Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1940_(ribA1)_2192613_2193674
DateMon Aug 5 13:25:03 BST 2019
Unique Job ID7de09fef8a40ca6d
SequenceMKTTDVRVRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.263 Y:41.571 Z:71.446
Model (left) based on template c4i14B_
Top template information
PDB header:hydrolase, lyase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribba;
PDBTitle: crystal structure of mtb-riba2 (rv1415)
Confidence and coverage
Confidence:100.0% Coverage: 89%
313 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4i14B_



100.0 51
PDB header:hydrolase, lyase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribba;
PDBTitle: crystal structure of mtb-riba2 (rv1415)
2c6mnzB_



100.0 33
PDB header:lyase
Chain: B: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: crystal structure of ribbx, a two domain 3,4-dihydroxy-2-butanone 4-2 phosphate synthase from a. baumannii.
3c4ffjA_



100.0 33
PDB header:lyase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribba;
PDBTitle: the crystal structure of spdhbps from s.pneumoniae
4d1k4ia_



100.0 38
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
5d1g57a_



100.0 38
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
6d1snna_



100.0 30
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
7d1tksa_



100.0 36
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
8c3mioA_



100.0 56
PDB header:lyase
Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00
9c4p6dA_



100.0 38
PDB header:lyase
Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: structure of ribb complexed with po4 ion
10d2bz1a1



100.0 32
Fold:RibA-like
Superfamily:RibA-like
Family:RibA-like
11c4rl4B_



100.0 28
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase-2;
PDBTitle: crystal structure of gtp cyclohydrolase ii from helicobacter pylori2 26695
12d1y0na_



82.4 38
Fold:YehU-like
Superfamily:YehU-like
Family:YehU-like
13d1lh0a_



67.4 12
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
14c5f56A_



63.3 19
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:single-stranded-dna-specific exonuclease;
PDBTitle: structure of recj complexed with dna and ssb-ct
15d1ko7a1



52.8 13
Fold:MurF and HprK N-domain-like
Superfamily:HprK N-terminal domain-like
Family:HPr kinase/phoshatase HprK N-terminal domain
16c4gijC_



49.0 17
PDB header:hydrolase
Chain: C: PDB Molecule:pseudouridine-5'-phosphate glycosidase;
PDBTitle: crystal structure of pseudouridine monophosphate glycosidase complexed2 with sulfate
17d1js3a_



43.6 11
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
18d1vkma_



43.5 18
Fold:Indigoidine synthase A-like
Superfamily:Indigoidine synthase A-like
Family:Indigoidine synthase A-like
19d1oi2a_



42.5 11
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DAK1
20c6eeiA_



38.1 15
PDB header:lyase
Chain: A: PDB Molecule:tyrosine decarboxylase 1;
PDBTitle: crystal structure of arabidopsis thaliana phenylacetaldehyde synthase2 in complex with l-phenylalanine
21d1oeyj_



not modelled 37.6 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
22c3n2lA_



not modelled 35.2 18
PDB header:transferase
Chain: A: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: 2.1 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase (pyre) from vibrio cholerae o1 biovar eltor3 str. n16961
23c1un9B_



not modelled 33.5 20
PDB header:kinase
Chain: B: PDB Molecule:dihydroxyacetone kinase;
PDBTitle: crystal structure of the dihydroxyacetone kinase from c.2 freundii in complex with amp-pnp and mg2+
24c6eeqA_



not modelled 32.2 17
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxyphenylacetaldehyde synthase;
PDBTitle: crystal structure of rhodiola rosea 4-hydroxyphenylacetaldehyde2 synthase
25c4obuG_



not modelled 31.1 13
PDB header:lyase
Chain: G: PDB Molecule:pyridoxal-dependent decarboxylase domain protein;
PDBTitle: ruminococcus gnavus tryptophan decarboxylase rumgna_01526 (apo)
26d1un8a4



not modelled 27.8 20
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DAK1
27c3ct4B_



not modelled 27.4 16
PDB header:transferase
Chain: B: PDB Molecule:pts-dependent dihydroxyacetone kinase, dihydroxyacetone-
PDBTitle: structure of dha-kinase subunit dhak from l. lactis
28c3p04A_



not modelled 26.4 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized bcr;
PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8
29c6eewC_



not modelled 26.3 15
PDB header:lyase
Chain: C: PDB Molecule:aromatic-l-amino-acid decarboxylase;
PDBTitle: crystal structure of catharanthus roseus tryptophan decarboxylase in2 complex with l-tryptophan
30c2zxrA_



not modelled 25.8 23
PDB header:hydrolase
Chain: A: PDB Molecule:single-stranded dna specific exonuclease recj;
PDBTitle: crystal structure of recj in complex with mg2+ from thermus2 thermophilus hb8
31c3zihB_



not modelled 25.3 14
PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein sepf;
PDBTitle: bacillus subtilis sepf, c-terminal domain
32c4ritB_



not modelled 25.1 28
PDB header:lyase
Chain: B: PDB Molecule:pyridoxal-dependent decarboxylase;
PDBTitle: the yellow crystal structure of pyridoxal-dependent decarboxylase from2 sphaerobacter thermophilus dsm 20745
33d1wd5a_



