Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1907c_(-)_2153242_2153889
DateFri Aug 2 13:30:52 BST 2019
Unique Job IDd87cf65e4bfc6ac1
SequenceLIGPARRSTT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:17.133 Y:19.270 Z:21.518
Model (left) based on template c2l6pA_
Top template information
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:phac1, phac2 and phad genes;
PDBTitle: nmr solution structure of the protein np_253742.1
Confidence and coverage
Confidence: 60.2% Coverage: 7%
16 residues ( 7% of your sequence) have been modelled with 60.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2l6pA_



60.2 38
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:phac1, phac2 and phad genes;
PDBTitle: nmr solution structure of the protein np_253742.1
2c3luuA_



60.1 38
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with unknown function which belongs to2 pfam duf971 family (afe_2189) from acidithiobacillus ferrooxidans3 atcc 23270 at 1.93 a resolution
3c2fb1A_



53.6 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron
4c2l6nA_



45.9 38
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1;
PDBTitle: nmr solution structure of the protein yp_001092504.1
5c4i62A_



44.6 16
PDB header:transport protein
Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding
PDBTitle: 1.05 angstrom crystal structure of an amino acid abc transporter2 substrate-binding protein abpa from streptococcus pneumoniae canada3 mdr_19a bound to l-arginine
6c2yyhC_



41.8 26
PDB header:hydrolase
Chain: C: PDB Molecule:8-oxo-dgtpase domain;
PDBTitle: crystal structure of nudix family protein from aquifex aeolicus
7d1h9hi_



36.2 43
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
8c3uv1B_



36.1 16
PDB header:allergen
Chain: B: PDB Molecule:der f 7 allergen;
PDBTitle: crystal structure a major allergen from dust mite
9c3i9xA_



33.2 22
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua
10c2fmlB_



29.9 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis
11c2m2qA_



26.9 70
PDB header:unknown function
Chain: A: PDB Molecule:inhibitor cystine knot peptide mch-1;
PDBTitle: solution structure of mch-1: a novel inhibitor cystine knot peptide2 from momordica charantia
12c1hw4A_



26.5 30
PDB header:transferase
Chain: A: PDB Molecule:thymidylate synthase;
PDBTitle: structure of thymidylate synthase suggests advantages of chemotherapy2 with noncompetitive inhibitors
13c3egyX_



25.1 33
PDB header:transferase
Chain: X: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of human thymidyalte synthase a191k with loop 181-2 197 stabilized in the inactive conformation
14d2fmla2



25.0 26
Fold:Nudix
Superfamily:Nudix
Family:BT0354 N-terminal domain-like
15c5t3pB_



24.6 32
PDB header:hydrolase
Chain: B: PDB Molecule:peroxisomal coenzyme a diphosphatase nudt7;
PDBTitle: crystal structure of human peroxisomal coenzyme a diphosphatase nudt7
16c5cw9A_



24.0 37
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed ferredoxin-ferredoxin domain insertion
PDBTitle: crystal structure of de novo designed ferredoxin-ferredoxin domain2 insertion protein
17c6btmB_



23.8 50
PDB header:membrane protein
Chain: B: PDB Molecule:alternative complex iii subunit b;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
18d1hvya_



23.2 30
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
19d1mcvi_



23.1 45
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
20c1mcvI_



23.1 45
PDB header:hydrolase
Chain: I: PDB Molecule:hei-toe i;
PDBTitle: crystal structure analysis of a hybrid squash inhibitor in2 complex with porcine pancreatic elastase
21d2it7a1



not modelled 22.1 45
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
22c2it7A_



not modelled 22.1 45
PDB header:plant protein
Chain: A: PDB Molecule:trypsin inhibitor 2;
PDBTitle: solution structure of the squash trypsin inhibitor eeti-ii
23c2ph5A_



not modelled 22.1 25
PDB header:transferase
Chain: A: PDB Molecule:homospermidine synthase;
PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54
24c6n1nA_



