Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1881c_(lppE)_2131914_2132336
DateFri Aug 2 13:30:49 BST 2019
Unique Job IDc609a97bafd39f9a
SequenceVCNRLVTVTG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.939 Y:32.739 Z:45.098
Model (left) based on template c4xinB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:lpqh orthologue;
PDBTitle: x-ray crystal structure of an lpqh orthologue from mycobacterium avium
Confidence and coverage
Confidence:100.0% Coverage: 81%
114 residues ( 81% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xinB_



100.0 28
PDB header:unknown function
Chain: B: PDB Molecule:lpqh orthologue;
PDBTitle: x-ray crystal structure of an lpqh orthologue from mycobacterium avium
2c4zjmA_



100.0 23
PDB header:unknown function
Chain: A: PDB Molecule:lipoprotein lpqh;
PDBTitle: crystal structure of mycobacterium tuberculosis lpqh (rv3763)
3d1h4ga_



42.3 25
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
4d1hixa_



39.7 22
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
5d1m4wa_



39.6 19
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
6c3uafA_



35.9 14
PDB header:protein binding
Chain: A: PDB Molecule:ttr-52;
PDBTitle: crystal structure of a ttr-52 mutant of c. elegans
7c3wp6A_



35.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:cdbfv;
PDBTitle: the complex structure of cdbfv e109a with xylotriose
8d1xnka1



28.8 31
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
9c2l7yA_



27.4 10
PDB header:structural protein
Chain: A: PDB Molecule:putative endo-beta-n-acetylglucosaminidase;
PDBTitle: solution structure of a putative surface protein
10c4uznA_



25.7 31
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-glucanase (celulase b);
PDBTitle: the native structure of the family 46 carbohydrate-binding2 module (cbm46) of endo-beta-1,4-glucanase b (cel5b) from3 bacillus halodurans
11c2vulA_



22.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:gh11 xylanase;
PDBTitle: thermostable mutant of environmentally isolated gh112 xylanase
12c1vraA_



20.3 31
PDB header:transferase
Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj;
PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
13d1ynaa_



19.6 25
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
14c3mn8A_



19.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
15c1uwyA_



17.7 12
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
16c4f5cF_



15.9 16
PDB header:hydrolase/viral protein
Chain: F: PDB Molecule:prcv spike protein;
PDBTitle: crystal structure of the spike receptor binding domain of a porcine2 respiratory coronavirus in complex with the pig aminopeptidase n3 ectodomain
17c5vqjA_



15.8 23
PDB header:hydrolase
Chain: A: PDB Molecule:exo-beta-1,4-xylanase;
PDBTitle: discovery of a first gh11 exo-1,4-beta-xylanase from a diverse2 microbial sugar cane bagasse composting community
18c4q98A_



14.8 13
PDB header:cell adhesion
Chain: A: PDB Molecule:major fimbrial subunit protein;
PDBTitle: crystal structure of a fimbrilin (fima) from porphyromonas gingivalis2 w83 at 1.30 a resolution (psi community target, nakayama)
19c6qt9Y_



14.2 24
PDB header:virus
Chain: Y: PDB Molecule:orf 31;
PDBTitle: cryo-em structure of sh1 full particle.
20c2dcjA_



13.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:xylanase j;
PDBTitle: a two-domain structure of alkaliphilic xynj from bacillus sp. 41m-1
21c5o6vC_



not modelled 12.2 12
PDB header:virus
Chain: C: PDB Molecule:envelope protein;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
22d1pvxa_



not modelled 12.0 25
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
23d2dfba1



not modelled 12.0 18
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
24d1te1b_



not modelled 11.1 25
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
25d1uwya1



not modelled 10.9 12
Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
26c4v2xA_



not modelled 10.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-glucanase (cellulase b);
PDBTitle: high resolution structure of the full length tri-modular2 endo-beta-1,4-glucanase b (cel5b) from bacillus halodurans
27d1svba2



not modelled 10.7 14
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
28d1ljma_



