Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1922_(-)_2174074_2175189
DateFri Aug 2 13:30:54 BST 2019
Unique Job IDb6c0e3c2009d8ad3
SequenceMDSTVTASIR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.079 Y:58.220 Z:41.367
Model (left) based on template c2qmiH_
Top template information
PDB header:hydrolase
Chain: H: PDB Molecule:pbp related beta-lactamase;
PDBTitle: structure of the octameric penicillin-binding protein2 homologue from pyrococcus abyssi
Confidence and coverage
Confidence:100.0% Coverage: 89%
329 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qmiH_
100.0 25
PDB header:hydrolase
Chain: H: PDB Molecule:pbp related beta-lactamase;
PDBTitle: structure of the octameric penicillin-binding protein2 homologue from pyrococcus abyssi
2c1ei5A_
100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:d-aminopeptidase;
PDBTitle: crystal structure of a d-aminopeptidase from ochrobactrum2 anthropi
3c4y7pA_
100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:alkaline d-peptidase;
PDBTitle: structure of alkaline d-peptidase from bacillus cereus
4d2drwa1
100.0 24
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
5d1ei5a3
100.0 25
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
6d1onha_
100.0 23
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
7c4gdnB_
100.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:protein flp;
PDBTitle: structure of fmta-like protein
8c3tg9A_
100.0 24
PDB header:penicillin binding protein
Chain: A: PDB Molecule:penicillin-binding protein;
PDBTitle: the crystal structure of penicillin binding protein from bacillus2 halodurans
9c2wzzA_
100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: amp-c beta-lactamase (pseudomonas aeruginosa)in complex2 with compound m-03
10c5zh8B_
100.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:protein fmta;
PDBTitle: crystal structure of fmta from staphylococcus aureus at 2.58 a
11d1yqsa1
100.0 25
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
12d1rgya_
100.0 23
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
13c4ivkA_
100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:carboxylesterases;
PDBTitle: crystal structure of a fammily viii carboxylesterase in a complex with2 cephalothin.
14d2hdsa1
100.0 23
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
15c3o3vB_
100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of clbp peptidase domain
16c2qz6A_
100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: first crystal structure of a psychrophile class c beta-2 lactamase
17c5e2hB_
100.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of d-alanine carboxypeptidase ampc from2 mycobacterium smegmatis
18c3wwxA_
100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:s12 family peptidase;
PDBTitle: crystal structure of d-stereospecific amidohydrolase from streptomyces2 sp. 82f2
19c3ozhA_
100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase/d-alanine carboxypeptidase;
PDBTitle: crystal structure of beta-lactamase/d-alanine carboxypeptidase from2 yersinia pestis
20c4p6bB_
100.0 20
PDB header:hydrolase
Chain: B: PDB Molecule:est-y29;
PDBTitle: crystal structure of est-y29,a novel penicillin-binding protein/beta-2 lactamase homolog from a metagenomic library
21c1zkjA_
not modelled 100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:extended-spectrum beta-lactamase;
PDBTitle: structural basis for the extended substrate spectrum of cmy-2 10, a plasmid-encoded class c beta-lactamase
22c3ws1A_
not modelled 100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: n288q-n321q mutant beta-lactamase derived from chromohalobacter sp.5602 (condition-1b)
23c5gkvA_
not modelled 100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:esterase a;
PDBTitle: crystal structure of a novel penicillin-binding protein (pbp) homolog2 from caulobacter crescentus
24c4netA_
not modelled 100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:ampc;
PDBTitle: crystal structure of adc-1 beta-lactamase
25d1ci9a_
not modelled 100.0 28
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
26c5e2gA_
not modelled 100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of d-alanine carboxypeptidase ampc from burkholderia2 cenocepacia
27c3hleA_
not modelled 100.0 17
PDB header:transferase
Chain: A: PDB Molecule:transesterase;
PDBTitle: simvastatin synthase (lovd), from aspergillus terreus, s5 mutant, s76a2 mutant, complex with monacolin j acid
28c3zytA_
not modelled 100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:esterase a;
PDBTitle: structure determination of esta from arthrobacter nitroguajacolicus2 rue61a
29c6njkA_
not modelled 100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase from sulfitobacter sp. ee-36
30c5gmxA_
not modelled 100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:carboxylesterase;
PDBTitle: crystal structure of a family viii carboxylesterase
31c5eviC_
not modelled 100.0 22
PDB header:hydrolase
Chain: C: PDB Molecule:beta-lactamase/d-alanine carboxypeptidase;
PDBTitle: crystal structure of beta-lactamase/d-alanine carboxypeptidase from2 pseudomonas syringae
32c5evlA_
not modelled 100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase/d-alanine carboxypeptidase from2 chromobacterium violaceum
33c5tgfB_
