Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1888c_(-)_2137526_2138086
DateFri Aug 2 13:30:50 BST 2019
Unique Job ID79ebce957a6c4272
SequenceMQPDAYPVRV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.220 Y:20.218 Z:23.751
Model (left) based on template c2pyyB_
Top template information
PDB header:transport protein
Chain: B: PDB Molecule:ionotropic glutamate receptor bacterial homologue;
PDBTitle: crystal structure of the glur0 ligand-binding core from nostoc2 punctiforme in complex with (l)-glutamate
Confidence and coverage
Confidence: 24.3% Coverage: 11%
20 residues ( 11% of your sequence) have been modelled with 24.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2pyyB_
24.3 35
PDB header:transport protein
Chain: B: PDB Molecule:ionotropic glutamate receptor bacterial homologue;
PDBTitle: crystal structure of the glur0 ligand-binding core from nostoc2 punctiforme in complex with (l)-glutamate
2c5bwjC_
23.8 18
PDB header:signaling protein
Chain: C: PDB Molecule:sensory transduction histidine kinase, putative;
PDBTitle: structural characterization and modeling of the borrelia burgdorferi2 hybrid histidine kinase hk1 periplasmic sensor
3c6mctL_
15.7 27
PDB header:de novo protein
Chain: L: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
4c6mctD_
15.7 27
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
5c6mq2D_
15.7 27
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
6c6mctF_
15.7 27
PDB header:de novo protein
Chain: F: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
7c6mctH_
15.7 27
PDB header:de novo protein
Chain: H: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
8c6mctE_
15.7 27
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
9c6mctM_
15.7 27
PDB header:de novo protein
Chain: M: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
10c6mctI_
15.7 27
PDB header:de novo protein
Chain: I: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
11c6mpwA_
15.7 27
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
12c6mctO_
15.7 27
PDB header:de novo protein
Chain: O: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
13c6mctC_
15.7 27
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
14c6mctN_
15.7 27
PDB header:de novo protein
Chain: N: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
15c6mctB_
15.7 27
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
16c6mctK_
15.7 27
PDB header:de novo protein
Chain: K: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
17c6mctA_
15.7 27
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
18c6mctJ_
15.7 27
PDB header:de novo protein
Chain: J: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
19c6mpwD_
15.1 27
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
20c6mq2B_
15.1 27
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
21c6mpwB_
not modelled 15.1 27
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
22c6mpwE_
not modelled 15.1 27
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
23c6mq2A_
not modelled 15.1 27
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
24c6mq2E_
not modelled 15.1 27
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
25c6mpwC_
not modelled 15.1 27
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
26c6mq2C_
not modelled 15.1 27
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
27c6mctG_
not modelled 13.5 29
PDB header:de novo protein
Chain: G: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
28c2q89A_
not modelled 7.8 17
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter amino acid-binding protein;
PDBTitle: crystal structure of ehub in complex with hydroxyectoine
29c2q8iB_
not modelled 7.7 33
PDB header:transferase
Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of
PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol
30d1gph11
not modelled 7.6 56
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
31c5ch6B_
not modelled 7.5 13
PDB header:transcription
Chain: B: PDB Molecule:frigida;
PDBTitle: crystal structure of frigida flowering-time regulator
32d2p06a1
not modelled 7.3 60
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:AF0060-like
33c2p06A_
not modelled 7.3 60
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af_0060;
PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304
34d1ecfa1
not modelled 6.8 27
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
35d3bz6a1
not modelled 6.5 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PSPTO2686-like
36c6gpcB_
not modelled 6.2 24
PDB header:transport protein
Chain: B: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding
PDBTitle: crystal structure of the arginine-bound form of domain 1 from tmargbp
37c1ecjB_
not modelled 6.0 27
PDB header:transferase
Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate
PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer
38c2mg3A_
not modelled 5.9 38
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the membrane2 proximal external region of hiv-1 gp41 in the presence of3 dodecylphosphocholine micelles
39c2mg2A_
not modelled 5.9 38
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane protein gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the membrane2 proximal external region of hiv-1 gp41 in the presence of3 hexafluoroisopropanol
40d2hrkb1
not modelled 5.9 23
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Arc1p N-terminal domain-like
41c3delC_
not modelled 5.6 29
PDB header:protein binding, transport protein
Chain: C: PDB Molecule:arginine binding protein;
PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis
42c2mpeA_
not modelled 5.6 24
PDB header:unknown function
Chain: A: PDB Molecule:bpsl1050;
PDBTitle: solution nmr structure for b. pseudomallei bpsl1050
43d1iwga5
not modelled 5.5 21
Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
44c3w0dA_
not modelled 5.4 19
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:elastase inhibitor afuei;
PDBTitle: structure of elastase inhibitor afuei (cyrstal form i)
45c2zt9H_
not modelled 5.3 29
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
46c4ogqH_
not modelled 5.3 29
PDB header:electron transport
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
47c4h44H_
not modelled 5.3 29
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
48d1o82a_
not modelled 5.2 28
Fold:Saposin-like
Superfamily:Bacteriocin AS-48
Family:Bacteriocin AS-48

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below