Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1888A_(-)_2138451_2138624
DateFri Aug 2 13:30:50 BST 2019
Unique Job IDc1eb0b7906589fbc
SequenceVVPVDLRRDW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.878 Y:26.921 Z:33.118
Model (left) based on template d2uyoa1
Top template information
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:ML2640-like
Confidence and coverage
Confidence: 99.7% Coverage:100%
57 residues (100% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2uyoa1



99.7 63
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:ML2640-like
2d1rjda_



99.4 20
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Leucine carboxy methyltransferase Ppm1
3c3ieiD_



99.2 24
PDB header:transferase
Chain: D: PDB Molecule:leucine carboxyl methyltransferase 1;
PDBTitle: crystal structure of human leucine carboxylmethyltransferase-1 in2 complex with s-adenosyl homocysteine
4c3mntA_



99.2 21
PDB header:transferase
Chain: A: PDB Molecule:leucine carboxyl methyltransferase 1;
PDBTitle: crystal structure of human leucine carboxyl methyltransferase 1
5c2zwaA_



97.9 27
PDB header:transferase
Chain: A: PDB Molecule:leucine carboxyl methyltransferase 2;
PDBTitle: crystal structure of trna wybutosine synthesizing enzyme2 tyw4
6c2qe6B_



97.8 32
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized protein tfu_2867;
PDBTitle: crystal structure of a putative methyltransferase (tfu_2867) from2 thermobifida fusca yx at 1.95 a resolution
7c3giwA_



92.9 16
PDB header:unknown function
Chain: A: PDB Molecule:protein of unknown function duf574;
PDBTitle: crystal structure of a duf574 family protein (sav_2177) from2 streptomyces avermitilis ma-4680 at 1.45 a resolution
8c6e7kB_



37.3 10
PDB header:hydrolase
Chain: B: PDB Molecule:lipoprotein lipase;
PDBTitle: structure of the lipoprotein lipase gpihbp1 complex that mediates2 plasma triglyceride hydrolysis
9c1hplB_



33.6 14
PDB header:hydrolase(carboxylic esterase)
Chain: B: PDB Molecule:lipase;
PDBTitle: horse pancreatic lipase. the crystal structure at 2.3 angstroms2 resolution
10d1rp1a2



33.3 14
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
11c2pvsB_



31.4 14
PDB header:hydrolase
Chain: B: PDB Molecule:pancreatic lipase-related protein 2;
PDBTitle: structure of human pancreatic lipase related protein 22 mutant n336q
12d1hpla2



31.3 14
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
13d1etha2



30.2 14
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
14d1af7a2



29.5 17
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Chemotaxis receptor methyltransferase CheR, C-terminal domain
15c2pplA_



28.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:pancreatic lipase-related protein 1;
PDBTitle: human pancreatic lipase-related protein 1
16c1gplA_



28.3 14
PDB header:serine esterase
Chain: A: PDB Molecule:rp2 lipase;
PDBTitle: rp2 lipase
17d1gpla2



27.9 14
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
18d1bu8a2



27.5 10
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
19d1co6a_



27.4 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
20d1lpbb2



26.1 14
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
21c5xlxD_



not modelled 25.0 17
PDB header:transferase
Chain: D: PDB Molecule:chemotaxis protein methyltransferase 1;
PDBTitle: crystal structure of the c-terminal domain of cher1 containing sah
22c5vyeA_



not modelled 23.7 14
PDB header:lyase
Chain: A: PDB Molecule:l-threonine aldolase;
PDBTitle: crystal structure of l-threonine aldolase from pseudomonas putida
23c5ftwA_



not modelled 23.2 7
PDB header:transferase
Chain: A: PDB Molecule:chemotaxis protein methyltransferase;
PDBTitle: crystal structure of glutamate o-methyltransferase in2 complex with s- adenosyl-l-homocysteine (sah) from3 bacillus subtilis
24c5xlyA_



not modelled 23.1 17
PDB header:transferase
Chain: A: PDB Molecule:chemotaxis protein methyltransferase 1;
PDBTitle: crystal structure of cher1 in complex with c-di-gmp-bound mapz
25c1rp1A_