not modelled 23.5 27
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
34d1hrua_



not modelled 22.6 7
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
35c5o5cD_



not modelled 22.4 15
PDB header:lyase
Chain: D: PDB Molecule:putative decarboxylase involved in desferrioxamine
PDBTitle: the crystal structure of dfoj, the desferrioxamine biosynthetic2 pathway lysine decarboxylase from the fire blight disease pathogen3 erwinia amylovora
36c3p04B_



not modelled 22.1 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized bcr;
PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8
37c1xr4B_



not modelled 22.0 24
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase;
PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium]
38c6eemB_



not modelled 21.2 9
PDB header:lyase
Chain: B: PDB Molecule:tyrosine/dopa decarboxylase;
PDBTitle: crystal structure of papaver somniferum tyrosine decarboxylase in2 complex with l-tyrosine
39c2iu6B_



not modelled 21.0 16
PDB header:transferase
Chain: B: PDB Molecule:dihydroxyacetone kinase;
PDBTitle: regulation of the dha operon of lactococcus lactis
40c5j84A_



not modelled 19.3 13
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
41d1jcua_



not modelled 18.5 22
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
42c1ko7B_



not modelled 18.3 13
PDB header:transferase,hydrolase
Chain: B: PDB Molecule:hpr kinase/phosphatase;
PDBTitle: x-ray structure of the hpr kinase/phosphatase from staphylococcus2 xylosus at 1.95 a resolution
43c5g4iA_



not modelled 17.9 10
PDB header:transferase
Chain: A: PDB Molecule:phospholyase;
PDBTitle: plp-dependent phospholyase a1rdf1 from arthrobacter aurescens tc1
44c2mdtA_



not modelled 17.6 24
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
45d1pj5a3



not modelled 17.5 31
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:L-aminoacid/polyamine oxidase
46c2gp4B_



not modelled 17.3 14
PDB header:lyase
Chain: B: PDB Molecule:6-phosphogluconate dehydratase;
PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis
47d2coba1



not modelled 17.2 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Psq domain
48c5yh1A_



not modelled 16.8 16
PDB header:ribosomal protein
Chain: A: PDB Molecule:member of s1p family of ribosomal proteins;
PDBTitle: member of s1p family of ribosomal proteins pf0399 dhh domain
49c4ex8A_



not modelled 16.6 15
PDB header:ligase
Chain: A: PDB Molecule:alna;
PDBTitle: crystal structure of the prealnumycin c-glycosynthase alna
50c1pixB_



not modelled 16.3 19
PDB header:lyase
Chain: B: PDB Molecule:glutaconyl-coa decarboxylase a subunit;
PDBTitle: crystal structure of the carboxyltransferase subunit of the2 bacterial ion pump glutaconyl-coenzyme a decarboxylase
51c3mjdA_



not modelled 16.1 6
PDB header:transferase
Chain: A: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: 1.9 angstrom crystal structure of orotate phosphoribosyltransferase2 (pyre) francisella tularensis.
52c3jszA_



not modelled 15.8 17
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: legionella pneumophila glucosyltransferase lgt1 n293a with udp-glc
53d1knxa1



not modelled 15.3 14
Fold:MurF and HprK N-domain-like
Superfamily:HprK N-terminal domain-like
Family:HPr kinase/phoshatase HprK N-terminal domain
54c3cf4G_



not modelled 15.0 16
PDB header:oxidoreductase
Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
55c2okkA_



not modelled 15.0 9
PDB header:lyase
Chain: A: PDB Molecule:glutamate decarboxylase 2;
PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)
56c2kg4A_



not modelled 14.8 19
PDB header:cell cycle
Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein gadd45
PDBTitle: three-dimensional structure of human gadd45alpha in solution by nmr
57c4e1oC_



not modelled 14.7 11
PDB header:lyase
Chain: C: PDB Molecule:histidine decarboxylase;
PDBTitle: human histidine decarboxylase complex with histidine methyl ester2 (hme)
58d1ohwa_



not modelled 14.4 15
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
59c4efzB_



not modelled 14.3 16
PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: crystal structure of a hypothetical metallo-beta-lactamase from2 burkholderia pseudomallei
60d1pixa3



not modelled 14.2 16
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
61c6jrlA_



not modelled 14.1 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:3,4-dihydroxyphenylacetaldehyde synthase;
PDBTitle: crystal structure of drosophila alpha methyldopa-resistant protein/3,2 4-dihydroxyphenylacetaldehyde synthase
62c5ze4A_



not modelled 13.9 22
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
63d1qh5a_



not modelled 13.8 16
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
64c2k89A_



not modelled 13.5 7
PDB header:protein binding
Chain: A: PDB Molecule:phospholipase a-2-activating protein;
PDBTitle: solution structure of a novel ubiquitin-binding domain from2 human plaa (pfuc, gly76-pro77 cis isomer)
65c5iklD_



not modelled 13.4 10
PDB header:ligase
Chain: D: PDB Molecule:geranyl-coa carboxylase, beta-subunit;
PDBTitle: crystal structure of p. aeruginosa geranyl-coa carboxylase (gcc), beta2 subunit
66d2ji7a1



