Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1944c_(-)_2195351_2195941
DateMon Aug 5 13:25:04 BST 2019
Unique Job ID4bdafc4d6af4277b
SequenceMISDTEDFAH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.904 Y:19.145 Z:16.682
Model (left) based on template c2i9wA_
Top template information
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution
Confidence and coverage
Confidence: 98.1% Coverage: 13%
25 residues ( 13% of your sequence) have been modelled with 98.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2i9wA_
98.1 40
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution
2c1ozbI_
97.9 60
PDB header:protein transport
Chain: I: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of secb complexed with seca c-terminus
3d1ozbi_
97.9 60
Fold:Sec-C motif
Superfamily:Sec-C motif
Family:Sec-C motif
4c1ozbJ_
97.9 60
PDB header:protein transport
Chain: J: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of secb complexed with seca c-terminus
5d1tm6a_
97.8 67
Fold:Sec-C motif
Superfamily:Sec-C motif
Family:Sec-C motif
6c1tm6A_
97.8 67
PDB header:protein transport
Chain: A: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: nmr structure of the free zinc binding c-terminal domain of2 seca
7c1sx1A_
97.6 67
PDB header:protein transport
Chain: A: PDB Molecule:seca;
PDBTitle: solution nmr structure and x-ray absorption analysis of the2 c-terminal zinc-binding domain of the seca atpase
8c1sx0A_
97.5 67
PDB header:protein transport
Chain: A: PDB Molecule:seca;
PDBTitle: solution nmr structure and x-ray absorption analysis of the2 c-terminal zinc-binding domain of the seca atpase
9d2i9wa3
93.5 59
Fold:Sec-C motif
Superfamily:Sec-C motif
Family:Sec-C motif
10d1tpna_
50.1 63
Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
11c2e1xA_
42.7 63
PDB header:viral protein
Chain: A: PDB Molecule:gag-pol polyprotein (pr160gag-pol);
PDBTitle: nmr structure of the hiv-2 nucleocapsid protein
12c2iwjA_
40.9 63
PDB header:transferase
Chain: A: PDB Molecule:gag-pol polyprotein;
PDBTitle: solution structure of the zn complex of hiv-2 ncp(23-49)2 peptide, encompassing protein cchc-linker, distal cchc zn-3 binding motif and c-terminal tail.
13d1f44a1
34.7 41
Fold:SAM domain-like
Superfamily:lambda integrase-like, N-terminal domain
Family:lambda integrase-like, N-terminal domain
14c4e82B_
25.8 55
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of monomeric variant of human alpha-defensin 5, hd52 (glu21eme mutant)
15c4e82A_
25.8 55
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of monomeric variant of human alpha-defensin 5, hd52 (glu21eme mutant)
16d1mkya3
25.2 14
Fold:Alpha-lytic protease prodomain-like
Superfamily:Probable GTPase Der, C-terminal domain
Family:Probable GTPase Der, C-terminal domain
17d2ca5a1
14.4 40
Fold:Long alpha-hairpin
Superfamily:MxiH-like
Family:MxiH-like
18c1zmpD_
13.8 56
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
19c4ng2E_
12.8 42
PDB header:transcription regulator
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of lasr lbd-qsla complex from pseudomonas aeruginosa
20c3i5wA_
11.2 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5 (mutant r13h)
21c3i5wB_
not modelled 11.2 56
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5 (mutant r13h)
22c5ezdB_
not modelled 11.0 38
PDB header:hydrolase
Chain: B: PDB Molecule:kunitz-type protease inhibitor 1;
PDBTitle: crystal structure of a hepatocyte growth factor activator inhibitor-12 (hai-1) fragment covering the pkd-like 'internal' domain and kunitz3 domain 1
23c5n9mA_
not modelled 10.9 24
PDB header:transferase
Chain: A: PDB Molecule:cobyric acid synthase;
PDBTitle: crystal structure of gatd - a glutamine amidotransferase from2 staphylococcus aureus involved in peptidoglycan amidation
24c2lxzA_
not modelled 10.8 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of the antimicrobial peptide human defensin 5
25c1zmpA_
not modelled 10.8 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
26c2mitA_
not modelled 10.8 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of oxidized dimeric form of human defensin 5
27c1zmpB_
not modelled 10.8 56
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
28c2mitB_
not modelled 10.8 56
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: solution structure of oxidized dimeric form of human defensin 5
29c1zmpC_
not modelled 10.8 56
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
30c5ol7A_
not modelled 10.7 29
PDB header:splicing
Chain: A: PDB Molecule:dna-directed dna polymerase,dna-directed dna polymerase;
PDBTitle: crystal structure of an inactivated npu siclopps intein with cfahpq2 extein
31c4rbxA_
