Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1898_(-)_2144947_2145255
DateFri Aug 2 13:30:51 BST 2019
Unique Job ID8f19a866eeaf9ee4
SequenceVSVLVAFSVT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.450 Y:50.061 Z:33.348
Model (left) based on template d1lxja_
Top template information
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
Confidence and coverage
Confidence:100.0% Coverage: 97%
99 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1lxja_



100.0 21
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
2d1lxna_



100.0 23
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
3c2epiA_



100.0 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0045 protein mj1052;
PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2)
4d1yqha1



100.0 34
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
5d1vk8a_



100.0 21
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
6d2iboa1



100.0 22
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
7d1s99a_



96.7 12
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:Putative thiamin/HMP-binding protein YkoF
8c4mp4B_



72.3 11
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase;
PDBTitle: crystal structure of a glutathione transferase family member from2 acinetobacter baumannii, target efi-501785, apo structure
9d1lfpa_



44.1 14
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
10d1kona_



34.5 15
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
11c2kbzA_



33.6 35
PDB header:viral protein
Chain: A: PDB Molecule:15 protein (bacteriophage spp1 complete
PDBTitle: nmr structure of protein gp15 of bacteriophage spp1
12c4yamA_



33.5 11
PDB header:transferase
Chain: A: PDB Molecule:beta-etherase;
PDBTitle: crystal structure of lige-apo form from sphingobium sp. strain syk-6
13d1nyra1



33.1 11
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
14c3nivD_



30.3 4
PDB header:isomerase
Chain: D: PDB Molecule:glutathione s-transferase;
PDBTitle: the crystal structure of glutathione s-transferase from legionella2 pneumophila
15d1k25a1



28.4 17
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
16c2y9jt_



27.3 18
PDB header:protein transport
Chain: T: PDB Molecule:protein prgh;
PDBTitle: three-dimensional model of salmonella's needle complex at subnanometer2 resolution
17c5t9jB_



26.9 14
PDB header:hydrolase
Chain: B: PDB Molecule:flap endonuclease gen homolog 1;
PDBTitle: crystal structure of human gen1 in complex with holliday junction dna2 in the upper interface
18d1pyya1



26.7 13
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
19c5x62A_



24.2 13
PDB header:transferase
Chain: A: PDB Molecule:carnosine n-methyltransferase;
PDBTitle: crystal structure of a carnosine n-methyltransferase bound by adohcy
20c4oxxA_



23.1 15
PDB header:electron transport
Chain: A: PDB Molecule:cindoxin;
PDBTitle: crystal structure of cindoxin, surface entropy reduction mutant
21c4f3qA_



not modelled 22.3 11
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein cbu_1566;
PDBTitle: structure of a yebc family protein (cbu_1566) from coxiella burnetii
22c3bbyA_



not modelled 21.4 18
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized gst-like protein yfcf;
PDBTitle: crystal structure of glutathione s-transferase (np_416804.1) from2 escherichia coli k12 at 1.85 a resolution
23d1nj1a1



not modelled 21.4 19
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
24d1qf6a1



not modelled 21.3 16
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
25c4exqA_



not modelled 21.1 6
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase (upd) from2 burkholderia thailandensis e264
26c5xftA_



not modelled 20.2 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydroascorbate reductase;
PDBTitle: crystal structure of chlamydomonas reinhardtii dehydroascorbate2 reductase
27c2k3dA_



not modelled 19.8 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0334 protein;
PDBTitle: solution nmr structure of the folded 79 residue fragment of2 lin0334 from listeria innocua. northeast structural3 genomics consortium target lkr15
28d1y81a1



not modelled 19.5 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
29c4f03A_



not modelled 19.4 11
PDB header:transferase
Chain: A: PDB Molecule:glutathione transferase;
PDBTitle: crystal structure of the glutathione transferase gte1 from2 phanerochaete chrysosporium
30c2ejaB_



not modelled 18.7 10
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus
31c3ff4A_



not modelled 18.5 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
32d1lt7a_



not modelled 18.2 6
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
33c3ehgA_



not modelled 18.0 12
PDB header:transferase
Chain: A: PDB Molecule:sensor kinase (yocf protein);
PDBTitle: crystal structure of the atp-binding domain of desk in complex with2 atp
34c2pmfA_



not modelled 17.9 21
PDB header:ligase
Chain: A: PDB Molecule:glycyl-trna synthetase;
PDBTitle: the crystal structure of a human glycyl-trna synthetase mutant
35c5w7sA_



not modelled 17.9 16
PDB header:transferase
Chain: A: PDB Molecule:oxac;
PDBTitle: crystal structure of oxac in complex with sinefungin and meleagrin
36c5e6mA_



