Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1884c_(rpfC)_2133738_2134268
DateFri Aug 2 13:30:50 BST 2019
Unique Job ID85d272def37e8fe1
SequenceVHPLPADHGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.307 Y:32.085 Z:28.410
Model (left) based on template c4ow1A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:resuscitation-promoting factor rpfc;
PDBTitle: crystal structure of resuscitation promoting factor c
Confidence and coverage
Confidence:100.0% Coverage: 49%
86 residues ( 49% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 62% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ow1A_
100.0 100
PDB header:hydrolase
Chain: A: PDB Molecule:resuscitation-promoting factor rpfc;
PDBTitle: crystal structure of resuscitation promoting factor c
2c1xsfA_
100.0 48
PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis
3d1xsfa1
100.0 52
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:RPF-like
4c3eo5A_
100.0 50
PDB header:cell adhesion
Chain: A: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: crystal structure of the resuscitation promoting factor rpfb
5c5e27B_
100.0 52
PDB header:cell adhesion
Chain: B: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains
6c2z2fA_
97.7 29
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme c-2;
PDBTitle: x-ray crystal structure of bovine stomach lysozyme
7c2fbdB_
97.7 25
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme 1;
PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.
8d1yroa1
97.7 26
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
9d1hfxa_
97.6 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
10d1b9oa_
97.6 23
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
11d1iiza_
97.6 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
12d1fkqa_
97.6 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
13d1f6sa_
97.4 23
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
14d1alca_
97.4 25
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
15d1gd6a_
97.4 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
16d1jsea_
97.4 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
17c2goiC_
97.3 25
PDB header:cell adhesion, sugar binding protein
Chain: C: PDB Molecule:sperm lysozyme-like protein 1;
PDBTitle: crystal structure of mouse sperm c-type lysozyme-like protein 1
18d1ivma_
97.3 35
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
19d1lsga1
97.3 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
20d2nwdx1
97.2 38
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
21d1ghla_
not modelled 97.2 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
22d2vb1a1
not modelled 97.2 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
23d1hhla_
not modelled 97.2 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
24d1qqya_
not modelled 97.1 30
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
25d1juga_
not modelled 97.1 33
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
26d2eqla_
not modelled 96.9 30
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
27c3bkhA_
not modelled 96.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
28d1lmqa_
not modelled 96.8 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
29c3w6dB_
not modelled 96.5 23
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme-like chitinolytic enzyme;
PDBTitle: crystal structure of catalytic domain of chitinase from ralstonia sp.2 a-471 (e141q) in complex with tetrasaccharide
30d1qsaa2
not modelled 96.3 26
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
31d1gbsa_
not modelled 96.0 25
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:G-type lysozyme
32c2y8pA_
not modelled 95.7 30
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
33c4cfoB_
not modelled 95.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:mltc;
PDBTitle: structure of lytic transglycosylase mltc from escherichia2 coli in complex with tetrasaccharide at 2.9 a resolution.
34c3mgwA_
not modelled 94.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme g;
PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme
35c4oz9A_
not modelled 94.6 24
PDB header:lyase
Chain: A: PDB Molecule:membrane-bound lytic murein transglycosylase f;
PDBTitle: crystal structure of mltf from pseudomonas aeruginosa complexed with2 isoleucine
36c3gxkB_
not modelled 94.5 21
PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod (gadus2 morhua l.) in complex with nag oligomers sheds new light on substrate3 binding and the catalytic mechanism. native structure to 1.9
37c4xp8A_
not modelled 93.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:etga protein;
PDBTitle: structure of etga d60n mutant
38c6cfcA_
not modelled 85.2 29
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of soluble lytic transglycosylase cj0843 of2 campylobacter jejuni in complex with bulgecin a
39c1slyA_
not modelled 83.4 26
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
40c6fcqA_
not modelled 83.3 27
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic murein transglycosylase;
PDBTitle: the x-ray structure of lytic transglycosylase slt inactive mutant2 e503q from pseudomonas aeruginosa in complex with bulgecin a
41c3ct5A_
not modelled 68.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail
42c4anrA_
not modelled 63.5 23
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic transglycosylase b;
PDBTitle: crystal structure of soluble lytic transglycosylase sltb12 from pseudomonas aeruginosa
43d1qusa_
not modelled 57.4 21
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
44c5anzA_
not modelled 55.6 28
PDB header:hydrolase
Chain: A: PDB Molecule:soluble lytic transglycosylase b3;
PDBTitle: crystal structure of sltb3 from pseudomonas aeruginosa.
