Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1892_(-)_2140172_2140483
DateFri Aug 2 13:30:51 BST 2019
Unique Job IDc21b6b4d8c687458
SequenceMIMCEGRPTE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:20.299 Y:24.472 Z:22.081
Model (left) based on template c2wvrB_
Top template information
PDB header:replication
Chain: B: PDB Molecule:geminin;
PDBTitle: human cdt1:geminin complex
Confidence and coverage
Confidence: 33.0% Coverage: 18%
19 residues ( 18% of your sequence) have been modelled with 33.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2wvrB_



33.0 21
PDB header:replication
Chain: B: PDB Molecule:geminin;
PDBTitle: human cdt1:geminin complex
2d2h8pc1



16.9 25
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
3c5z58w_



15.8 67
PDB header:splicing
Chain: W: PDB Molecule:
PDBTitle: cryo-em structure of a human activated spliceosome (early bact) at 4.92 angstrom.
4c5oqtC_



13.5 50
PDB header:transport protein
Chain: C: PDB Molecule:uncharacterized protein ynem;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
5c1hk7A_



13.4 58
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein hsp82;
PDBTitle: middle domain of hsp90
6c6g90T_



13.2 50
PDB header:splicing
Chain: T: PDB Molecule:pre-mrna-splicing factor prp9;
PDBTitle: prespliceosome structure provides insight into spliceosome assembly2 and regulation (map a2)
7c1y6zA_



13.2 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:heat shock protein, putative;
PDBTitle: middle domain of plasmodium falciparum putative heat shock protein2 pf14_0417
8c5jygA_



13.1 43
PDB header:structural protein
Chain: A: PDB Molecule:actin-like atpase;
PDBTitle: cryo-em structure of the mamk filament at 6.5 a
9c6f34C_



12.4 50
PDB header:membrane protein
Chain: C: PDB Molecule:mgts;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue bound to arginine.
10c2qw6A_



12.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:aaa atpase, central region;
PDBTitle: crystal structure of the c-terminal domain of an aaa atpase from2 enterococcus faecium do
11d2qw6a1



12.1 33
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
12d1usua_



11.6 50
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Hsp90 middle domain
13c2ww9O_



11.5 50
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l39;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the yeast2 80s ribosome
14c2o1tB_



11.4 33
PDB header:chaperone
Chain: B: PDB Molecule:endoplasmin;
PDBTitle: structure of middle plus c-terminal domains (m+c) of grp94
15d1dxsa_



11.1 62
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
16c4xb6D_



10.7 35
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
17c3pryA_



9.8 33
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein hsp 90-beta;
PDBTitle: crystal structure of the middle domain of human hsp90-beta refined at2 2.3 a resolution
18c2xuvB_



9.7 54
PDB header:unknown function
Chain: B: PDB Molecule:hdeb;
PDBTitle: the structure of hdeb
19d1rg6a_



9.5 26
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
20c2zkr3_



9.3 63
PDB header:ribosomal protein/rna
Chain: 3: PDB Molecule:60s ribosomal protein l39e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
21c2gq0B_



not modelled 8.6 50
PDB header:chaperone, hydrolase
Chain: B: PDB Molecule:chaperone protein htpg;
PDBTitle: crystal structure of the middle domain of htpg, the e. coli hsp90
22c3q6nF_



not modelled 8.5 42
PDB header:chaperone
Chain: F: PDB Molecule:heat shock protein hsp 90-alpha;
PDBTitle: crystal structure of human mc-hsp90 in p21 space group
23c5xfmD_



not modelled 8.5 50
PDB header:hydrolase
Chain: D: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of beta-arabinopyranosidase
24c2la3A_



not modelled 8.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain
25c2cgeD_



not modelled 8.0 58
PDB header:chaperone
Chain: D: PDB Molecule:atp-dependent molecular chaperone hsp82;
PDBTitle: crystal structure of an hsp90-sba1 closed chaperone complex
26c3hjcA_



not modelled 7.9 50
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 83-1;
PDBTitle: crystal structure of the carboxy-terminal domain of hsp90 from2 leishmania major, lmjf33.0312
27c3a24A_



not modelled 6.9 50
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of bt1871 retaining glycosidase
28c2n90A_



not modelled 6.8 67
PDB header:transferase
Chain: A: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
29c2n90B_



not modelled 6.8 67
PDB header:transferase
Chain: B: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
30c3zf7q_



not modelled 6.7 40
PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l15;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
31c3r9jD_



not modelled 6.6 18
PDB header:cell cycle,hydrolase/cell cycle
Chain: D: PDB Molecule:cell division topological specificity factor;
PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex
32c3izso_



not modelled 6.4 40
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein rpl28 (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
33d1xmec1



not modelled 6.3 23
Fold:Single transmembrane helix
Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa
Family:Bacterial ba3 type cytochrome c oxidase subunit IIa
34c3bvdC_



not modelled 6.3 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c oxidase polypeptide 2a;
PDBTitle: structure of surface-engineered cytochrome ba3 oxidase from thermus2 thermophilus under xenon pressure, 100psi 5min
35c6adqP_



not modelled 6.2 23
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
36c2iopD_



not modelled 5.9 50
PDB header:chaperone
Chain: D: PDB Molecule:chaperone protein htpg;
PDBTitle: crystal structure of full-length htpg, the escherichia coli2 hsp90, bound to adp
37c2wfoA_



not modelled 5.7 43
PDB header:viral protein
Chain: A: PDB Molecule:glycoprotein 1;
PDBTitle: crystal structure of machupo virus envelope glycoprotein gp1
38c5tthA_



not modelled 5.6 42
PDB header:chaperone
Chain: A: PDB Molecule:c-terminal spycatcher fusion of wildtype zebrafish tnf
PDBTitle: heterodimeric spycatcher/spytag-fused zebrafish trap1 in atp/adp-2 hybrid state
39c2ariA_



not modelled 5.5 50
PDB header:viral protein
Chain: A: PDB Molecule:envelope polyprotein gp160;
PDBTitle: solution structure of micelle-bound fusion domain of hiv-12 gp41
40c2wseE_



not modelled 5.1 40
PDB header:photosynthesis
Chain: E: PDB Molecule:photosystem i reaction center subunit iv a, chloroplastic;
PDBTitle: improved model of plant photosystem i

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Transmembrane helix prediction 

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