Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1914c_(-)_2159928_2160335
DateFri Aug 2 13:30:53 BST 2019
Unique Job ID95c91c5fd34f3d4a
SequenceMVLSRTSTGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.932 Y:18.680 Z:17.967
Model (left) based on template c6fcoB_
Top template information
PDB header:transport protein
Chain: B: PDB Molecule:mitochondrial frataxin-like protein;
PDBTitle: structural and functional characterisation of frataxin (fxn) like2 protein from chaetomium thermophilum
Confidence and coverage
Confidence: 47.7% Coverage: 21%
29 residues ( 21% of your sequence) have been modelled with 47.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6fcoB_



47.7 21
PDB header:transport protein
Chain: B: PDB Molecule:mitochondrial frataxin-like protein;
PDBTitle: structural and functional characterisation of frataxin (fxn) like2 protein from chaetomium thermophilum
2d2fqla1



27.7 22
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
3d1ekga_



26.7 14
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
4c3iz6A_



24.2 20
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
5d2ga5a1



22.7 19
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
6c4zrmB_



22.5 12
PDB header:isomerase
Chain: B: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: crystal structure of udp-glucose 4-epimerase (tm0509) from2 hyperthermophilic eubacterium thermotoga maritima
7c5aj3h_



22.5 18
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: structure of the small subunit of the mammalian mitoribosome
8c4h5bB_



20.5 29
PDB header:unknown function
Chain: B: PDB Molecule:dr_1245 protein;
PDBTitle: crystal structure of dr_1245 from deinococcus radiodurans
9c4e0eB_



18.2 18
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a duf4450 family protein (bt_4147) from2 bacteroides thetaiotaomicron vpi-5482 at 2.90 a resolution
10c4jpdA_



17.8 15
PDB header:metal binding protein
Chain: A: PDB Molecule:protein cyay;
PDBTitle: the structure of cyay from burkholderia cenocepacia
11d1ew4a_



16.5 11
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
12c4hs5B_



15.1 11
PDB header:metal binding protein
Chain: B: PDB Molecule:protein cyay;
PDBTitle: frataxin from psychromonas ingrahamii as a model to study stability2 modulation within cyay protein family
13c5kz5H_



15.0 13
PDB header:transferase/oxidoreductase
Chain: H: PDB Molecule:frataxin, mitochondrial;
PDBTitle: architecture of the human mitochondrial iron-sulfur cluster assembly2 machinery: the complex formed by the iron donor, the sulfur donor,3 and the scaffold
14c2pzlB_



14.4 17
PDB header:sugar binding protein
Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmg in2 complex with nad and udp
15c6f46A_



13.9 78
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 1;
PDBTitle: structure of the transmembrane helix of bclxl in phospholipid2 nanodiscs
16c6nusA_



13.1 21
PDB header:viral protein
Chain: A: PDB Molecule:nsp12;
PDBTitle: sars-coronavirus nsp12 bound to nsp8 co-factor
17d1nvmb1



11.0 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
18c3j6vB_



10.6 31
PDB header:ribosome
Chain: B: PDB Molecule:28s ribosomal protein s2, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
19c2o61A_



9.7 15
PDB header:transcription/dna
Chain: A: PDB Molecule:transcription factor p65/interferon regulatory factor
PDBTitle: crystal structure of nfkb, irf7, irf3 bound to the interferon-b2 enhancer
20c4jn6B_



9.6 20
PDB header:lyase/oxidoreductase
Chain: B: PDB Molecule:acetaldehyde dehydrogenase;
PDBTitle: crystal structure of the aldolase-dehydrogenase complex from2 mycobacterium tuberculosis hrv37
21c6chgB_



not modelled 9.1 15
PDB header:transferase
Chain: B: PDB Molecule:klla0c10945p;
PDBTitle: crystal structure of the yeast compass catalytic module
22d1a6ca2



not modelled 9.0 12
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
23c3uv0B_



not modelled 8.9 22
PDB header:protein binding
Chain: B: PDB Molecule:mutator 2, isoform b;
PDBTitle: crystal structure of the drosophila mu2 fha domain
24c4ksnC_



not modelled 8.7 50
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:sdbc;
PDBTitle: c-terminal domain of sdbc protein from legionella pneumophila.
25c4cwuT_



not modelled 8.4 14
PDB header:virus
Chain: T: PDB Molecule:core-capsid bridging protein;
PDBTitle: crystal structure derived models of adenovirus cement proteins at 3.8a
26d1orra_



not modelled 8.2 10
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
27c4bz4D_



not modelled 8.0 43
PDB header:copper-binding protein
Chain: D: PDB Molecule:copper-repressible polypeptide;
PDBTitle: cora is a surface-associated copper-binding protein2 important in methylomicrobium album bg8 copper acquisition
28c4gu8G_



not modelled 8.0 29
PDB header:sugar binding protein
Chain: G: PDB Molecule:burkholderia oklahomensis agglutinin (boa);
PDBTitle: crystal structure of burkholderia oklahomensis agglutinin (boa)
29c5yalA_



not modelled 8.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:esterase;
PDBTitle: ferulic acid esterase from streptomyces cinnamoneus at 1.5 a2 resolution
30c2vduE_



not modelled 7.8 14
PDB header:transferase
Chain: E: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex
31c1nvmB_



not modelled 7.8 13
PDB header:lyase/oxidoreductase
Chain: B: PDB Molecule:acetaldehyde dehydrogenase (acylating);
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
32c2p5uC_



not modelled 7.6 17
PDB header:isomerase
Chain: C: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-epimerase2 complex with nad
33c2mw1A_



not modelled 7.5 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lipocalin-like protein;
PDBTitle: nmr structure of the protein np_809137.1 from bacteroides2 thetaiotaomicron
34c3h2zA_



not modelled 6.9 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:mannitol-1-phosphate 5-dehydrogenase;
PDBTitle: the crystal structure of mannitol-1-phosphate dehydrogenase from2 shigella flexneri
35c4qlbD_



not modelled 6.8 34
PDB header:transferase
Chain: D: PDB Molecule:probable glycogen [starch] synthase;
PDBTitle: structural basis for the recruitment of glycogen synthase by2 glycogenin
36c5jnmA_



not modelled 6.5 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:mannitol-1-phosphate 5-dehydrogenase;
PDBTitle: crystal structure of mtld from staphylococcus aureus at 1.7-angstrom2 resolution
37c2pk3B_



not modelled 6.4 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase;
PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
38d2uubb1



not modelled 6.3 34
Fold:Flavodoxin-like
Superfamily:Ribosomal protein S2
Family:Ribosomal protein S2
39c5o5jV_



not modelled 6.3 28
PDB header:ribosome
Chain: V: PDB Molecule:30s ribosomal protein s2;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
40c2q1wC_



not modelled 6.3 12
PDB header:sugar binding protein
Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+
41c3e20C_



not modelled 6.2 15
PDB header:translation
Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: crystal structure of s.pombe erf1/erf3 complex
42c1n7gB_



not modelled 6.0 13
PDB header:lyase
Chain: B: PDB Molecule:gdp-d-mannose-4,6-dehydratase;
PDBTitle: crystal structure of the gdp-mannose 4,6-dehydratase2 ternary complex with nadph and gdp-rhamnose.
43c2o6dB_



not modelled 5.7 24
PDB header:membrane protein, protein binding
Chain: B: PDB Molecule:34 kda membrane antigen;
PDBTitle: structure of native rtp34 from treponema pallidum
44d1hn0a3



not modelled 5.6 50
Fold:Hyaluronate lyase-like, C-terminal domain
Superfamily:Hyaluronate lyase-like, C-terminal domain
Family:Hyaluronate lyase-like, C-terminal domain
45c2lw6A_



not modelled 5.4 42
PDB header:apoptosis
Chain: A: PDB Molecule:avrpiz-t protein;
PDBTitle: solution structure of an avirulence protein avrpiz-t from pathogen2 magnaportheoryzae
46c4twrA_



not modelled 5.1 14
PDB header:isomerase
Chain: A: PDB Molecule:nad binding site:nad-dependent epimerase/dehydratase:udp-
PDBTitle: structure of udp-glucose 4-epimerase from brucella abortus

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