Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1885c_(-)_2134280_2134879
DateFri Aug 2 13:30:50 BST 2019
Unique Job IDf7a0215a1d6e7cc1
SequenceLLTRPREIYL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.099 Y:51.230 Z:52.291
Model (left) based on template d2fp1a1
Top template information
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Secreted chorismate mutase-like
Confidence and coverage
Confidence:100.0% Coverage: 83%
165 residues ( 83% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2fp1a1
100.0 100
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Secreted chorismate mutase-like
2c5ts9H_
100.0 25
PDB header:isomerase
Chain: H: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of chorismate mutase from burkholderia phymatum
3c4oj7E_
100.0 30
PDB header:isomerase
Chain: E: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of chorismate mutase from burkholderia thailandensis
4c2gbbA_
100.0 24
PDB header:isomerase
Chain: A: PDB Molecule:putative chorismate mutase;
PDBTitle: crystal structure of secreted chorismate mutase from yersinia pestis
5d1ecma_
99.8 25
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
6c3rmiA_
99.7 23
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase protein;
PDBTitle: crystal structure of chorismate mutase from bartonella henselae str.2 houston-1 in complex with malate
7d2gtvx1
99.7 21
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:monomeric chorismate mutase
8c5go2D_
99.7 14
PDB header:isomerase
Chain: D: PDB Molecule:protein aroa(g);
PDBTitle: crystal structure of chorismate mutase like domain of bifunctional2 dahp synthase of bacillus subtilis in complex with citrate
9c6al9A_
99.7 23
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of chorismate mutase from helicobacter pylori in2 complex with prephenate
10d2d8da1
99.6 19
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
11d1ybza1
99.5 25
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
12d2h9da1
99.4 21
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
13c3nvtA_
99.4 17
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e
14c2qbvA_
99.2 13
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of intracellular chorismate mutase from2 mycobacterium tuberculosis
15c5hubA_
99.1 12
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: high-resolution structure of chorismate mutase from corynebacterium2 glutamicum
16c5w6yB_
97.5 17
PDB header:biosynthetic protein,isomerase
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: physcomitrella patens chorismate mutase
17d5csma_
97.5 24
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Allosteric chorismate mutase
18c4ppuA_
97.3 16
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase 1, chloroplastic;
PDBTitle: crystal structure of atcm1 with tyrosine bound in allosteric site
19c6h3pB_
97.2 16
PDB header:plant protein
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of the cytoplasmic chorismate mutase from zea mays
20c6fpgG_
96.5 25
PDB header:cell invasion
Chain: G: PDB Molecule:chromosome 16, whole genome shotgun sequence;
PDBTitle: structure of the ustilago maydis chorismate mutase 1 in complex with a2 zea mays kiwellin
21d1dwka1
not modelled 69.9 25
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Cyanase N-terminal domain
22c2iv1J_
not modelled 51.2 25
PDB header:lyase
Chain: J: PDB Molecule:cyanate hydratase;
PDBTitle: site directed mutagenesis of key residues involved in the catalytic2 mechanism of cyanase
23c5kpeA_
not modelled 49.7 29
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664
24d1gpja3
not modelled 31.9 14
Fold:Ferredoxin-like
Superfamily:Glutamyl tRNA-reductase catalytic, N-terminal domain
Family:Glutamyl tRNA-reductase catalytic, N-terminal domain
25d1myla_
not modelled 28.8 6
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
26c4l8tA_
not modelled 28.8 10
PDB header:protein transport
Chain: A: PDB Molecule:unconventional myosin-vc;
PDBTitle: structure of the cargo binding domain from human myosin vc
27c3n1bA_
not modelled 27.7 10
PDB header:transport protein
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 54;
PDBTitle: c-terminal domain of vps54 subunit of the garp complex
28c2ev2B_
not modelled 27.3 18
PDB header:lyase
Chain: B: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: structure of rv1264n, the regulatory domain of the mycobacterial2 adenylyl cylcase rv1264, at ph 8.5
29d1icha_
not modelled 27.1 10
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
30c1ichA_
not modelled 27.1 10
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor-1;
PDBTitle: solution structure of the tumor necrosis factor receptor-12 death domain
31c5lewA_
not modelled 26.7 14
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit alpha;
PDBTitle: dna polymerase
32d1b28a_
not modelled 25.7 6
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
33c1y66D_
not modelled 25.3 17
PDB header:de novo protein
Chain: D: PDB Molecule:engrailed homeodomain;
PDBTitle: dioxane contributes to the altered conformation and2 oligomerization state of a designed engrailed homeodomain3 variant
34c6noyB_
not modelled 23.7 30
PDB header:structural protein
Chain: B: PDB Molecule:maintenance of carboxysome positioning b protein, mcsb;
PDBTitle: structure of cyanothece mcdb
35c4j5mA_
not modelled 23.6 13
PDB header:protein transport
Chain: A: PDB Molecule:unconventional myosin-vb;
PDBTitle: structure of the cargo binding domain from human myosin vb
36d1mylb_
not modelled 21.5 6
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
37d2ecca1
not modelled 19.7 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
38c2g8yB_
not modelled 19.7 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:malate/l-lactate dehydrogenases;
PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli.