not modelled 100.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative beta-lactamase from bacteroides dorei2 dsm 17855
34d2dcfa1
not modelled 100.0 20
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
35c4gb7A_
not modelled 100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:6-aminohexanoate-dimer hydrolase;
PDBTitle: putative 6-aminohexanoate-dimer hydrolase from bacillus anthracis
36c3i7jB_
not modelled 100.0 29
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase mb2281c;
PDBTitle: crystal structure of a beta-lactamase (mb2281c) from mycobacterium2 bovis, northeast structural genomics consortium target mbr246
37c2j7vA_
not modelled 99.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:tll2115 protein;
PDBTitle: structure of pbp-a
38d1m40a_
not modelled 99.5 17
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
39d1tvfa2
not modelled 99.5 16
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
40c4hesA_
not modelled 99.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase class a-like protein;
PDBTitle: structure of a beta-lactamase class a-like protein from veillonella2 parvula.
41c4ewfA_
not modelled 99.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: the crystal structure of beta-lactamase from sphaerobacter2 thermophilus dsm 20745
42c5tr7A_
not modelled 99.4 17
PDB header:penicillin-binding protein
Chain: A: PDB Molecule:d-alanyl-d-alanine carboxypeptidase;
PDBTitle: crystal structure of a putative d-alanyl-d-alanine carboxypeptidase2 from vibrio cholerae o1 biovar eltor str. n16961
43c2qpnA_
not modelled 99.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase ges-1;
PDBTitle: ges-1 beta-lactamase
44d1hzoa_
not modelled 99.4 16
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
45c1xp4C_
not modelled 99.4 23
PDB header:hydrolase
Chain: C: PDB Molecule:d-alanyl-d-alanine carboxypeptidase;
PDBTitle: crystal structure of a peptidoglycan synthesis regulatory2 factor (pbp3) from streptococcus pneumoniae
46d1n9ba_
not modelled 99.4 17
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
47c1tvfA_
not modelled 99.4 19
PDB header:penicillin binding
Chain: A: PDB Molecule:penicillin binding protein 4;
PDBTitle: crystal structure of penicillin-binding protein 4 (pbp4)2 from staphylococcus aureus
48c3humB_
not modelled 99.4 17
PDB header:hydrolase/antibiotics
Chain: B: PDB Molecule:penicillin-binding protein 4;
PDBTitle: crystal structure of penicillin binding protein 4 from staphylococcus2 aureus col in complex with cefotaxime
49d1xp4a2
not modelled 99.4 22
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
50c2v20A_
not modelled 99.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase tem;
PDBTitle: structure of a tem-1 beta-lactamase insertant allosterically regulated2 by kanamycin and anions. complex with sulfate.
51c1z6fA_
not modelled 99.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:penicillin-binding protein 5;
PDBTitle: crystal structure of penicillin-binding protein 5 from e. coli in2 complex with a boronic acid inhibitor
52c5vpqA_
not modelled 99.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase from burkholderia phymatum
53c5tfqA_
not modelled 99.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of a representative of class a beta-lactamase from2 bacteroides cellulosilyticus dsm 14838
54c4b88A_
not modelled 99.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: ancestral (gnca) beta-lactamase class a
55c4mxbB_
not modelled 99.3 19
PDB header:hydrolase/antibiotic
Chain: B: PDB Molecule:bel-1;
PDBTitle: crystal structure of extended-spectrum beta-lactamase bel-1 in complex2 with imipenem
56d1g6aa_
not modelled 99.3 17
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
57d1buea_
not modelled 99.3 14
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
58c2wuqA_
not modelled 99.3 18
PDB header:transcription
Chain: A: PDB Molecule:beta-lactamase regulatory protein blab;
PDBTitle: crystal structure of blab protein from streptomyces cacaoi
59c5fsrB_
not modelled 99.3 15
PDB header:hydrolase
Chain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacd;
PDBTitle: crystal structure of penicillin binding protein 6b from2 escherichia coli
60d1o7ea_
not modelled 99.3 18
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
61d1iysa_
not modelled 99.3 17
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
62c4k91A_
not modelled 99.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:d-ala-d-ala-carboxypeptidase;
PDBTitle: crystal structure of penicillin-binding protein 5 (pbp5) from2 pseudomonas aeruginosa in apo state
63c3p09B_
not modelled 99.3 17
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase from francisella tularensis
64d3beca2
not modelled 99.3 17
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
65c5hw3A_
not modelled 99.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of a beta lactamase from burkholderia vietnamiensis
66d2cc1a1
not modelled 99.3 17
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
67c3a3jA_
not modelled 99.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:pbp5;
PDBTitle: crystal structures of penicillin binding protein 5 from haemophilus2 influenzae
68c6bn3A_
not modelled 99.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: ctx-m-151 class a extended-spectrum beta-lactamase apo crystal2 structure at 1.3 angstrom resolution.