not modelled 17.4 22
PDB header:ligase/rna
Chain: A: PDB Molecule:glycine--trna ligase;
PDBTitle: crystal structure of human wild type glyrs bound with trnagly
37c4zmmB_



not modelled 17.3 29
PDB header:transferase
Chain: B: PDB Molecule:diguanylate cyclase;
PDBTitle: ggdef domain of dcsbis complexed with c-di-gmp
38c6mspA_



not modelled 17.3 10
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein foldit3;
PDBTitle: de novo designed protein foldit3
39d1z9ha2



not modelled 17.1 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
40d1rp5a2



not modelled 16.3 12
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
41c6q8jA_



not modelled 16.2 14
PDB header:splicing
Chain: A: PDB Molecule:wd40 repeat-containing protein smu1;
PDBTitle: nterminal domain of human smu1 in complex with lsp641
42c4heqB_



not modelled 16.1 16
PDB header:electron transport
Chain: B: PDB Molecule:flavodoxin;
PDBTitle: the crystal structure of flavodoxin from desulfovibrio gigas
43d1edza2



not modelled 15.5 6
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Tetrahydrofolate dehydrogenase/cyclohydrolase
44c4zmuD_



not modelled 14.5 16
PDB header:lyase
Chain: D: PDB Molecule:diguanylate cyclase;
PDBTitle: dcsbis, a diguanylate cyclase from pseudomonas aeruginosa
45d1k25a2



not modelled 14.5 8
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
46c1tolA_



not modelled 14.4 16
PDB header:viral protein
Chain: A: PDB Molecule:protein (fusion protein consisting of minor coat protein,
PDBTitle: fusion of n-terminal domain of the minor coat protein from gene iii in2 phage m13, and c-terminal domain of e. coli protein-tola
47c6j3fB_



not modelled 13.9 13
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase;
PDBTitle: crystal structure of the glutathione s-transferase, csgst63524, of2 ceriporiopsis subvermispora in complex with glutathione
48c5yf1A_



not modelled 13.8 13
PDB header:transferase
Chain: A: PDB Molecule:carnosine n-methyltransferase;
PDBTitle: crystal structure of carnmt1 bound to carnosine and sfg
49c3zxoB_



not modelled 13.7 29
PDB header:transferase
Chain: B: PDB Molecule:redox sensor histidine kinase response regulator devs;
PDBTitle: crystal structure of the mutant atp-binding domain of2 mycobacterium tuberculosis doss
50c5dqsA_



not modelled 13.6 14
PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-gamma;
PDBTitle: complex structure of human elongation factor 1b alpha and gamma gst-2 like domains
51c5y63E_



not modelled 13.6 16
PDB header:oxidoreductase
Chain: E: PDB Molecule:alkyl hydroperoxide reductase, c subunit;
PDBTitle: crystal structure of enterococcus faecalis ahpc
52d1mw7a_



not modelled 13.5 19
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
53c3hr4C_



not modelled 13.3 9
PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
54c6jwkB_



not modelled 13.0 12
PDB header:isomerase
Chain: B: PDB Molecule:probable glutathione s-transferase;
PDBTitle: crystal structure of maleylpyruvate isomerase from pseudomonas2 aeruginosa pao1
55c4kqeA_



not modelled 12.9 21
PDB header:ligase
Chain: A: PDB Molecule:glycine--trna ligase;
PDBTitle: the mutant structure of the human glycyl-trna synthetase e71g
56d2fiua1



not modelled 12.9 22
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Atu0297-like
57d1atia1



not modelled 12.8 19
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
58d1gwca2



not modelled 12.7 19
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
59d2b8ta1



not modelled 12.2 8
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Type II thymidine kinase
60d1b1ca_



not modelled 11.3 11
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
61c1z9hB_



not modelled 10.7 15
PDB header:isomerase
Chain: B: PDB Molecule:membrane-associated prostaglandin e synthase-2;
PDBTitle: microsomal prostaglandin e synthase type-2
62d1pyya2



not modelled 10.6 12
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
63d1a4ia2



not modelled 10.4 13
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Tetrahydrofolate dehydrogenase/cyclohydrolase
64c4jbbA_



not modelled 10.4 13
PDB header:transferase
Chain: A: PDB Molecule:putative glutathione s-transferase;
PDBTitle: crystal structure of glutathione s-transferase a6tby7(target efi-2 507184) from klebsiella pneumoniae mgh 78578, gsh complex
65d1g7oa2



not modelled 10.4 9
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
66d1d1da1



