Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1943c_(-)_2194977_2195354
DateMon Aug 5 13:25:03 BST 2019
Unique Job IDdd378ce0a41ab4e5
SequenceVKTARLQVTL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.970 Y:34.999 Z:42.566
Model (left) based on template c2k5jB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
Confidence and coverage
Confidence: 45.2% Coverage: 48%
60 residues ( 48% of your sequence) have been modelled with 45.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k5jB_



45.2 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
2c2rt4A_



31.3 70
PDB header:de novo protein
Chain: A: PDB Molecule:af.2a1;
PDBTitle: nmr structure of designed protein, af.2a1, (ensembles)
3c1xb4C_



21.0 21
PDB header:unknown function
Chain: C: PDB Molecule:hypothetical 23.6 kda protein in yuh1-ura8 intergenic
PDBTitle: crystal structure of subunit vps25 of the endosomal trafficking2 complex escrt-ii
4c3dmoD_



20.5 48
PDB header:hydrolase
Chain: D: PDB Molecule:cytidine deaminase;
PDBTitle: 1.6 a crystal structure of cytidine deaminase from burkholderia2 pseudomallei
5c3zbeA_



19.1 39
PDB header:toxin-antitoxin
Chain: A: PDB Molecule:paaa2;
PDBTitle: e. coli o157 pare2-associated antitoxin 2 (paaa2)
6c5tw9D_



16.3 35
PDB header:lipid-binding protein
Chain: D: PDB Molecule:iron uptake system component efeo;
PDBTitle: 1.50 angstrom crystal structure of c-terminal fragment (residues 322-2 384) of iron uptake system component efeo from yersinia pestis.
7c6a7vU_



14.8 26
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
8c5e8jC_



13.2 33
PDB header:translation
Chain: C: PDB Molecule:rnmt-activating mini protein;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase in complex2 with ram
9c2n2sA_



9.9 63
PDB header:signaling protein
Chain: A: PDB Molecule:pheromone ep-1;
PDBTitle: nmr solution structure of the pheromone ep-1 from euplotes petzi
10c3lg8B_



8.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:a-type atp synthase subunit e;
PDBTitle: crystal structure of the c-terminal part of subunit e (e101-206) from2 methanocaldococcus jannaschii of a1ao atp synthase
11c6gw6A_



8.8 32
PDB header:toxin
Chain: A: PDB Molecule:res toxin;
PDBTitle: structure of the pseudomonas putida res-xre toxin-antitoxin complex
12c3bbo3_



8.5 42
PDB header:ribosome
Chain: 3: PDB Molecule:ribosomal protein l33;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
13c3le4A_



8.5 46
PDB header:nuclear protein
Chain: A: PDB Molecule:microprocessor complex subunit dgcr8;
PDBTitle: crystal structure of the dgcr8 dimerization domain
14d1x9ba_



8.3 50
Fold:Protozoan pheromone-like
Superfamily:Hypothetical membrane protein Ta0354, soluble domain
Family:Hypothetical membrane protein Ta0354, soluble domain
15d1dy2a_



8.0 35
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Endostatin
16d1jw2a_



7.3 50
Fold:Open three-helical up-and-down bundle
Superfamily:Hemolysin expression modulating protein HHA
Family:Hemolysin expression modulating protein HHA
17c3qoyA_



6.7 9
PDB header:ribosomal protein
Chain: A: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of ribosomal protein l1 from aquifex aeolicus
18d2qtva2



6.7 75
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:beta-sandwich domain of Sec23/24
Family:beta-sandwich domain of Sec23/24
19c6d0hA_



6.4 23
PDB header:toxin
Chain: A: PDB Molecule:part: cog5654 (res domain) toxin;
PDBTitle: part: prs adp-ribosylating toxin bound to cognate antitoxin pars
20c3vepC_



6.2 42
PDB header:membrane protein/transcription
Chain: C: PDB Molecule:uncharacterized protein rv3413c/mt3522;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
21c3vepX_



not modelled 6.2 42
PDB header:membrane protein/transcription
Chain: X: PDB Molecule:uncharacterized protein rv3413c/mt3522;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
22d1xsqa_



not modelled 6.1 43
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Ureidoglycolate hydrolase AllA
23d1zbsa2



not modelled 5.6 33
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
24d1exqa_



not modelled 5.3 50
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
25d2bdra1



not modelled 5.1 57
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Ureidoglycolate hydrolase AllA

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