not modelled 22.0 9
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of class d beta-lactamase from sebaldella termitidis2 atcc 33386
25c6f0kB_



not modelled 21.8 25
PDB header:membrane protein
Chain: B: PDB Molecule:fe-s-cluster-containing hydrogenase;
PDBTitle: alternative complex iii
26c3gz6A_



not modelled 21.6 23
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of shewanella oneidensis nrtr complexed with a 27mer2 dna
27c2letA_



not modelled 21.5 45
PDB header:proteinase inhibitor(trypsin)
Chain: A: PDB Molecule:trypsin inhibitor ii;
PDBTitle: an 1h nmr determination of the three dimensional structures of mirror2 image forms of a leu-5 variant of the trypsin inhibitor ecballium3 elaterium (eeti-ii)
28c4v14A_



not modelled 19.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: structure and function analysis of mutt from the2 psychrofile fish pathogen aliivibrio salmonicida and the3 mesophile vibrio cholerae
29c1hw3A_



not modelled 19.3 30
PDB header:transferase
Chain: A: PDB Molecule:thymidylate synthase;
PDBTitle: structure of human thymidylate synthase suggests advantages of2 chemotherapy with noncompetitive inhibitors
30c5o5jF_



not modelled 18.9 19
PDB header:ribosome
Chain: F: PDB Molecule:30s ribosomal protein s6;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
31c3k5jA_



not modelled 18.7 17
PDB header:protein binding
Chain: A: PDB Molecule:suppressor of fused family protein;
PDBTitle: crystal structure of putative sufu (suppressor of fused protein)2 homolog (yp_208451.1) from neisseria gonorrhoeae fa 1090 at 1.40 a3 resolution
32c6jczL_



not modelled 18.4 10
PDB header:isomerase
Chain: L: PDB Molecule:putative ketol-acid reductoisomerase 2;
PDBTitle: cryo-em structure of sulfolobus solfataricus ketol-acid2 reductoisomerase (sso-kari) in complex with mg2+, nadph, and cpd at3 ph7.5
33c2pq1B_



not modelled 17.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:ap4a hydrolase;
PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5
34c4plpB_



not modelled 17.6 38
PDB header:transferase
Chain: B: PDB Molecule:homospermidine synthase;
PDBTitle: crystal structure of the homospermidine synthase (hss) from2 blastochloris viridis in complex with nad
35d2fb1a2



not modelled 17.4 29
Fold:Nudix
Superfamily:Nudix
Family:BT0354 N-terminal domain-like
36c5bonC_



not modelled 17.1 29
PDB header:hydrolase
Chain: C: PDB Molecule:probable 8-oxo-dgtp diphosphatase nudt15;
PDBTitle: crystal structure of human nudt15 (mth2)
37d2c4ba2



not modelled 16.9 53
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
38c3ef5A_



not modelled 16.6 26
PDB header:hydrolase
Chain: A: PDB Molecule:probable pyrophosphohydrolase;
PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp
39c4h5fB_



not modelled 16.5 14
PDB header:transport protein
Chain: B: PDB Molecule:amino acid abc superfamily atp binding cassette
PDBTitle: crystal structure of an amino acid abc transporter substrate-binding2 protein from streptococcus pneumoniae canada mdr_19a bound to l-3 arginine, form 1
40d1irya_



not modelled 16.4 32
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
41d1h9ii_



not modelled 16.2 39
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
42c6g3bA_



not modelled 15.7 47
PDB header:hydrolase
Chain: A: PDB Molecule:type ii site-specific deoxyribonuclease;
PDBTitle: avaii restriction endonuclease in complex with an rna/dna hybrid
43c2m7tA_



not modelled 15.5 53
PDB header:protein binding
Chain: A: PDB Molecule:cystine knot protein 2.5d;
PDBTitle: solution nmr structure of engineered cystine knot protein 2.5d
44c6gpcB_



not modelled 15.1 9
PDB header:transport protein
Chain: B: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding
PDBTitle: crystal structure of the arginine-bound form of domain 1 from tmargbp
45c2aazG_