39d2p7vb1
not modelled 17.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
40c4p9gA_
not modelled 17.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4'-dihydroxyacetophenone dioxygenase;
PDBTitle: structure of the 2,4'-dihydroxyacetophenone dioxygenase from2 alcaligenes sp.
41c4jrbA_
not modelled 17.3 16
PDB header:lipid binding protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of cockroach allergen bla g 1 tandem repeat as a egfp fusion
42c2wtgA_
not modelled 17.0 11
PDB header:oxygen transport
Chain: A: PDB Molecule:globin-like protein;
PDBTitle: high resolution 3d structure of c.elegans globin-like2 protein glb-1
43c4clvB_
not modelled 16.7 10
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
44c2knaA_
not modelled 16.3 8
PDB header:apoptosis
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4;
PDBTitle: solution structure of uba domain of xiap
45d1ku3a_
not modelled 16.0 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
46d2vo9a1
not modelled 15.9 3
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:VanY-like
47c1kcfB_
not modelled 15.4 7
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
48c2k23A_
not modelled 15.0 12
PDB header:transport protein
Chain: A: PDB Molecule:lipocalin 2;
PDBTitle: solution structure analysis of the rlcn2
49c5wujA_
not modelled 14.7 28
PDB header:motor protein
Chain: A: PDB Molecule:flagellar m-ring protein;
PDBTitle: crystal structure of flif-flig complex from h. pylori
50c2hnhA_
not modelled 13.7 15
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii alpha subunit;
PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii
51d1kcfa2
not modelled 13.0 8
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Mitochondrial resolvase ydc2 catalytic domain
52c4xp8A_
not modelled 13.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:etga protein;
PDBTitle: structure of etga d60n mutant
53c2y8pA_
not modelled 12.9 17
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
54d1cg5b_
not modelled 12.8 14
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
55c6b2zd_
not modelled 12.7 24
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
56c2vo9C_
not modelled 12.2 3
PDB header:hydrolase
Chain: C: PDB Molecule:l-alanyl-d-glutamate peptidase;
PDBTitle: crystal structure of the enzymatically active domain of the listeria2 monocytogenes bacteriophage 500 endolysin ply500
57c1dlcA_
not modelled 12.0 15
PDB header:toxin
Chain: A: PDB Molecule:delta-endotoxin cryiiia;
PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution
58c5n07A_
not modelled 11.8 8
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor nsrr;
PDBTitle: structure of the [4fe-4s] form of the no response regulator nsrr
59c5l7sA_
not modelled 11.3 12
PDB header:signaling protein
Chain: A: PDB Molecule:secreted rxlr effector peptide protein;
PDBTitle: crystal structure of rxlr effector pexrd54 from phytophthora infestans
60c6bmcA_
not modelled 11.2 17
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: the structure of a dimeric type ii dah7ps associated with pyocyanin2 biosynthesis in pseudomonas aeruginosa
61d1wi3a_
not modelled 11.2 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
62c5fwlE_
not modelled 10.7 16
PDB header:chaperone
Chain: E: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: atomic cryoem structure of hsp90-cdc37-cdk4 complex
63d1gbsa_
not modelled 10.6 6
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:G-type lysozyme
64d1jhfa1
not modelled 10.5 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
65d1bazb_
not modelled 10.4 6
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
66d2ezha_
not modelled 10.3 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
67d2d5xa1
not modelled 10.2 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
68d1ylfa1
not modelled 9.9 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
69c6hsdB_
not modelled 9.9 21
PDB header:transcription
Chain: B: PDB Molecule:rrf2 family transcriptional regulator;
PDBTitle: crystal structure of the oxidized form of the transcription regulator2 rsrr
70d1ji6a3
not modelled 9.9 16
Fold:Toxins' membrane translocation domains
Superfamily:delta-Endotoxin (insectocide), N-terminal domain
Family:delta-Endotoxin (insectocide), N-terminal domain
