacteroides fragilis nctc3 9343 at 1.85 a resolution
16d2fiua1



67.4 12
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Atu0297-like
17d1x7va_



67.1 8
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PA3566-like
18c4dpoA_



64.1 11
PDB header:unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: crystal structure of a conserved protein mm_1583 from methanosarcina2 mazei go1
19c4zosA_



63.8 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ye0340 from yersinia enterocolitica subsp.
PDBTitle: 2.20 angstrom resolution crystal structure of protein ye0340 of2 unidentified function from yersinia enterocolitica subsp.3 enterocolitica 8081]
20c3hx9B_



62.5 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:protein rv3592;
PDBTitle: structure of heme-degrader, mhud (rv3592), from2 mycobacterium tuberculosis with two hemes bound in its3 active site
21c3bn7A_



not modelled 61.1 8
PDB header:unknown function
Chain: A: PDB Molecule:ferredoxin-like protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein (cc_2267) from2 caulobacter crescentus cb15 at 1.64 a resolution
22c3lo3E_



not modelled 53.3 14
PDB header:structure genomics, unknown function
Chain: E: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved functionally unknown protein from2 colwellia psychrerythraea 34h.
23c2bbeA_



not modelled 48.7 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein so0527;
PDBTitle: crystal structure of protein so0527 from shewanella oneidensis
24c3zphA_



not modelled 44.7 11
PDB header:isomerase
Chain: A: PDB Molecule:chalcone isomerase;
PDBTitle: bacterial chalcone isomerase in closed conformation from2 eubacterium ramulus at 2.8 a resolution
25d1tuva_



not modelled 44.4 13
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PA3566-like
26c2fb0A_



not modelled 43.3 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of conserved protein of unknown function from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution, possible3 oxidoreductase
27c3f44A_



not modelled 37.5 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative monooxygenase;
PDBTitle: crystal structure of putative monooxygenase (yp_193413.1) from2 lactobacillus acidophilus ncfm at 1.55 a resolution
28d1y0ha_



not modelled 36.2 12
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PA3566-like
29d2pd1a1



not modelled 33.3 13
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PA3566-like
30d2omoa1



not modelled 23.0 8
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PA3566-like
31d2zdpa1



not modelled 23.0 11
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PG130-like
32c3bm7A_



not modelled 18.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein of unknown function with ferredoxin-like fold;
PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (cc_2132) from caulobacter crescentus cb15 at 1.35 a resolution
33c3bdeA_



not modelled 17.2 4
PDB header:unknown function
Chain: A: PDB Molecule:mll5499 protein;
PDBTitle: crystal structure of a dabb family protein with a ferredoxin-like fold2 (mll5499) from mesorhizobium loti maff303099 at 1.79 a resolution
34c2gffB_



not modelled 16.5 9
PDB header:sugar binding protein
Chain: B: PDB Molecule:lsrg protein;
PDBTitle: crystal structure of yersinia pestis lsrg
35c3h6pD_



not modelled 16.4 21
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:esat-6-like protein esxr;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis
36c3q4hB_



not modelled 15.7 14
PDB header:metal transport
Chain: B: PDB Molecule:low molecular weight protein antigen 7;
PDBTitle: crystal structure of the mycobacterium smegmatis esxgh complex2 (msmeg_0620-msmeg_0621)
37c2bjeA_



not modelled 15.6 29
PDB header:hydrolase
Chain: A: PDB Molecule:acylphosphatase;
PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group
38d1dqaa1



not modelled 15.4 19
Fold:Ferredoxin-like
Superfamily:NAD-binding domain of HMG-CoA reductase
Family:NAD-binding domain of HMG-CoA reductase
39c3fgvB_



not modelled 15.3 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized protein with ferredoxin-like fold;
PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (spo2313) from silicibacter pomeroyi dss-3 at 1.30 a resolution
40c3gz7B_



not modelled 15.3 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:putative antibiotic biosynthesis monooxygenase;
PDBTitle: crystal structure of putative antibiotic biosynthesis monooxygenase2 (np_888398.1) from bordetella bronchiseptica at 2.15 a resolution
41c5b0aA_



not modelled 14.6 13
PDB header:lyase
Chain: A: PDB Molecule:olivetolic acid cyclase;
PDBTitle: polyketide cyclase oac from cannabis sativa, h5q mutant
42c2jrtA_



not modelled 14.0 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5
43c5f9pA_