69c3it9B_
not modelled 99.3 17
PDB header:hydrolase
Chain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacc;
PDBTitle: crystal structure of penicillin-binding protein 6 (pbp6) from e. coli2 in apo state
70c2wuqB_
not modelled 99.3 16
PDB header:transcription
Chain: B: PDB Molecule:beta-lactamase regulatory protein blab;
PDBTitle: crystal structure of blab protein from streptomyces cacaoi
71c6niqB_
not modelled 99.3 17
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the putative class a beta-lactamase penp from2 rhodopseudomonas palustris
72c2ov5A_
not modelled 99.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:carbapenemase;
PDBTitle: crystal structure of the kpc-2 carbapenemase
73c5zqeC_
not modelled 99.2 23
PDB header:antibiotic
Chain: C: PDB Molecule:lmo2812 protein;
PDBTitle: crystal structure of penicillin-binding protein d2 from listeria2 monocytogenes in the cefuroxime bound form
74c3p09A_
not modelled 99.2 18
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase from francisella tularensis
75c6mk6C_
not modelled 99.2 17
PDB header:hydrolase
Chain: C: PDB Molecule:beta-lactamase;
PDBTitle: carbapenemase vcc-1 from vibrio cholerae n14-02106
76d1i2sa_
not modelled 99.2 17
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
77c1i2sA_
not modelled 99.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: beta-lactamase from bacillus licheniformis bs3
78d1bsga_
not modelled 99.2 16
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
79d1dy6a_
not modelled 99.2 16
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
80c6osuA_
not modelled 99.2 22
PDB header:hydrolase
Chain: A: PDB Molecule:d-alanyl-d-alanine carboxypeptidase (penicillin binding
PDBTitle: crystal structure of the d-alanyl-d-alanine carboxypeptidase dacd from2 francisella tularensis
81d1es5a_
not modelled 99.2 20
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
82c3w4pA_
not modelled 99.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of peni beta-lactamase from burkholderia2 pseudomallei at ph7.5
83c4eqiA_
not modelled 99.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:carbapenem-hydrolizing beta-lactamase sfc-1;
PDBTitle: crystal structure of serratia fonticola carbapenemase sfc-1
84c5hx9A_
not modelled 99.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase from burkholderia vietnamiensis
85c5e2eB_
not modelled 99.1 16
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase precursor blaa from yersinia2 enterocolitica
86d1e25a_
not modelled 99.1 21
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
87c4dxbB_
not modelled 99.1 24
PDB header:sugar binding protein, hydrolase
Chain: B: PDB Molecule:maltose-binding periplasmic protein, beta-lactamase tem
PDBTitle: 2.29a structure of the engineered mbp tem-1 fusion protein rg13 in2 complex with zinc, p1 space group
88c5e43A_
not modelled 99.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of beta-lactamase sros_5706 from streptosporangium2 roseum
89c3cjmA_
not modelled 99.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-lactamase;
PDBTitle: crystal structure of putative beta-lactamase (np_815223.1) from2 enterococcus faecalis v583 at 1.50 a resolution
90c4yfmA_
not modelled 99.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: class a beta-lactamase from mycobacterium abscessus
91c3w4qC_
not modelled 99.0 18
PDB header:hydrolase
Chain: C: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of pena beta-lactamase from burkholderia multivorans2 at ph4.2
92c3cg5A_
not modelled 99.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the covalent adduct formed between tb2 b-lactamase and clavulanate
93c6aziA_
not modelled 99.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:d-alanyl-d-alanine endopeptidase;
PDBTitle: 1.75 angstrom resolution crystal structure of d-alanyl-d-alanine2 endopeptidase from enterobacter cloacae in complex with covalently3 bound boronic acid
94c3dw0B_
not modelled 99.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:class a carbapenemase kpc-2;
PDBTitle: crystal structure of the class a carbapenemase kpc-2 at 1.62 angstrom resolution
95c5gs8A_