not modelled 22.2 10
PDB header:hydrolase
Chain: A: PDB Molecule:pancreatic lipase related protein 1;
PDBTitle: dog pancreatic lipase related protein 1
26c1af7A_



not modelled 19.4 17
PDB header:methyltransferase
Chain: A: PDB Molecule:chemotaxis receptor methyltransferase cher;
PDBTitle: cher from salmonella typhimurium
27c3ndhA_



not modelled 18.2 29
PDB header:hydrolase/dna
Chain: A: PDB Molecule:restriction endonuclease thai;
PDBTitle: restriction endonuclease in complex with substrate dna
28c2l9dA_



not modelled 17.3 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the protein yp_546394.1, the first structural2 representative of the pfam family pf12112
29c5w87B_



not modelled 16.6 17
PDB header:transferase/ligase
Chain: B: PDB Molecule:probable e3 ubiquitin-protein ligase herc6;
PDBTitle: crystal structure of the c-terminal lobe of the human herc6 hect2 domain
30c4uy5A_



not modelled 12.8 13
PDB header:transferase
Chain: A: PDB Molecule:histidine-specific methyltransferase egtd;
PDBTitle: crystal structure of histidine-specific methyltransferase egtd from2 mycobacterium smegmatis
31d2p3pa1



not modelled 10.7 19
Fold:PG1388-like
Superfamily:PG1388-like
Family:PG1388-like
32d1x9na1



not modelled 10.3 19
Fold:ATP-dependent DNA ligase DNA-binding domain
Superfamily:ATP-dependent DNA ligase DNA-binding domain
Family:ATP-dependent DNA ligase DNA-binding domain
33d3e46a1



not modelled 10.0 50
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
34c3ggdA_



not modelled 10.0 9
PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase (yp_325210.1)2 from anabaena variabilis atcc 29413 at 2.11 a resolution
35c4rsxA_



not modelled 9.9 23
PDB header:signaling protein
Chain: A: PDB Molecule:type iii effector hopa1;
PDBTitle: the structure of the effector protein from pseudomonas syringae pv.2 tomato strain dc3000
36d1m6ia3



not modelled 9.7 53
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
37c5dplB_



not modelled 9.6 20
PDB header:transferase
Chain: B: PDB Molecule:protein lysine methyltransferase 2;
PDBTitle: the structure of pkmt2 from rickettsia typhi in complex with adohcy
38c5lp8A_



not modelled 9.5 18
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase huwe1;
PDBTitle: crystal structure of an asymmetric dimer of the ubiquitin ligase huwe1
39d2hkja1



not modelled 8.8 25
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Topoisomerase VI-B subunit middle domain
40c1avyA_



not modelled 8.5 38
PDB header:coiled coil
Chain: A: PDB Molecule:fibritin;
PDBTitle: fibritin deletion mutant m (bacteriophage t4)
41c3g1nA_



not modelled 8.1 18
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase huwe1;
PDBTitle: catalytic domain of the human e3 ubiquitin-protein ligase2 huwe1
42c3cqbB_



not modelled 7.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:probable protease htpx homolog;
PDBTitle: crystal structure of heat shock protein htpx domain from vibrio2 parahaemolyticus rimd 2210633
43c1xduA_



not modelled 7.1 19
PDB header:transferase
Chain: A: PDB Molecule:protein rdmb;
PDBTitle: crystal structure of aclacinomycin-10-hydroxylase (rdmb) in complex2 with sinefungin (sfg)
44d1kzyc2



not modelled 7.0 21
Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
45c3cggB_



not modelled 7.0 23
PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of tehb-like sam-dependent methyltransferase2 (np_600671.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.00 a resolution
46c3tl8K_



not modelled 6.9 24
PDB header:transferase/ligase
Chain: K: PDB Molecule:effector protein hopab2;
PDBTitle: the avrptob-bak1 complex reveals two structurally similar2 kinaseinteracting domains in a single type iii effector
47c5wujB_



not modelled 6.9 25
PDB header:motor protein
Chain: B: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: crystal structure of flif-flig complex from h. pylori
48d2g7ja1