45d1eh9a2
not modelled 49.6 22
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
46c4nooA_
not modelled 49.5 29
PDB header:immune system
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: molecular mechanism for self-protection against type vi secretion2 system in vibrio cholerae
47d1am7a_
not modelled 48.9 27
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Lambda lysozyme
48c2kukA_
not modelled 34.1 54
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
49c3csqC_
not modelled 24.2 20
PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
50c2jwmA_
not modelled 19.6 55
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: nmr spatial srtucture of ternary complex kalata b7/mn2+/dpc2 micelle
51d1h72c1
not modelled 19.4 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
52c2dqaA_
not modelled 16.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of tapes japonica lysozyme
53c6g67B_
not modelled 14.2 71
PDB header:de novo protein
Chain: B: PDB Molecule:cc-type2-ii;
PDBTitle: crystal structure of a parallel eight-helix coiled coil cc-type2-ii
54c6g67A_
not modelled 14.2 71
PDB header:de novo protein
Chain: A: PDB Molecule:cc-type2-ii;
PDBTitle: crystal structure of a parallel eight-helix coiled coil cc-type2-ii
55c2mw0A_
not modelled 14.2 55
PDB header:protein binding
Chain: A: PDB Molecule:kalata b7;
PDBTitle: kalata b7 ser mutant
56c4fdyA_
not modelled 13.5 24
PDB header:hydrolase
Chain: A: PDB Molecule:similar to lipoprotein, nlp/p60 family;
PDBTitle: crystal structure of a similar to lipoprotein, nlp/p60 family2 (sav0400) from staphylococcus aureus subsp. aureus mu50 at 2.23 a3 resolution
57c4oltA_
not modelled 11.7 25
PDB header:hydrolase
Chain: A: PDB Molecule:chitosanase;
PDBTitle: chitosanase complex structure
58d1ay7b_
not modelled 11.2 31
Fold:Barstar-like
Superfamily:Barstar-related
Family:Barstar-related
59c1p9cA_
not modelled 11.0 30
PDB header:ligand binding protein
Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4;
PDBTitle: nmr solution structure of the c-terminal ubiquitin-2 interacting motif of the proteasome subunit s5a
60d1k47a1
not modelled 10.7 11
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
61d1y2ta_
not modelled 10.7 50
Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Fungal fruit body lectin
62c2lurA_
not modelled 10.5 80
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
63c4dq5B_
not modelled 10.0 42
PDB header:membrane protein
Chain: B: PDB Molecule:membrane protein phi6 p5wt;
PDBTitle: structural investigation of bacteriophage phi6 lysin (wt)
64c1kalA_
not modelled 9.5 55
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: elucidation of the primary and three-dimensional structure2 of the uterotonic polypeptide kalata b1
65c2ofeA_
not modelled 9.4 36
PDB header:sugar binding protein
Chain: A: PDB Molecule:sclerotium rolfsii lectin;
PDBTitle: the crystal structure of sclerotium rolfsii lectin in complex with n-2 acetyl-d-glucosamine
66d1he1a_
not modelled 8.8 21
Fold:Four-helical up-and-down bundle
Superfamily:Bacterial GAP domain
Family:Bacterial GAP domain
67d1ss3a_
not modelled 8.0 43
Fold:Toxic hairpin
Superfamily:Pollen allergen ole e 6
Family:Pollen allergen ole e 6
68c5bq9B_
not modelled 7.7 45
PDB header:unknown function, structural genomics
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein lpg1496 legionella2 pneumophila subsp. pneumophila
69c3e4hA_
not modelled 7.3 55
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
70c4wybJ_
not modelled 6.8 29
PDB header:contractile protein/protein binding
Chain: J: PDB Molecule:bud site selection protein 6;
PDBTitle: structure of the bud6 flank domain in complex with actin
71c3h3mB_
not modelled 6.7 36
PDB header:structural genomics
Chain: B: PDB Molecule:flagellar protein flit;
PDBTitle: crystal structure of flagellar protein flit from bordetella2 bronchiseptica
72c5j9hA_
not modelled 6.6 20
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: crystal structure of glycoprotein c from puumala virus in the post-2 fusion conformation (ph 8.0)
73c2gyaZ_
not modelled 6.6 36
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l32;
PDBTitle: structure of the 50s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
74c3j6vU_
not modelled 6.5 27
PDB header:ribosome
Chain: U: PDB Molecule:28s ribosomal protein s21, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
75c3noyA_
not modelled 6.4 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
76c4l7zC_
not modelled 6.3 16
PDB header:lyase
Chain: C: PDB Molecule:hpch/hpai aldolase;
PDBTitle: crystal structure of chloroflexus aurantiacus malyl-coa lyase
77d1dxha2
not modelled 6.1 42
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
78d1dx5i3
not modelled 5.8 50
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
79d2cx6a1
not modelled 5.8 7
Fold:Barstar-like
Superfamily:Barstar-related
Family:Barstar-related
80c1n1uA_
not modelled 5.7 55
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
81d1n1ua_
not modelled 5.7 55
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
82d2pf1a2
not modelled 5.6 28
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
83c4pnbC_
not modelled 5.6 69
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
84d1x99a_
not modelled 5.5 36
Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Fungal fruit body lectin
85c4pnbA_
not modelled 5.5 69
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
86c4pnbB_
not modelled 5.5 69
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
87c4pnbD_
not modelled 5.5 69
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
88d1pt4a_
not modelled 5.3 55
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
89c1wqbA_
not modelled 5.3 44
PDB header:toxin
Chain: A: PDB Molecule:aptotoxin vii;
PDBTitle: three-dimensional solution strucutre of aptotoxin vii, from2 the venom of a trap-door spider
90c4wybP_
not modelled 5.3 35
PDB header:contractile protein/protein binding
Chain: P: PDB Molecule:bud site selection protein 6;
PDBTitle: structure of the bud6 flank domain in complex with actin
91d1nb1a_
not modelled 5.2 55
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1

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