not modelled 10.2 30
Fold:Acyl carrier protein-like
Superfamily:Retrovirus capsid dimerization domain-like
Family:Retrovirus capsid protein C-terminal domain
67c4g6uA_



not modelled 10.2 13
PDB header:toxin
Chain: A: PDB Molecule:ec869 cdia-ct;
PDBTitle: cdia-ct/cdii toxin and immunity complex from escherichia coli
68d1zpda1



not modelled 10.1 15
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
69d1oyja2



not modelled 10.0 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
70c2b8tA_



not modelled 10.0 9
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: crystal structure of thymidine kinase from u.urealyticum in complex2 with thymidine
71c5z5eB_



not modelled 10.0 18
PDB header:ligase
Chain: B: PDB Molecule:neq417;
PDBTitle: crystal structure of the glycyl-trna synthetase (glyrs) in2 nanoarchaeum equitans
72c1oyjC_



not modelled 9.9 13
PDB header:transferase
Chain: C: PDB Molecule:glutathione s-transferase;
PDBTitle: crystal structure solution of rice gst1 (osgstu1) in complex with2 glutathione.
73c3i5aA_



not modelled 9.8 10
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
74d1pvda1



not modelled 9.7 12
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
75c5en7A_



not modelled 9.6 16
PDB header:splicing
Chain: A: PDB Molecule:smu-1;
PDBTitle: crystal structure of the smu1-red complex (native) of caenorhabditis2 elegans.
76c4uw2C_



not modelled 9.5 26
PDB header:immune system
Chain: C: PDB Molecule:csm1;
PDBTitle: crystal structure of csm1 in t.onnurineus
77c6j3gA_



not modelled 9.5 14
PDB header:transferase
Chain: A: PDB Molecule:glutathione s-transferase;
PDBTitle: crystal structure of an apo form of the glutathione s-transferase,2 csgst83044, of ceriporiopsis subvermispora
78c3re3B_



not modelled 9.3 8
PDB header:lyase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis
79c4zquA_



not modelled 9.2 13
PDB header:toxin
Chain: A: PDB Molecule:cdia-ct toxin, conserved domain protein;
PDBTitle: cdia-ct/cdii toxin and immunity complex from yersinia2 pseudotuberculosis
80d2guka1



not modelled 9.2 18
Fold:PG1857-like
Superfamily:PG1857-like
Family:PG1857-like
81d2g4ca1



not modelled 9.1 3
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
82c3m6yA_



not modelled 8.9 21
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase;
PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution.
83c3l6sA_



not modelled 8.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:aspartyl aminopeptidase;
PDBTitle: crystal structure of human aspartyl aminopeptidase (dnpep), in complex2 with aspartic acid hydroxamate
84c3nglA_



not modelled 8.7 10
PDB header:oxidoreductase, hydrolase
Chain: A: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of bifunctional 5,10-methylenetetrahydrofolate2 dehydrogenase / cyclohydrolase from thermoplasma acidophilum
85c3muxB_



not modelled 8.6 19
PDB header:lyase
Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase;
PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a
86d1rrma_



not modelled 8.4 13
Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
87c3csxA_



not modelled 8.4 6
PDB header:metal binding protein,unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structural characterization of a protein in the duf6832 family- crystal structure of cce_0567 from the3 cyanobacterium cyanothece 51142.
88c4kr3A_



not modelled 8.4 22
PDB header:ligase/rna
Chain: A: PDB Molecule:glycine--trna ligase;
PDBTitle: glycyl-trna synthetase mutant e71g in complex with trna-gly
89c3gqeA_



not modelled 8.4 12
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of macro domain of venezuelan equine encephalitis2 virus
90d1ovma1



not modelled 8.4 9
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
91d2fi9a1



not modelled 8.3 17
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
92d1hc7a1



not modelled 8.2 19
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
93c2js5B_



not modelled 8.1 28
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein q60c73_metca. northeast structural2 genomics consortium target mcr1
94d1y0na_



not modelled 8.1 20
Fold:YehU-like
Superfamily:YehU-like
Family:YehU-like
95d1j3ma_



not modelled 8.0 30
Fold:TBP-like
Superfamily:TT1751-like
Family:TT1751-like
96c3a7mA_



not modelled 8.0 11
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:flagellar protein flit;
PDBTitle: structure of flit, the flagellar type iii chaperone for flid
97c3b6nA_



not modelled 8.0 6
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase pv003920 from plasmodium vivax
98c1jpkA_



not modelled 7.9 13
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase
99c5ucmB_



not modelled 7.9 15
PDB header:ligase
Chain: B: PDB Molecule:proline--trna ligase;
PDBTitle: crystal structure of prolyl-trna synthetase from pseudomonas2 aeruginosa

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite