Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1916_(aceAb)_2161573_2162769
DateFri Aug 2 13:30:53 BST 2019
Unique Job ID6a18d71bb784db52
SequenceMTYGEAVADV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.999 Y:49.661 Z:106.537
Model (left) based on template d1dqua_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
Confidence and coverage
Confidence:100.0% Coverage: 54%
213 residues ( 54% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1dqua_
100.0 36
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
2c5e9fD_
100.0 37
PDB header:lyase
Chain: D: PDB Molecule:isocitrate lyase;
PDBTitle: structural insights of isocitrate lyases from magnaporthe oryzae
3d1f61a_
100.0 40
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
4c3eolB_
100.0 40
PDB header:lyase
Chain: B: PDB Molecule:isocitrate lyase;
PDBTitle: 2.0a crystal structure of isocitrate lyase from brucella melitensis2 (p43212)
5c3i4eA_
100.0 36
PDB header:lyase
Chain: A: PDB Molecule:isocitrate lyase;
PDBTitle: crystal structure of isocitrate lyase from burkholderia2 pseudomallei
6c3e5bB_
100.0 39
PDB header:lyase
Chain: B: PDB Molecule:isocitrate lyase;
PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella melitensis
7d1igwa_
100.0 36
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
8c6g1oA_
100.0 26
PDB header:lyase
Chain: A: PDB Molecule:isocitrate lyase;
PDBTitle: structure of pseudomonas aeruginosa isocitrate lyase, icl
9c3fa4D_
97.9 24
PDB header:lyase
Chain: D: PDB Molecule:2,3-dimethylmalate lyase;
PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form
10c4lsbA_
97.8 24
PDB header:lyase
Chain: A: PDB Molecule:lyase/mutase;
PDBTitle: crystal structure of a putative lyase/mutase from burkholderia2 cenocepacia j2315
11c3b8iF_
97.7 20
PDB header:lyase
Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase;
PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
12c3eooL_
97.6 27
PDB header:lyase
Chain: L: PDB Molecule:methylisocitrate lyase;
PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
13c3lyeA_
97.2 25
PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
14d1ujqa_
97.2 27
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
15d1s2wa_
97.1 21
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
16c1zlpA_
97.0 18
PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
17c3ih1A_
96.9 21
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
18d1muma_
95.9 30
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
19c4mg4G_
91.9 24
PDB header:unknown function
Chain: G: PDB Molecule:phosphonomutase;
PDBTitle: crystal structure of a putative phosphonomutase from burkholderia2 cenocepacia j2315
20c5uncB_
85.1 18
PDB header:isomerase
Chain: B: PDB Molecule:phosphoenolpyruvate phosphomutase;
PDBTitle: the crystal structure of phosphoenolpyruvate phosphomutase from2 streptomyces platensis subsp. rosaceus
21c2ze3A_
not modelled 81.3 19
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
22c2qiwA_
not modelled 81.0 14
PDB header:transferase
Chain: A: PDB Molecule:pep phosphonomutase;
PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
23c2hjpA_
not modelled 73.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:phosphonopyruvate hydrolase;
PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++
24d3bxda1
not modelled 61.9 26
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:MioX-like
25c2huoA_
not modelled 61.9 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:inositol oxygenase;
PDBTitle: crystal structure of mouse myo-inositol oxygenase in complex with2 substrate
26d2ibna1
not modelled 53.3 23
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:MioX-like
27c2p2gD_
not modelled 52.5 14
PDB header:transferase
Chain: D: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase from mycobacterium2 tuberculosis (rv1656): orthorhombic form
28c5mp4C_
not modelled 43.5 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:protoplast secreted protein 2;
PDBTitle: the structure of pst2p from saccharomyces cerevisiae
29c2x48B_
not modelled 41.4 26
PDB header:viral protein
Chain: B: PDB Molecule:cag38821;
PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1
30c2yfkA_
not modelled 39.9 16
PDB header:transferase
Chain: A: PDB Molecule:aspartate/ornithine carbamoyltransferase;
PDBTitle: crystal structure of a putative transcarbamoylase from2 enterococcus faecalis
31c6c4lC_
not modelled 38.7 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:yersinopine dehydrogenase;
PDBTitle: yersinopine dehydrogenase (ypodh) - apo
32d2j8ga2
not modelled 37.0 14
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:1,4-beta-N-acetylmuraminidase
33d3bfxa1
not modelled 35.2 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:PAPS sulfotransferase
34d1vyra_
not modelled 33.6 17
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
35c5n6yC_
not modelled 32.4 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:nitrogenase vanadium-iron protein delta chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
36c4bhhZ_
not modelled 31.5 28
PDB header:viral protein/rna
Chain: Z: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of tetramer of la crosse virus nucleoprotein in2 complex with ssrna
37d2fiqa1
not modelled 29.5 30
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:GatZ-like
38d1knwa2
not modelled 28.2 12
Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
39c2f61A_
not modelled 26.9 29
PDB header:hydrolase
Chain: A: PDB Molecule:acid beta-glucosidase;
PDBTitle: crystal structure of partially deglycosylated acid beta-glucosidase
40c1stzB_
not modelled 25.8 18
PDB header:transcription
Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog;
PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution
41c1zd1B_
not modelled 24.9 26
PDB header:transferase
Chain: B: PDB Molecule:sulfotransferase 4a1;
PDBTitle: human sulfortransferase sult4a1
42c3c6cA_
not modelled 24.3 12
PDB header:hydrolase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution
43c3euhF_
not modelled 23.6 26
PDB header:cell cycle
Chain: F: PDB Molecule:muke;
PDBTitle: crystal structure of the muke-mukf complex
44c6b4cH_
not modelled 23.0 22
PDB header:antiviral protein
Chain: H: PDB Molecule:viperin;
PDBTitle: structure of viperin from trichoderma virens
45c6nmiD_
not modelled 22.1 25
PDB header:transcription
Chain: D: PDB Molecule:general transcription factor iih subunit 4, p52;
PDBTitle: cryo-em structure of the human tfiih core complex
46c6fvjB_
not modelled 22.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:thioesterase;
PDBTitle: tesa a major thioesterase from mycobacterium tuberculosis
47d2a3ra1
not modelled 21.7 31
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:PAPS sulfotransferase
48c2j8fA_
not modelled 21.7 14
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of the modular cpl-1 endolysin complexed with a2 peptidoglycan analogue (e94q mutant in complex with a disaccharide-3 pentapeptide)
49c6ckgA_
not modelled 20.4 42
PDB header:transferase
Chain: A: PDB Molecule:d-glycerate 3-kinase;
PDBTitle: d-glycerate 3-kinase from cryptococcus neoformans var. grubii serotype2 a (h99 / atcc 208821 / cbs 10515 / fgsc 9487)
50c3bkhA_
not modelled 20.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
51c2h8kA_
not modelled 19.9 15
PDB header:transferase
Chain: A: PDB Molecule:sult1c3 splice variant d;
PDBTitle: human sulfotranferase sult1c3 in complex with pap
52c4qblF_
not modelled 19.7 15
PDB header:hydrolase
Chain: F: PDB Molecule:vrr-nuc;
PDBTitle: vrr_nuc domain protein
53c2aapA_
not modelled 19.6 56
PDB header:toxin
Chain: A: PDB Molecule:jingzhaotoxin-vii;
PDBTitle: solution structure of jingzhaotoxin-vii
54d1xmba2
not modelled 19.3 39
Fold:Ferredoxin-like
Superfamily:Bacterial exopeptidase dimerisation domain
Family:Bacterial exopeptidase dimerisation domain
55d2cyya2
not modelled 19.3 15
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
56c3pnnA_
not modelled 19.3 18
PDB header:transferase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83
57d2rbia_
not modelled 19.3 15
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Bacterial ribonucleases
58c6e10c_
not modelled 18.0 50
PDB header:protein transport
Chain: C: PDB Molecule:exported protein 2;
PDBTitle: ptex core complex in the engaged (extended) state
59d1goua_
not modelled 17.9 17
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Bacterial ribonucleases
60c4rapD_
not modelled 17.7 14
PDB header:transferase
Chain: D: PDB Molecule:glycosyltransferase tibc;
PDBTitle: crystal structure of bacterial iron-containing dodecameric2 glycosyltransferase tibc from enterotoxigenic e.coli h10407
61d2c7fa2
not modelled 17.7 22
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
62c4c0xA_
not modelled 17.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: the crystal strucuture of ppazor in complex with anthraquinone-2-2 sulfonate
63c2yxgD_
not modelled 17.4 13
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa)
64c1oahA_
not modelled 17.3 13
PDB header:reductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).
65d1oaha_
not modelled 17.3 13
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif
66c6n2fB_
not modelled 16.9 15
PDB header:lyase
Chain: B: PDB Molecule:diaminopimelate decarboxylase 2, chloroplastic;
PDBTitle: meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform2 2)
67d2csta_
not modelled 16.8 10
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
68c3b6iB_
not modelled 16.6 21
PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
69c6o4nB_
not modelled 16.5 19
PDB header:hydrolase
Chain: B: PDB Molecule:enolase;
PDBTitle: crystal structure of enolase from chlamydia trachomatis
70c2wagA_
not modelled 16.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme, putative;
PDBTitle: the structure of a family 25 glycosyl hydrolase from2 bacillus anthracis.
71c3bdkB_
not modelled 15.9 29
PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
72c3rfaA_
not modelled 15.8 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n;
PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine
73c5ywwA_
not modelled 15.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
74c3w26A_
not modelled 15.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 10;
PDBTitle: the high-resolution crystal structure of tsxyla, intracellular2 xylanase from /thermoanaerobacterium saccharolyticum jw/sl-ys485/:3 the complex of the e146a mutant with xylotriose
75c1y9jA_
not modelled 15.2 46
PDB header:protein transport
Chain: A: PDB Molecule:sec1 family domain containing protein 1;
PDBTitle: solution structure of the rat sly1 n-terminal domain
76d1ewqa4
not modelled 15.2 33
Fold:MutS N-terminal domain-like
Superfamily:DNA repair protein MutS, domain I
Family:DNA repair protein MutS, domain I
77c5tv7A_
not modelled 15.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidoglycan-binding/hydrolysing protein;
PDBTitle: 2.05 angstrom resolution crystal structure of peptidoglycan-binding2 protein from clostridioides difficile in complex with glutamine3 hydroxamate.
78c4wnyA_
not modelled 15.1 16
PDB header:signaling protein
Chain: A: PDB Molecule:universal stress protein;
PDBTitle: crystal structure of a protein from the universal stress protein2 family from burkholderia pseudomallei
79c4eacC_
not modelled 15.0 28
PDB header:lyase
Chain: C: PDB Molecule:mannonate dehydratase;
PDBTitle: crystal structure of mannonate dehydratase from escherichia coli2 strain k12
80d1qw9a2
not modelled 14.4 16
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
81d1se7a_
not modelled 13.8 18
Fold:DNA polymerase III theta subunit-like
Superfamily:DNA polymerase III theta subunit-like
Family:DNA polymerase III theta subunit-like
82d1tz9a_
not modelled 12.9 33
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:UxuA-like
83d1tdha3
not modelled 12.9 78
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
84c1knwA_
not modelled 12.8 6
PDB header:lyase
Chain: A: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: crystal structure of diaminopimelate decarboxylase
85c1cpbA_
not modelled 12.8 8
PDB header:hydrolase (c-terminal peptidase)
Chain: A: PDB Molecule:carboxypeptidase b;
PDBTitle: structure of carboxypeptidase b at 2.8 angstroms resolution
86d1h3na3
not modelled 12.7 13
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
87c2ehhE_
not modelled 12.7 12
PDB header:lyase
Chain: E: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus
88d1vqom1
not modelled 12.5 50
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:L15e
89d1us3a2
not modelled 12.5 12
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
90c3ps9A_
not modelled 12.4 27
PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli
91c6hq8B_
not modelled 12.3 30
PDB header:hydrolase
Chain: B: PDB Molecule:beta-1,3-oligosaccharide phosphorylase;
PDBTitle: bacterial beta-1,3-oligosaccharide phosphorylase from gh149 with2 laminarihexaose bound at a surface site
92d1q8ia2
not modelled 12.3 15
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
93c4j1jA_
not modelled 12.2 26
PDB header:viral protein/dna
Chain: A: PDB Molecule:nucleocapsid;
PDBTitle: leanyer orthobunyavirus nucleoprotein-ssdna complex
94d1mhyd_
not modelled 12.2 23
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
95c3u7iB_
not modelled 12.1 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: the crystal structure of fmn-dependent nadh-azoreductase 1 (gbaa0966)2 from bacillus anthracis str. ames ancestor
96c3d7nA_
not modelled 12.1 15
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
97d1tgoa2
not modelled 11.8 31
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
98c3eukL_
not modelled 11.8 28
PDB header:cell cycle
Chain: L: PDB Molecule:chromosome partition protein muke;
PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head domain)-2 atpgammas complex, asymmetric dimer
99c4r81C_
not modelled 11.6 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase;
PDBTitle: nad(p)h:quinone oxidoreductase from methanothermobacter marburgensis

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