not modelled 6.7 33
Fold:Secretion chaperone-like
Superfamily:YgaC/TfoX-N like
Family:YgaC-like
49c6mroA_



not modelled 6.6 10
PDB header:transferase
Chain: A: PDB Molecule:methyl transferase from methanosarcina acetivorans;
PDBTitle: crystal structure of methyl transferase from methanosarcina2 acetivorans at 1.6 angstroms resolution, northeast structural3 genomics consortium (nesg) target mvr53.
50c1fpqA_



not modelled 6.3 13
PDB header:transferase
Chain: A: PDB Molecule:isoliquiritigenin 2'-o-methyltransferase;
PDBTitle: crystal structure analysis of selenomethionine substituted chalcone o-2 methyltransferase
51c3btzA_



not modelled 6.3 19
PDB header:oxidoreductase/dna
Chain: A: PDB Molecule:alpha-ketoglutarate-dependent dioxygenase alkb homolog 2;
PDBTitle: crystal structure of human abh2 cross-linked to dsdna
52d1omha_



not modelled 6.2 31
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Relaxase domain
53c1dmlF_



not modelled 6.2 50
PDB header:dna binding protein/transferase
Chain: F: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
54c1dmlB_



not modelled 6.2 50
PDB header:dna binding protein/transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
55c1dmlD_



not modelled 6.2 50
PDB header:dna binding protein/transferase
Chain: D: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
56c1dmlH_



not modelled 6.2 50
PDB header:dna binding protein/transferase
Chain: H: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
57d1k82a1



not modelled 6.1 25
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
58c3a9fA_



not modelled 6.0 13
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the c-terminal domain of cytochrome cz from2 chlorobium tepidum
59c2k2pA_



not modelled 5.9 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1203;
PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
60c5do0A_



not modelled 5.8 8
PDB header:transferase
Chain: A: PDB Molecule:protein lysine methyltransferase 1;
PDBTitle: the structure of pkmt1 from rickettsia prowazekii
61c6j1xB_



not modelled 5.8 23
PDB header:ligase
Chain: B: PDB Molecule:nedd4-like e3 ubiquitin-protein ligase wwp1;
PDBTitle: wwp1 close conformation
62d1ufoa_



not modelled 5.7 18
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Hypothetical protein TT1662
63c2cosA_



not modelled 5.7 31
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine protein kinase lats2;
PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2)
64c1jzdA_



not modelled 5.6 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: dsbc-dsbdalpha complex
65c2lf6A_



not modelled 5.5 29
PDB header:signaling protein
Chain: A: PDB Molecule:effector protein hopab1;
PDBTitle: solution nmr structure of hopabpph1448_220_320 from pseudomonas2 syringae pv. phaseolicola str. 1448a, midwest center for structural3 genomics target apc40132.4 and northeast structural genomics4 consortium target pst3a
66c4htoA_



not modelled 5.4 24
PDB header:ligase, dna binding protein
Chain: A: PDB Molecule:dna ligase 4;
PDBTitle: crystal structure of the dbd domain of human dna ligase iv apo form
67c6cgaB_



not modelled 5.2 25
PDB header:hydrolase
Chain: B: PDB Molecule:polycomb protein asx;
PDBTitle: structure of the pr-dub complex
68c3i53A_



not modelled 5.2 10
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of an o-methyltransferase (ncsb1) from2 neocarzinostatin biosynthesis in complex with s-adenosyl-l-3 homocysteine (sah)
69c3g2qA_



not modelled 5.2 15
PDB header:transferase
Chain: A: PDB Molecule:pcza361.24;
PDBTitle: crystal structure of the glycopeptide n-methyltransferase mtfa2 complexed with sinefungin
70c3u0vA_



not modelled 5.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:lysophospholipase-like protein 1;
PDBTitle: crystal structure analysis of human lyplal1
71c3p0sA_



not modelled 5.1 22
PDB header:virus
Chain: A: PDB Molecule:capsid protein vp;
PDBTitle: crystal structure of bombyx mori densovirus 1 capsid

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