Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1927_(-)_2179680_2180453
DateFri Aug 2 13:30:54 BST 2019
Unique Job ID7e15273f3f21dcb5
SequenceVTAIPGPSGA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.609 Y:48.225 Z:40.297
Model (left) based on template c3bgtD_
Top template information
PDB header:lyase
Chain: D: PDB Molecule:probable acetoacetate decarboxylase;
PDBTitle: structural studies of acetoacetate decarboxylase
Confidence and coverage
Confidence: 99.7% Coverage: 48%
124 residues ( 48% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
244 residues ( 95%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bgtD_



99.7 16
PDB header:lyase
Chain: D: PDB Molecule:probable acetoacetate decarboxylase;
PDBTitle: structural studies of acetoacetate decarboxylase
2c3bh2C_



99.6 12
PDB header:lyase
Chain: C: PDB Molecule:acetoacetate decarboxylase;
PDBTitle: structural studies of acetoacetate decarboxylase
3c4jmeA_



99.4 17
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein mppr;
PDBTitle: enduracididine biosynthesis enzyme mppr complexed with 2-keto-2 enduracididine
4d3c8wa1



99.0 13
Fold:Acetoacetate decarboxylase-like
Superfamily:Acetoacetate decarboxylase-like
Family:Acetoacetate decarboxylase-like
5c4zbtB_



99.0 15
PDB header:lyase
Chain: B: PDB Molecule:acetoacetate decarboxylase;
PDBTitle: streptomyces bingchenggensis aldolase-dehydratase in schiff base2 complex with pyruvate
6c5upbA_



98.9 14
PDB header:lyase
Chain: A: PDB Molecule:acetoacetate decarboxylase;
PDBTitle: swit_4259, an acetoacetate decarboxylase-like enzyme from sphingomonas2 wittichii rw1
7d3cmba1



98.6 13
Fold:Acetoacetate decarboxylase-like
Superfamily:Acetoacetate decarboxylase-like
Family:Acetoacetate decarboxylase-like
8c5jxpA_



19.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
9d1s1da_



14.0 31
Fold:5-bladed beta-propeller
Superfamily:Apyrase
Family:Apyrase
10c2yueA_



12.6 17
PDB header:rna binding protein
Chain: A: PDB Molecule:protein neuralized;
PDBTitle: solution structure of the neuz (nhr) domain in neuralized2 from drosophila melanogaster
11d1ttza_



10.7 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
12c3wolB_



10.3 25
PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidyl aminopeptidase bii;
PDBTitle: crystal structure of the dap bii dipeptide complex i
13c5w6lA_



9.5 12
PDB header:toxin
Chain: A: PDB Molecule:rtx repeat-containing cytotoxin;
PDBTitle: crystal structure of rrsp, a martx toxin effector domain from vibrio2 vulnificus cmcp6
14c3jb9K_



7.5 40
PDB header:rna binding protein/rna
Chain: K: PDB Molecule:pre-mrna-splicing factor prp5;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
15c2j58G_



7.3 13
PDB header:membrane protein
Chain: G: PDB Molecule:outer membrane lipoprotein wza;
PDBTitle: the structure of wza
16c5ijlA_



6.8 19
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
17c3fxtB_



5.7 16
PDB header:gene regulation
Chain: B: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6;
PDBTitle: crystal structure of the n-terminal domain of human nudt6
18d2b5dx1



5.7 50
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:AmyC C-terminal domain-like
19c6gzfB_



5.6 16
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase;
PDBTitle: xi class gst from natrialba magadii
20c3bsuF_



5.4 21
PDB header:hydrolase/rna/dna
Chain: F: PDB Molecule:ribonuclease h1;
PDBTitle: hybrid-binding domain of human rnase h1 in complex with 12-2 mer rna/dna
21c6hmsB_



not modelled 5.4 19
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below