not modelled 14.7 23
PDB header:transferase
Chain: G: PDB Molecule:thymidylate synthase;
PDBTitle: cryptococcus neoformans thymidylate synthase complexed with substrate2 and an antifolate
46d1nqza_



not modelled 14.2 19
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
47d2iela1



not modelled 14.1 19
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
48c3p14C_



not modelled 14.1 23
PDB header:isomerase
Chain: C: PDB Molecule:l-rhamnose isomerase;
PDBTitle: crystal structure of l-rhamnose isomerase with a novel high thermo-2 stability from bacillus halodurans
49c3exqA_



not modelled 14.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:nudix family hydrolase;
PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis
50d1sjya_



not modelled 13.9 31
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
51c3h95A_



not modelled 13.9 26
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6;
PDBTitle: crystal structure of the nudix domain of nudt6
52c1ttwB_



not modelled 13.2 43
PDB header:chaperone
Chain: B: PDB Molecule:yscm2;
PDBTitle: crystal structure of the yersinia pestis type iii secretion chaperone2 sych in complex with a stable fragment of yscm2
53c3q4iA_



not modelled 13.1 26
PDB header:hydrolase
Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein);
PDBTitle: crystal structure of cdp-chase in complex with gd3+
54c2fefB_



not modelled 12.9 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein pa2201;
PDBTitle: the crystal structure of protein pa2201 from pseudomonas aeruginosa
55d1zgha1



not modelled 12.9 20
Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
56d2b0va1



not modelled 12.7 19
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
57d1x51a1



not modelled 12.6 19
Fold:Nudix
Superfamily:Nudix
Family:MutY C-terminal domain-like
58c3dclC_



not modelled 12.5 25
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:tm1086;
PDBTitle: crystal structure of tm1086
59c2r5wA_



not modelled 12.5 23
PDB header:hydrolase, transferase
Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase;
PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis
60c3mpbA_



not modelled 12.4 22
PDB header:isomerase
Chain: A: PDB Molecule:sugar isomerase;
PDBTitle: z5688 from e. coli o157:h7 bound to fructose
61c3r03B_



not modelled 12.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:nudix hydrolase;
PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum
62c5gg7A_



not modelled 11.7 26
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family protein;
PDBTitle: crystal structure of mycobacterium smegmatis mutt1 in complex with 8-2 oxo-dgtp, 8-oxo-dgmp and pyrophosphate (i)
63d1ryaa_



not modelled 11.6 29
Fold:Nudix
Superfamily:Nudix
Family:GDP-mannose mannosyl hydrolase NudD
64c2rrkA_



not modelled 11.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:ctp pyrophosphohydrolase;
PDBTitle: solution structure of the e. coli orf135 protein
65c3hbrD_



not modelled 11.5 26
PDB header:hydrolase
Chain: D: PDB Molecule:oxa-48;
PDBTitle: crystal structure of oxa-48 beta-lactamase
66c4hfqB_



not modelled 11.4 21
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of udp-x diphosphatase
67c4kyxA_



not modelled 11.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribose pyrophosphatase mutt;
PDBTitle: crystal structure of adp-ribose pyrophosphatase mutt from rickettsia2 felis
68c4zbpC_



not modelled 10.9 24
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase 7;
PDBTitle: crystal structure of the ampcpr-bound atnudt7
69c2ctuA_



not modelled 10.7 73
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 483;
PDBTitle: solution structure of zinc finger domain from human zn2 finger protein 483
70d1k2ea_



not modelled 10.7 21
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
71c2lnbA_



not modelled 10.5 57
PDB header:immune system
Chain: A: PDB Molecule:z-dna-binding protein 1;
PDBTitle: solution nmr structure of n-terminal domain (6-74) of human zbp12 protein, northeast structural genomics consortium target hr8174a.
72c4z9nB_