not modelled 98.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of tla-3 extended-spectrum beta-lactamase
96c4pprA_
not modelled 98.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:penicillin-binding protein dacb1;
PDBTitle: crystal structure of mycobacterium tuberculosis d,d-peptidase rv33302 in complex with meropenem
97c1w7fB_
not modelled 98.9 17
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the class a beta-lactamase bs32 inhibited with isocitrate
98c3qhyA_
not modelled 98.9 14
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: structural, thermodynamic and kinetic analysis of the picomolar2 binding affinity interaction of the beta-lactamase inhibitor protein-3 ii (blip-ii) with class a beta-lactamases
99c3lezA_
not modelled 98.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of a halotolerant bacterial beta-lactamase
100d1alqa_
not modelled 98.8 15
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
101c6nj1A_
not modelled 98.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of class a beta-lactamase from clostridium kluyveri2 dsm 555
102c2xftA_
not modelled 98.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:orf12;
PDBTitle: structural and mechanistic studies on a cephalosporin esterase from2 the clavulanic acid biosynthesis pathway
103d1djaa_
not modelled 98.8 16
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
104c2bcfA_
not modelled 98.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:probable d-alanyl-d-alanine carboxypeptidase dacb2;
PDBTitle: crystal structure of a evolved putative penicillin-binding protein2 homolog, rv2911, from mycobacterium tuberculosis.
105c5aq7B_
not modelled 98.6 21
PDB header:chaperone
Chain: B: PDB Molecule:d12_db04v3;
PDBTitle: darpin-based crystallization chaperones exploit molecular geometry as2 a screening dimension in protein crystallography
106c3mfdB_
not modelled 98.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacb;
PDBTitle: the structure of the beta-lactamase superfamily domain of d-alanyl-d-2 alanine carboxypeptidase from bacillus subtilis
107c6nhuD_
not modelled 97.5 14
PDB header:hydrolase
Chain: D: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the beta lactamase class d ybxi from2 agrobacterium fabrum
108c2jc7A_
not modelled 97.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase oxa-24;
PDBTitle: the crystal structure of the carbapenemase oxa-24 reveals2 new insights into the mechanism of carbapenem-hydrolysis
109c3oc2A_
not modelled 97.3 14
PDB header:penicillin-binding protein
Chain: A: PDB Molecule:penicillin-binding protein 3;
PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa
110c4gn2A_
not modelled 97.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:oxacillinase;
PDBTitle: crystal structure of oxa-45, a class d beta-lactamase with extended2 spectrum activity
111c6ni0A_
not modelled 97.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the beta lactamase class d ybxi from burkholderia2 thailandensis
112d1nrfa_
not modelled 97.0 18
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
113c6nhsA_
not modelled 96.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the beta lactamase class d ybxi from nostoc
114d1xa1a_
not modelled 96.9 11
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
115c5ctmB_
not modelled 96.8 16
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: structure of bpu1 beta-lactamase
116c4zdxA_
not modelled 96.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: structure of oxa-51 beta-lactamase
117c3pbqA_
not modelled 96.5 13
PDB header:hydrolase/antibiotic
Chain: A: PDB Molecule:penicillin-binding protein 3;
PDBTitle: crystal structure of pbp3 complexed with imipenem
118c3lo7B_
not modelled 96.5 16
PDB header:transferase
Chain: B: PDB Molecule:penicillin-binding protein a;
PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis
119c4bjpA_
not modelled 96.0 17
PDB header:transferase
Chain: A: PDB Molecule:penicillin binding protein transpeptidase domain protein;
PDBTitle: crystal structure of e. coli penicillin binding protein 3
120d1rp5a4
not modelled 95.9 20
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below