Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1942c_(-)_2194651_2194980
DateMon Aug 5 13:25:03 BST 2019
Unique Job ID509c8fe9b18667fb
SequenceVTALPARGEV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.474 Y:34.002 Z:39.987
Model (left) based on template d1ub4a_
Top template information
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
Confidence and coverage
Confidence:100.0% Coverage: 92%
100 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ub4a_



100.0 29
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
2c5xe3B_



100.0 26
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:endoribonuclease mazf4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
3c5wygC_



100.0 29
PDB header:hydrolase
Chain: C: PDB Molecule:probable endoribonuclease mazf7;
PDBTitle: the crystal structure of the apo form of mtb mazf
4c4mzpC_



100.0 24
PDB header:hydrolase
Chain: C: PDB Molecule:mazf mrna interferase;
PDBTitle: mazf from s. aureus crystal form iii, c2221, 2.7 a
5d1ne8a_



100.0 25
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
6c5hk3B_



100.0 27
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endoribonuclease mazf6;
PDBTitle: crystal structure of m. tuberculosis mazf-mt3 t52d-f62d mutant in2 complex with dna
7d1m1fa_



99.9 28
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
8c5hjzA_



99.9 25
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
9c5ccaA_



99.9 34
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease mazf3;
PDBTitle: crystal structure of mtb toxin
10c3jrzA_



95.1 17
PDB header:toxin
Chain: A: PDB Molecule:ccdb;
PDBTitle: ccdbvfi-formii-ph5.6
11d3vuba_



95.1 18
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:CcdB
12c2l89A_



71.8 18
PDB header:protein binding
Chain: A: PDB Molecule:pwwp domain-containing protein 1;
PDBTitle: solution structure of pdp1 pwwp domain reveals its unique binding2 sites for methylated h4k20 and dna
13d1h3za_



71.5 13
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
14c3llrA_



63.3 20
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a;
PDBTitle: crystal structure of the pwwp domain of human dna (cytosine-5-)-2 methyltransferase 3 alpha
15c5ikjA_



50.7 25
PDB header:transcription
Chain: A: PDB Molecule:cryptic loci regulator 2;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
16d2daqa1



41.2 8
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
17c3bxpA_



35.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative lipase/esterase;
PDBTitle: crystal structure of a putative carboxylesterase (lp_2923) from2 lactobacillus plantarum wcfs1 at 1.70 a resolution
18c4ld6A_



23.5 16
PDB header:unknown function
Chain: A: PDB Molecule:pwwp domain-containing protein 2b;
PDBTitle: pwwp domain of human pwwp domain-containing protein 2b
19c4bedA_



17.8 21
PDB header:oxygen transport
Chain: A: PDB Molecule:hemocyanin klh1;
PDBTitle: keyhole limpet hemocyanin (klh): 9a cryoem structure and molecular2 model of the klh1 didecamer reveal the interfaces and intricate3 topology of the 160 functional units
20c4me8A_



16.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:signal peptidase i;
PDBTitle: crystal structure of a signal peptidase i (ef3073) from enterococcus2 faecalis v583 at 2.27 a resolution
21d1rz4a1



not modelled 14.1 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
22c6g25A_



not modelled 13.7 19
PDB header:oncoprotein
Chain: A: PDB Molecule:histone-lysine n-methyltransferase nsd3;
PDBTitle: x-ray structure of nsd3-pwwp1 in complex with compound 4
23d1khca_



not modelled 12.7 20
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
24c4n4hA_



not modelled 12.6 26
PDB header:transcription
Chain: A: PDB Molecule:zinc finger mynd domain-containing protein 11;
PDBTitle: crystal structure of the bromo-pwwp of the mouse zinc finger mynd-type2 containing 11 isoform alpha in complex with histone h3.1k36me3
25c5xb6D_



not modelled 12.2 20
PDB header:hydrolase
Chain: D: PDB Molecule:uncharacterized protein ycjy;
PDBTitle: crystal structure of ycjy from e. coli
26c3pfsA_



not modelled 12.0 11
PDB header:protein binding
Chain: A: PDB Molecule:bromodomain and phd finger-containing protein 3;
PDBTitle: pwwp domain of human bromodomain and phd finger-containing protein 3
27c5vc8B_



not modelled 11.9 11
PDB header:dna binding protein
Chain: B: PDB Molecule:histone-lysine n-methyltransferase nsd2;
PDBTitle: crystal structure of the whsc1 pwwp1 domain
28c2gfuA_



not modelled 11.0 19
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein msh6;
PDBTitle: nmr solution structure of the pwwp domain of mismatch2 repair protein hmsh6
29c3c19A_



not modelled 10.9 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19
30c6bwqB_



not modelled 10.6 21
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
31d2nlua1



not modelled 10.0 8
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
32c2jysA_



not modelled 9.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:protease/reverse transcriptase;
PDBTitle: solution structure of simian foamy virus (mac) protease
33d1bdsa_



not modelled 8.1 50
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
34c1bdsA_



not modelled 8.1 50
PDB header:anti-hypertensive, anti-viral protein
Chain: A: PDB Molecule:bds-i;
PDBTitle: determination of the three-dimensional solution structure of the2 antihypertensive and antiviral protein bds-i from the sea anemone3 anemonia sulcata. a study using nuclear magnetic resonance and hybrid4 distance geometry-dynamical simulated annealing
35c3c6dB_



not modelled 8.1 14
PDB header:virus
Chain: B: PDB Molecule:polyprotein;
PDBTitle: the pseudo-atomic structure of dengue immature virus
36d1b12a_



not modelled 8.0 18
Fold:LexA/Signal peptidase
Superfamily:LexA/Signal peptidase
Family:Type 1 signal peptidase
37c2of3A_



not modelled 7.4 13
PDB header:structural protein, cell cycle
Chain: A: PDB Molecule:zyg-9;
PDBTitle: tog domain structure from c.elegans zyg9
38c3lyiA_



not modelled 6.8 11
PDB header:transcription
Chain: A: PDB Molecule:bromodomain-containing protein 1;
PDBTitle: pwwp domain of human bromodomain-containing protein 1
39d1okja2



not modelled 6.7 50
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
40c4fu6A_



not modelled 6.7 15
PDB header:transcription
Chain: A: PDB Molecule:pc4 and sfrs1-interacting protein;
PDBTitle: crystal structure of the psip1 pwwp domain
41c2x35A_



not modelled 6.6 6
PDB header:transcription
Chain: A: PDB Molecule:peregrin;
PDBTitle: molecular basis of histone h3k36me3 recognition by the pwwp domain of2 brpf1.
42c1uzgA_



not modelled 6.1 14
PDB header:viral protein
Chain: A: PDB Molecule:major envelope protein e;
PDBTitle: crystal structure of the dengue type 3 virus envelope2 protein
43c5v1eA_



not modelled 6.0 39
PDB header:antimicrobial protein
Chain: A: PDB Molecule:guavanin 2;
PDBTitle: suboptimization of a glycine rich peptide allows the combinatorial2 space exploration for designing novel antimicrobial peptides
44c3kopB_



not modelled 5.8 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution
45c3kksB_



not modelled 5.5 9
PDB header:dna binding protein
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii
46c3r9jD_



not modelled 5.5 8
PDB header:cell cycle,hydrolase/cell cycle
Chain: D: PDB Molecule:cell division topological specificity factor;
PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex
47c3d55A_



not modelled 5.5 21
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
48d1n27a_



not modelled 5.4 10
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain

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