not modelled 10.4 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (glu21arg mutant)
32c3n70F_
not modelled 10.4 54
PDB header:transport protein
Chain: F: PDB Molecule:transport activator;
PDBTitle: the crystal structure of the p-loop ntpase domain of the sigma-542 transport activator from e. coli to 2.8a
33c2v6lI_
not modelled 10.3 40
PDB header:protein transport
Chain: I: PDB Molecule:mxih;
PDBTitle: molecular model of a type iii secretion system needle
34c5znhA_
not modelled 10.2 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 2,3-dioxygenase, extradiol protein;
PDBTitle: catechol 2,3-dioxygenase with 4-methyl catechol from diaphorobacter sp2 ds2
35c2vbcA_
not modelled 9.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:dengue 4 ns3 full-length protein;
PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus
36c2leyA_
not modelled 9.4 71
PDB header:antimicrobial protein
Chain: A: PDB Molecule:alpha-defensin 4;
PDBTitle: solution structure of (r7g)-crp4
37c5laaB_
not modelled 9.4 28
PDB header:transferase
Chain: B: PDB Molecule:tetrahydromethanopterin s-methyltransferase subunit a;
PDBTitle: x-ray structure of the methyltransferase subunit a from methanothermus2 fervidus in complex with cobalamin
38d1t3ta2
not modelled 9.1 14
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
39c3d87A_
not modelled 9.1 48
PDB header:cytokine
Chain: A: PDB Molecule:interleukin-23 subunit p19;
PDBTitle: crystal structure of interleukin-23
40c5j0jC_
not modelled 8.9 27
PDB header:de novo protein
Chain: C: PDB Molecule:designed protein 2l6hc3_6;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
41c1vryA_
not modelled 8.8 46
PDB header:membrane protein
Chain: A: PDB Molecule:glycine receptor alpha-1 chain;
PDBTitle: second and third transmembrane domains of the alpha-12 subunit of human glycine receptor
42d2g0ua1
not modelled 8.4 33
Fold:Long alpha-hairpin
Superfamily:MxiH-like
Family:MxiH-like
43d1hyua4
not modelled 8.4 24
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
44c2jowA_
not modelled 8.3 33
PDB header:transport protein
Chain: A: PDB Molecule:protein prgi;
PDBTitle: differences in the electrostatic surfaces of the type iii2 secretion needle proteins
45c2n3pA_
not modelled 8.0 63
PDB header:toxin
Chain: A: PDB Molecule:asteropsin_g;
PDBTitle: solution nmr structure of asteropsin g from marine sponge asteropus
46d1k28d1
not modelled 7.7 33
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
47c4ecnA_
not modelled 7.7 64
PDB header:unknown function
Chain: A: PDB Molecule:leucine-rich repeat protein;
PDBTitle: crystal structure of a leucine-rich repeat protein (bt_0210) from2 bacteroides thetaiotaomicron vpi-5482 at 2.80 a resolution
48c5l8xA_
not modelled 7.6 26
PDB header:transferase
Chain: A: PDB Molecule:tetrahydromethanopterin s-methyltransferase subunit a;
PDBTitle: x-ray structure of apo methanocaldococcus jannaschii methyltransferase2 subunit a at 1.85 angstrom
49c3l4eA_
not modelled 7.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
50c2jrtA_
not modelled 7.5 58
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5
51c4dt1B_
not modelled 7.5 50
PDB header:dna binding protein
Chain: B: PDB Molecule:platinum sensitivity protein 3;
PDBTitle: crystal structure of the psy3-csm2 complex
52d1en2a2
not modelled 7.5 63
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant lectins/antimicrobial peptides
Family:Hevein-like agglutinin (lectin) domain
53c4rbwD_
not modelled 7.4 56
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (thr7arg glu21arg2 mutant)
54c4rbwB_
not modelled 7.4 56
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (thr7arg glu21arg2 mutant)
55c4rbwA_
not modelled 7.4 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (thr7arg glu21arg2 mutant)
56c4rbwC_
not modelled 7.4 56
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (thr7arg glu21arg2 mutant)
57c2cwbA_
not modelled 7.2 18
PDB header:protein binding
Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g
PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
58d1ehda2
not modelled 7.1 63
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant lectins/antimicrobial peptides
Family:Hevein-like agglutinin (lectin) domain
59c4f82A_
not modelled 7.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: x-ray crystal structure of a putative thioredoxin reductase from2 burkholderia cenocepacia
60d1sgva1
not modelled 7.0 23
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
61c3nadB_
not modelled 6.9 27
PDB header:lyase
Chain: B: PDB Molecule:ferulate decarboxylase;
PDBTitle: crystal structure of phenolic acid decarboxylase from bacillus pumilus2 ui-670