not modelled 10.6 28
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:RUNT domain
29c3mxnB_



not modelled 10.1 20
PDB header:replication
Chain: B: PDB Molecule:recq-mediated genome instability protein 2;
PDBTitle: crystal structure of the rmi core complex
30c5xxzB_



not modelled 10.0 11
PDB header:lyase
Chain: B: PDB Molecule:chemokine protease c;
PDBTitle: crystal structure of a serine protease from streptococcus species
31c4m03A_



not modelled 9.6 15
PDB header:calcium binding protein
Chain: A: PDB Molecule:serine-rich adhesin for platelets;
PDBTitle: c-terminal fragment(residues 576-751) of binding region of srap
32c2g16A_



not modelled 9.0 20
PDB header:luminescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of s65a y66s gfp variant after backbone2 fragmentation
33c3ls1A_



not modelled 8.5 21
PDB header:photosynthesis
Chain: A: PDB Molecule:sll1638 protein;
PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+
34d1ok8a2



not modelled 8.3 6
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
35c1urzC_



not modelled 8.1 13
PDB header:virus/viral protein
Chain: C: PDB Molecule:envelope protein;
PDBTitle: low ph induced, membrane fusion conformation of the2 envelope protein of tick-borne encephalitis virus
36c2ovsB_



not modelled 8.1 10
PDB header:gene regulation, ligand binding protein
Chain: B: PDB Molecule:l0044;
PDBTitle: crystal strcuture of a type three secretion system protein
37d2go8a1



not modelled 7.4 21
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PG130-like
38c1p58C_



not modelled 7.2 7
PDB header:virus
Chain: C: PDB Molecule:major envelope protein e;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
39c4whiA_



not modelled 7.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of c-terminal domain of penicillin binding protein2 rv0907
40c4m02A_



not modelled 6.7 13
PDB header:calcium binding protein
Chain: A: PDB Molecule:serine-rich adhesin for platelets;
PDBTitle: middle fragment(residues 494-663) of the binding region of srap
41d1ee6a_



not modelled 6.6 17
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Pectate lyase-like
42c6b6iD_



not modelled 6.6 31
PDB header:viral protein,protease
Chain: D: PDB Molecule:3c-like protease;
PDBTitle: 2.4a resolution structure of human norovirus gii.4 protease
43c3b90A_



not modelled 6.3 14
PDB header:lyase
Chain: A: PDB Molecule:endo-pectate lyase;
PDBTitle: crystal structure of the catalytic domain of pectate lyase peli from2 erwinia chrysanthemi
44d1cwva2



not modelled 6.2 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
45c2of6C_



not modelled 6.1 10
PDB header:virus
Chain: C: PDB Molecule:envelope glycoprotein e;
PDBTitle: structure of immature west nile virus
46d1xnda_



not modelled 5.7 20
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
47d1wv3a1



not modelled 5.5 44
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:EssC N-terminal domain-like
48d1igoa_



not modelled 5.4 16
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
49c5u6fA_



not modelled 5.3 6
PDB header:cell adhesion
Chain: A: PDB Molecule:lpxtg-motif cell wall anchor domain protein;
PDBTitle: bacterial adhesin from mobiluncus mulieris containing intramolecular2 disulfide, isopeptide, and ester bond cross-links (space group p21)
50c1ywkE_



not modelled 5.3 14
PDB header:isomerase
Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol-
PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis
51d1oa3a_



not modelled 5.3 17
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
52d2jeka1



not modelled 5.2 13
Fold:Rv1873-like
Superfamily:Rv1873-like
Family:Rv1873-like
53c2c1fA_



not modelled 5.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:bifunctional endo-1,4-beta-xylanase a;
PDBTitle: the structure of the family 11 xylanase from neocallimastix2 patriciarum
54c1as5A_



not modelled 5.1 33
PDB header:neurotoxin
Chain: A: PDB Molecule:conotoxin y-piiie;
PDBTitle: solution structure of conotoxin y-piiie from conus2 purpurascens, nmr, 14 structures

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