not modelled 10.4 15
PDB header:transport protein
Chain: B: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding
PDBTitle: abc transporter / periplasmic binding protein from brucella ovis with2 glutathione bound
73c5l82A_



not modelled 10.3 33
PDB header:antibiotic
Chain: A: PDB Molecule:enterococcin k1;
PDBTitle: nmr structure of enterocin k1 in 50%/50% tfe/water
74d1q33a_



not modelled 10.2 18
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
75c4ccvA_



not modelled 10.1 23
PDB header:blood clotting
Chain: A: PDB Molecule:histidine-rich glycoprotein;
PDBTitle: crystal structure of histidine-rich glycoprotein n2 domain2 reveals redox activity at an interdomain disulfide bridge:3 implications for the regulation of angiogenesis
76c3fcmA_



not modelled 9.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family;
PDBTitle: crystal structure of a nudix hydrolase from clostridium perfringens
77c2qjoB_



not modelled 9.9 22
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase;
PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp.
78c2m4mA_



not modelled 9.8 24
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: solution structure of the rrm domain of the hypothetical protein2 cagl0m09691g from candida glabrata
79c3gz8C_



not modelled 9.7 22
PDB header:dna binding protein
Chain: C: PDB Molecule:mutt/nudix family protein;
PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis nrtr2 complexed with adp ribose
80c6nhsA_



not modelled 9.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the beta lactamase class d ybxi from nostoc
81c5g5tA_



not modelled 9.6 8
PDB header:hydrolase/dna
Chain: A: PDB Molecule:argonaute;
PDBTitle: structure of the argonaute protein from methanocaldcoccus janaschii in2 complex with guide dna
82c2p3nB_



not modelled 9.5 17
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: thermotoga maritima impase tm1415
83c3hhjA_



not modelled 9.5 26
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: crystal structure of mutator mutt from bartonella henselae
84c5eq9A_



not modelled 9.4 21
PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol monophosphatase;
PDBTitle: crystal structure of medicago truncatula histidinol-phosphate2 phosphatase (mthpp) in complex with l-histidinol phosphate and mg2+
85d1qjha_



not modelled 9.4 12
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
86c2ylnA_



not modelled 9.3 17
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein,
PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation
87c2ieeB_



not modelled 9.1 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:probable abc transporter extracellular-binding protein
PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis. northeast2 structural genomics consortium target sr574.
88c5onkA_



not modelled 9.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:yndl;
PDBTitle: native yndl
89d1pxza_



not modelled 8.9 60
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Pectate lyase-like
90c5zonA_



not modelled 8.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:histidinol-phosphatase;
PDBTitle: histidinol phosphate phosphatase from mycobacterium tuberculosis
91c5x1xA_



not modelled 8.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: solution nmr structure of dna mismatch repair protein mutt (family2 nudix hydrolase) from methicillin resistant staphylococcus aureus 252
92c3grnB_



not modelled 8.7 26
PDB header:hydrolase
Chain: B: PDB Molecule:mutt related protein;
PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1
93d2g7sa1



not modelled 8.4 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
94c3n77B_



not modelled 8.4 26
PDB header:hydrolase
Chain: B: PDB Molecule:nucleoside triphosphatase nudi;
PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2
95c5ln5A_



not modelled 8.4 42
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin and wlm domain-containing metalloprotease
PDBTitle: crystal structure of the wss1 e203q mutant from s. pombe
96c2xfmA_



not modelled 8.3 67
PDB header:rna/protein
Chain: A: PDB Molecule:piwi-like protein 1;
PDBTitle: complex structure of the miwi paz domain bound to methylated single2 stranded rna
97c5uxtC_



not modelled 8.3 57
PDB header:de novo protein
Chain: C: PDB Molecule:coiled-coil trimer with glu:trp:lys triad;
PDBTitle: coiled-coil trimer with glu:trp:lys triad
98d1kx5d_



not modelled 8.1 11
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
99d1puna_



not modelled 8.1 16
Fold:Nudix
Superfamily:Nudix
Family:MutT-like

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