Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1890c_(-)_2139083_2139694
DateFri Aug 2 13:30:50 BST 2019
Unique Job ID9b30c07fed4cdf92
SequenceVAHKTRREGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.620 Y:37.507 Z:51.091
Model (left) based on template d1y0ga_
Top template information
Fold:Streptavidin-like
Superfamily:YceI-like
Family:YceI-like
Confidence and coverage
Confidence:100.0% Coverage: 79%
160 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1y0ga_



100.0 14
Fold:Streptavidin-like
Superfamily:YceI-like
Family:YceI-like
2d1wuba_



100.0 23
Fold:Streptavidin-like
Superfamily:YceI-like
Family:YceI-like
3c5ixhB_



100.0 25
PDB header:unknown function
Chain: B: PDB Molecule:ycei-like domain protein;
PDBTitle: crystal structure of burkholderia cenocepacia bcna
4c5ixgD_



100.0 16
PDB header:unknown function
Chain: D: PDB Molecule:ycei;
PDBTitle: crystal structure of burkholderia cenocepacia bcnb
5c2fgsA_



100.0 16
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of campylobacter jejuni ycei protein,2 structural genomics
6c3hpeB_



100.0 11
PDB header:transport protein
Chain: B: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: crystal structure of ycei (hp1286) from helicobacter pylori
7c2x34A_



100.0 14
PDB header:carbohydrate-binding protein
Chain: A: PDB Molecule:cellulose-binding protein, x158;
PDBTitle: structure of a polyisoprenoid binding domain from saccharophagus2 degradans implicated in plant cell wall breakdown
8c3q34A_



100.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ycei-like family protein;
PDBTitle: the crystal structure of ycei-like family protein from pseudomonas2 syringae
9c5vtgB_



58.7 14
PDB header:chaperone
Chain: B: PDB Molecule:translocation and assembly module subunit tamb;
PDBTitle: the structure of tamb963-1138 from escherichia coli reveals a novel2 hydrophobic beta-taco fold
10c5e6wA_



53.3 10
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: re-refinement of the crystal structure of the plexin-semaphorin-2 integrin domain/hybrid domain/i-egf1 segment from the human integrin3 b2 subunit
11c4r80A_



38.8 16
PDB header:de novo protein
Chain: A: PDB Molecule:or486;
PDBTitle: crystal structure of a de novo designed beta sheet protein, cystatin2 fold, northeast structural genomics consortium (nesg) target or486
12d1n4ka2



29.2 19
Fold:beta-Trefoil
Superfamily:MIR domain
Family:MIR domain
13c6fzvA_



20.5 13
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of the metalloproteinase enhancer pcpe-1 bound to2 the procollagen c propeptide trimer (short)
14c5k31E_



19.5 13
PDB header:structural protein
Chain: E: PDB Molecule:collagen alpha-1(i) chain;
PDBTitle: crystal structure of human fibrillar procollagen type i c-propeptide2 homo-trimer
15d2gqfa2



17.4 15
Fold:HI0933 insert domain-like
Superfamily:HI0933 insert domain-like
Family:HI0933 insert domain-like
16d1pbya4



13.0 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5
17c4aejA_



12.7 14
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of human fibrillar procollagen type iii c-2 propeptide trimer
18c2vxeA_



10.8 14
PDB header:transcription
Chain: A: PDB Molecule:cg10686-pa;
PDBTitle: solution structure of the lsm domain of drosophila2 melanogaster tral (trailer hitch)
19c1zeqX_



9.8 19
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
20c4qa8A_



8.8 15
PDB header:lipid transport
Chain: A: PDB Molecule:putative lipoprotein lprf;
PDBTitle: crystal structure of lprf from mycobacterium bovis
21d2vxfa1



not modelled 8.8 16
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:LSM14 N-terminal domain-like
22c3uc0B_



not modelled 7.6 20
PDB header:viral protein/immune system
Chain: B: PDB Molecule:envelope protein;
PDBTitle: crystal structure of domain i of the envelope glycoprotein ectodomain2 from dengue virus serotype 4 in complex with the fab fragment of the3 chimpanzee monoclonal antibody 5h2
23c5ulsA_



not modelled 7.5 53
PDB header:chaperone
Chain: A: PDB Molecule:endoplasmin;
PDBTitle: structure of grp94 in the active conformation
24c5tvzA_



not modelled 7.4 12
PDB header:transport protein
Chain: A: PDB Molecule:nucleoporin pom152;
PDBTitle: solution nmr structure of saccharomyces cerevisiae pom152 ig-like2 repeat, residues 718-820
25c1y96C_



not modelled 7.3 38
PDB header:rna binding protein
Chain: C: PDB Molecule:gem-associated protein 6;
PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex
26c5hsbA_



not modelled 7.2 33
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase;
PDBTitle: andes virus endonuclease
27c5tthA_



not modelled 6.7 59
PDB header:chaperone
Chain: A: PDB Molecule:c-terminal spycatcher fusion of wildtype zebrafish tnf
PDBTitle: heterodimeric spycatcher/spytag-fused zebrafish trap1 in atp/adp-2 hybrid state
28c4ipeA_



not modelled 6.6 59
PDB header:chaperone
Chain: A: PDB Molecule:tnf receptor-associated protein 1;
PDBTitle: crystal structure of mitochondrial hsp90 (trap1) with amppnp
29c2l55A_



not modelled 6.4 24
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
30d2icha1



not modelled 6.2 11
Fold:AttH-like
Superfamily:AttH-like
Family:AttH-like
31c3d8mA_



not modelled 6.2 23
PDB header:virus/viral protein
Chain: A: PDB Molecule:baseplate protein, receptor binding protein;
PDBTitle: crystal structure of a chimeric receptor binding protein from2 lactococcal phages subspecies tp901-1 and p2
32d1u7ba2



not modelled 5.9 13
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
33c3da0C_



not modelled 5.6 23
PDB header:viral protein
Chain: C: PDB Molecule:cleaved chimeric receptor binding protein from
PDBTitle: crystal structure of a cleaved form of a chimeric receptor binding2 protein from lactococcal phages subspecies tp901-1 and p2
34d1rwza2



not modelled 5.4 12
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
35c2qazC_



not modelled 5.3 16
PDB header:hydrolase activator
Chain: C: PDB Molecule:sspb protein;
PDBTitle: structure of c. crescentus sspb ortholog
36d1ud9a2



not modelled 5.0 31
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
37d2nysa1



not modelled 5.0 19
Fold:SspB-like
Superfamily:SspB-like
Family:AGR C 3712p-like

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