62c2fqcA_
not modelled 6.8 53
PDB header:toxin
Chain: A: PDB Molecule:conotoxin pl14a;
PDBTitle: solution structure of conotoxin pl14a
63d2oa4a1
not modelled 6.8 50
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:SPO1678-like
64c3ecjC_
not modelled 6.8 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:protein (homoprotocatechuate 2,3-dioxygenase);
PDBTitle: structure of e323l mutant of homoprotocatechuate 2,3-dioxygenase from2 brevibacterium fuscum at 1.65a resolution
65c4v1aa_
not modelled 6.7 30
PDB header:ribosome
Chain: A: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
66d1v58a1
not modelled 6.7 19
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
67c1t3bA_
not modelled 6.6 28
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
68c1mkyA_
not modelled 6.5 14
PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a switch2 protein containing two gtpase domains
69c4ntxC_
not modelled 6.3 31
PDB header:transport protein/toxin
Chain: C: PDB Molecule:basic phospholipase a2 homolog tx-beta;
PDBTitle: structure of acid-sensing ion channel in complex with snake toxin and2 amiloride
70c2n2hB_
not modelled 6.2 35
PDB header:transcription, protein binding
Chain: B: PDB Molecule:paired amphipathic helix protein sin3a;
PDBTitle: solution structure of sds3 in complex with sin3a
71c3umaC_
not modelled 6.1 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:hypothetical peroxiredoxin protein;
PDBTitle: crystal structure of a hypothetical peroxiredoxin protein frm2 sinorhizobium meliloti
72c2issF_
not modelled 6.0 25
PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
73d1e9ya1
not modelled 5.9 24
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
74d2nv0a1
not modelled 5.9 19
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
75c1zzpA_
not modelled 5.8 18
PDB header:transferase
Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase abl1;
PDBTitle: solution structure of the f-actin binding domain of bcr-2 abl/c-abl
76c1mpyD_
not modelled 5.6 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:catechol 2,3-dioxygenase;
PDBTitle: structure of catechol 2,3-dioxygenase (metapyrocatechase)2 from pseudomonas putida mt-2
77c4incA_
not modelled 5.5 67
PDB header:hydrolase
Chain: A: PDB Molecule:histidine triad nucleotide-binding protein 2,
PDBTitle: human histidine triad nucleotide binding protein 2
78c4e86B_
not modelled 5.5 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
79c4e83A_
not modelled 5.5 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29nle mutant)
80c4e86C_
not modelled 5.5 33
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
81c4e86G_
not modelled 5.5 33
PDB header:antimicrobial protein
Chain: G: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
82c4e86E_
not modelled 5.5 33
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
83c4e86F_
not modelled 5.5 33
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
84c4e86A_
not modelled 5.5 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
85c4e83B_
not modelled 5.5 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29nle mutant)
86c2n8hA_
not modelled 5.4 50
PDB header:toxin
Chain: A: PDB Molecule:conotoxin-muoxi-gviij;
PDBTitle: structural basis for the inhibition of voltage-gated sodium channels2 with conotoxin-muoxi-gviij
87d1owsb_
not modelled 5.3 71
Fold:Phospholipase A2, PLA2
Superfamily:Phospholipase A2, PLA2
Family:Vertebrate phospholipase A2
88c5cuiA_
not modelled 5.3 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
89c5cuiD_
not modelled 5.3 33
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
90c5cuiE_
not modelled 5.3 33
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
91c5cuiC_
not modelled 5.3 33
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
92c5cuiF_
not modelled 5.3 33
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
93c5cuiB_
not modelled 5.3 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
94c4f4mA_
not modelled 5.2 100
PDB header:hydrolase regulator
Chain: A: PDB Molecule:papain peptidoglycan amidase effector tse1;
PDBTitle: structure of the type vi peptidoglycan amidase effector tse1 (c30a)2 from pseudomonas aeruginosa
95c5cujC_
not modelled 5.2 33
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
96c5cumC_
not modelled 5.2 33
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
97c5cumB_
not modelled 5.2 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
98c5cujE_
not modelled 5.2 33
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
99c5cujF_
not modelled 5.2 33
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.

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