not modelled 13.4 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:anthrone oxidase-like protein;
PDBTitle: crystal structure study of anthrone oxidase-like protein
44c6d0hA_



not modelled 12.7 12
PDB header:toxin
Chain: A: PDB Molecule:part: cog5654 (res domain) toxin;
PDBTitle: part: prs adp-ribosylating toxin bound to cognate antitoxin pars
45d2oa4a1



not modelled 12.7 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:SPO1678-like
46c2rilA_



not modelled 12.4 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:antibiotic biosynthesis monooxygenase;
PDBTitle: crystal structure of a putative monooxygenase (yp_001095275.1) from2 shewanella loihica pv-4 at 1.26 a resolution
47c2kj5A_



not modelled 12.1 5
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phage integrase;
PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein nmul_a0064 from nitrosospira multiformis, northeast3 structural genomics consortium target nmr46c
48d1kyfa2



not modelled 11.8 16
Fold:Subdomain of clathrin and coatomer appendage domain
Superfamily:Subdomain of clathrin and coatomer appendage domain
Family:Clathrin adaptor appendage, alpha and beta chain-specific domain
49c4dn9B_



not modelled 11.5 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:antibiotic biosynthesis monooxygenase;
PDBTitle: crystal structure of putative antibiotic biosynthesis monooxygenase2 from chloroflexus aurantiacus j-10-fl
50c2n5xA_



not modelled 10.8 21
PDB header:chaperone
Chain: A: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: c-terminal domain of cdc37 cochaperone
51c2mbhB_



not modelled 10.3 27
PDB header:transcription
Chain: B: PDB Molecule:krueppel-like factor 1;
PDBTitle: nmr structure of eklf(22-40)/ubiquitin complex
52c5x90B_



not modelled 9.7 11
PDB header:protein transport
Chain: B: PDB Molecule:icmw;
PDBTitle: structure of dotl(656-783)-icms-icmw-lvga derived from legionella2 pneumophila
53d2hg6a1



not modelled 9.5 22
Fold:PA1123-like
Superfamily:PA1123-like
Family:PA1123-like
54c1cojA_



not modelled 8.8 4
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (superoxide dismutase);
PDBTitle: fe-sod from aquifex pyrophilus, a hyperthermophilic bacterium
55c5k8zB_



not modelled 8.1 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:chlorite dismutase;
PDBTitle: crystal structure of dimeric chlorite dismutase from cyanothece sp.2 pcc7425 (ph 8.5)
56c3kkfA_



not modelled 7.9 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative antibiotic biosynthesis monooxygenase;
PDBTitle: crystal structure of putative antibiotic biosynthesis monooxygenase2 (np_810307.1) from bacteriodes thetaiotaomicron vpi-5482 at 1.30 a3 resolution
57d2acya_



not modelled 7.7 24
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
58d1mhna_



not modelled 7.3 14
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
59c1i7fA_



not modelled 7.0 18
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 33;
PDBTitle: crystal structure of the hsp33 domain with constitutive chaperone2 activity
60c2omoC_



not modelled 6.7 8
PDB header:oxidoreductase
Chain: C: PDB Molecule:duf176;
PDBTitle: putative antibiotic biosynthesis monooxygenase from nitrosomonas2 europaea
61c2gpcB_



not modelled 6.6 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:iron superoxide dismutase;
PDBTitle: the crystal structure of the enzyme fe-superoxide dismutase2 from trypanosoma cruzi
62d1whza_



not modelled 6.5 25
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YcfA-like
63d1iuja_



not modelled 6.4 5
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PG130-like
64c6gw6A_



not modelled 6.4 20
PDB header:toxin
Chain: A: PDB Molecule:res toxin;
PDBTitle: structure of the pseudomonas putida res-xre toxin-antitoxin complex
65d1xbwa_



not modelled 6.4 13
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PG130-like
66c3al6C_



not modelled 6.4 12
PDB header:unknown function
Chain: C: PDB Molecule:jmjc domain-containing protein c2orf60;
PDBTitle: crystal structure of human tyw5
67c5cuvB_



not modelled 6.2 7
PDB header:metal binding protein
Chain: B: PDB Molecule:acidocalcisomal pyrophosphatase;
PDBTitle: crystal structure of trypanosoma cruzi vacuolar soluble2 pyrophosphatases in apo form
68c4ou6A_



not modelled 6.1 30
PDB header:replication/dna
Chain: A: PDB Molecule:primosomal protein 1;
PDBTitle: crystal structure of dnat84-153-dt10 ssdna complex form 1

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