not modelled 13.3 26
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
67c5h7dI_



not modelled 13.3 17
PDB header:transferase, immune system/metal binding
Chain: I: PDB Molecule:putrescine aminotransferase,immunoglobulin g-binding
PDBTitle: crystal structure of the ygjg-protein a-zpa963-calmodulin complex
68d1k7ja_



not modelled 13.1 11
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
69c6f87C_



not modelled 12.1 16
PDB header:transferase
Chain: C: PDB Molecule:threonylcarbamoyl-amp synthase;
PDBTitle: crystal structure of p. abyssi sua5 complexed with l-threonine and ppi
70d1lj8a4



not modelled 12.0 22
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
71c1on3E_



not modelled 11.9 21
PDB header:transferase
Chain: E: PDB Molecule:methylmalonyl-coa carboxyltransferase 12s
PDBTitle: transcarboxylase 12s crystal structure: hexamer assembly2 and substrate binding to a multienzyme core (with3 methylmalonyl-coenzyme a and methylmalonic acid bound)
72c4rcnA_



not modelled 11.9 14
PDB header:ligase
Chain: A: PDB Molecule:long-chain acyl-coa carboxylase;
PDBTitle: structure and function of a single-chain, multi-domain long-chain2 acyl-coa carboxylase
73d1fvpa_



not modelled 11.8 28
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
74d2hqva1



not modelled 11.8 19
Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:ChuX-like
75c2qmaB_



not modelled 11.5 13
PDB header:transferase
Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4-
PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus
76c2przB_



not modelled 11.5 11
PDB header:transferase
Chain: B: PDB Molecule:orotate phosphoribosyltransferase 1;
PDBTitle: s. cerevisiae orotate phosphoribosyltransferase complexed with omp
77d1k3ra1



not modelled 11.3 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Hypothetical protein MTH1 (MT0001), insert domain
78c4uoxB_



not modelled 11.0 16
PDB header:transferase
Chain: B: PDB Molecule:putrescine aminotransferase;
PDBTitle: crystal structure of ygjg in complex with pyridoxal-5'-phosphate2 and putrescine
79c5vnyA_



not modelled 11.0 27
PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:lethal (2) giant discs 1, isoform b;
PDBTitle: crystal structure of dm14-3 domain of lgd
80c1t3mA_



not modelled 10.8 23
PDB header:hydrolase
Chain: A: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
81c3vthA_



not modelled 10.8 24
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase maturation factor;
PDBTitle: crystal structure of full-length hypf in the phosphate- and2 nucleotide-bound form
82d1ea0a2



not modelled 10.6 16
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
83c2l09A_



not modelled 10.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:asr4154 protein;
PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143
84d1ovma1



not modelled 10.5 19
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
85c2gezE_



not modelled 10.4 16
PDB header:hydrolase
Chain: E: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
86c3k40B_



not modelled 10.4 17
PDB header:lyase
Chain: B: PDB Molecule:aromatic-l-amino-acid decarboxylase;
PDBTitle: crystal structure of drosophila 3,4-dihydroxyphenylalanine2 decarboxylase
87d1xm8a_



not modelled 10.2 14
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
88c2gp4A_



not modelled 10.2 13
PDB header:lyase
Chain: A: PDB Molecule:6-phosphogluconate dehydratase;
PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis
89d1w8ia_



not modelled 10.1 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
90c2wnsB_



not modelled 10.1 8
PDB header:transferase
Chain: B: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: human orotate phosphoribosyltransferase (oprtase) domain of2 uridine 5'-monophosphate synthase (umps) in complex with3 its substrate orotidine 5'-monophosphate (omp)
91d1tifa_



not modelled 10.0 16
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Translation initiation factor IF3, N-terminal domain
Family:Translation initiation factor IF3, N-terminal domain
92c3u54B_



not modelled 9.9 14
PDB header:ligase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide synthase;
PDBTitle: crystal structure (type-1) of saicar synthetase from pyrococcus2 horikoshii ot3
93c4gduB_



not modelled 9.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of sulfate-bound human l-asparaginase protein
94c1e0cA_



not modelled 9.8 21
PDB header:sulfurtransferase
Chain: A: PDB Molecule:sulfurtransferase;
PDBTitle: sulfurtransferase from azotobacter vinelandii
95c3ervA_



not modelled 9.8 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative c39-like peptidase;
PDBTitle: crystal structure of an putative c39-like peptidase from bacillus2 anthracis
96c3nx3A_



not modelled 9.8 14
PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
97c3g8qA_



not modelled 9.7 18
PDB header:rna binding protein
Chain: A: PDB Molecule:predicted rna-binding protein, contains thump
PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea
98c2jisA_



not modelled 9.6 13
PDB header:lyase
Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase;
PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.
99c4nogB_



not modelled 9.5 15
PDB header:transferase
Chain: B: PDB Molecule:putative ornithine aminotransferase, mitochondrial;
PDBTitle: crystal structure of a putative ornithine aminotransferase from2 toxoplasma gondii me49 in complex with pyrodoxal-5'-phosphate

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