71d1mbaa_
not modelled 9.7 8
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
72c3pt8B_
not modelled 9.6 13
PDB header:oxygen transport
Chain: B: PDB Molecule:hemoglobin iii;
PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0
73c3gxkB_
not modelled 9.6 23
PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod (gadus2 morhua l.) in complex with nag oligomers sheds new light on substrate3 binding and the catalytic mechanism. native structure to 1.9
74c3mlgB_
not modelled 9.5 9
PDB header:de novo protein
Chain: B: PDB Molecule:2x chimera of helicobacter pylori protein hp0242;
PDBTitle: 2ouf-2x, a designed knotted protein
75d1xd7a_
not modelled 9.4 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
76c2wy4A_
not modelled 9.3 12
PDB header:oxygen transport
Chain: A: PDB Molecule:single domain haemoglobin;
PDBTitle: structure of bacterial globin from campylobacter jejuni at2 1.35 a resolution
77c2l0gA_
not modelled 9.2 27
PDB header:protein binding
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution nmr structure of ubiquitin-binding motif (ubm2) of human2 polymerase iota
78d1wh5a_
not modelled 9.2 0
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
79c2eq9C_
not modelled 9.2 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb
80c2khuA_
not modelled 9.0 27
PDB header:transferase/protein binding
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, dna
PDBTitle: solution structure of the ubiquitin-binding motif of human2 polymerase iota
81c2dkzA_
not modelled 8.8 9
PDB header:signaling protein
Chain: A: PDB Molecule:hypothetical protein loc64762;
PDBTitle: solution structure of the sam_pnt-domain of the2 hypothetical protein loc64762
82d1fvpa_
not modelled 8.8 13
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
83c2k29A_
not modelled 8.8 14
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
84d1sr9a1
not modelled 8.8 27
Fold:RuvA C-terminal domain-like
Superfamily:post-HMGL domain-like
Family:DmpG/LeuA communication domain-like
85d1it2a_
not modelled 8.7 8
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
86c2gf5A_
not modelled 8.7 16
PDB header:apoptosis
Chain: A: PDB Molecule:fadd protein;
PDBTitle: structure of intact fadd (mort1)
87c4zvdA_
not modelled 8.7 10
PDB header:signaling protein
Chain: A: PDB Molecule:diguanylate cyclase dosc;
PDBTitle: crystal structure of mid domain of the e. coli dosc - form ii
88c3d1lB_
not modelled 8.6 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadp oxidoreductase bf3122;
PDBTitle: crystal structure of putative nadp oxidoreductase bf3122 from2 bacteroides fragilis
89c3s1jC_
not modelled 8.6 14
PDB header:oxygen transport, oxygen storage
Chain: C: PDB Molecule:hemoglobin-like flavoprotein;
PDBTitle: crystal structure of acetate-bound hell's gate globin i
90d1yt3a2
not modelled 8.6 5
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
91c4u8uW_
not modelled 8.5 13
PDB header:oxygen storage/transport
Chain: W: PDB Molecule:globin d chain;
PDBTitle: the crystallographic structure of the giant hemoglobin from2 glossoscolex paulistus at 3.2 a resolution.
92c2eq7C_
not modelled 8.4 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
93c3fdqB_
not modelled 8.3 17
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:motility gene repressor mogr;
PDBTitle: recognition of at-rich dna binding sites by the mogr2 repressor
94d2qfka1
not modelled 8.3 8
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
95c4q2uM_
not modelled 8.2 6
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
96c2yqfA_
not modelled 8.2 13
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-1;
PDBTitle: solution structure of the death domain of ankyrin-1
97c2zs0A_
not modelled 8.2 13
PDB header:oxygen storage, oxygen transport
Chain: A: PDB Molecule:extracellular giant hemoglobin major globin subunit a1;
PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin
98d1u9pa1
not modelled 8.2 6
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
99c1x3kA_
not modelled 8.1 5
PDB header:oxygen storage/transport
Chain: A: PDB Molecule:hemoglobin component v;
PDBTitle: crystal structure of a hemoglobin component (ta-v) from2 tokunagayusurika akamusi

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below