Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1945_(-)_2195996_2197360
DateMon Aug 5 13:25:04 BST 2019
Unique Job IDa50cc270a6ea8b1c
SequenceMRSDTREEIS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.095 Y:29.208 Z:34.716
Model (left) based on template c2qgpA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
Confidence and coverage
Confidence: 99.1% Coverage: 15%
67 residues ( 15% of your sequence) have been modelled with 99.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qgpA_



99.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
2c6ghcA_



98.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:5-methylcytosine-specific restriction enzyme a;
PDBTitle: modification dependent ecokmcra restriction endonuclease
3c5mkwA_



98.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:dna annealing helicase and endonuclease zranb3;
PDBTitle: crystal structure of the human zranb3 hnh domain
4c5x1hS_



98.6 15
PDB header:protein transport
Chain: S: PDB Molecule:icmj (dotn);
PDBTitle: structure of legionella pneumophila dotn
5c5h0mA_



98.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: crystal structure of deep-sea thermophilic bacteriophage gve2 hnh2 endonuclease with zinc ion
6c5vgbA_



98.0 23
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of nmecas9 hnh domain bound to anti-crispr acriic1
7c5zmmD_



97.7 20
PDB header:dna binding protein
Chain: D: PDB Molecule:uncharacterized protein mcra;
PDBTitle: structure of the type iv phosphorothioation-dependent restriction2 endonuclease scomcra
8c4ogeA_



97.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease domain protein;
PDBTitle: crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
9c5axwA_



96.8 11
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
10c6ghsA_



95.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:tagi restriction endonuclease;
PDBTitle: modification dependent tagi restriction endonuclease
11d2gykb1



89.7 18
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
12c4cmqB_



88.6 22
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endonuclease cas9/csn1;
PDBTitle: crystal structure of mn-bound s.pyogenes cas9
13d2jb0b1



83.8 19
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
14c4qkoH_



64.5 16
PDB header:antimicrobial protein
Chain: H: PDB Molecule:pyocin-s2;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
15c3plwA_



62.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:recombination enhancement function protein;
PDBTitle: ref protein from p1 bacteriophage
16c5ew5C_



61.5 16
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
17c7ceiB_



59.6 16
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
18c4uhpA_



58.4 23
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
19c5g2xC_



50.9 25
PDB header:transferase
Chain: C: PDB Molecule:group ii intron-encoded protein ltra;
PDBTitle: structure a of group ii intron complexed with its reverse2 transcriptase
20c2pncB_



43.7 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase, liver isozyme;
PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine
21d2dlka1



not modelled 42.9 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
22d1w6ga1



not modelled 38.1 16
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
23c1nbwA_



not modelled 36.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit;
PDBTitle: glycerol dehydratase reactivase
24d1vz0a1



not modelled 36.2 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
25d2ysca1



not modelled 34.3 32
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
26c3mkzU_



not modelled 33.6 20
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
27c3mkyP_



not modelled 32.5 20
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
28d1a1ga1



not modelled 31.0 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
29d1zfda_



not modelled 30.9 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
30d1w2za1



not modelled 29.1 9
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
31c1va1A_



not modelled 29.0 38
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1)
32d1ncsa_



not modelled 28.4 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
33d1a1ia1



not modelled 28.2 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
34d2ho2a1



not modelled 27.3 23
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
35d2glia4



not modelled 27.0 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
36c2b8tA_



not modelled 25.2 17
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: crystal structure of thymidine kinase from u.urealyticum in complex2 with thymidine
37d2oqea1



not modelled 24.9 9
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
38d1d6za1



not modelled 24.7 19
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
39d1ejga_



not modelled 23.4 27
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
40c3higB_



not modelled 23.1 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:amiloride-sensitive amine oxidase;
PDBTitle: crystal structure of human diamine oxidase in complex with the2 inhibitor berenil
41c1pxeA_



not modelled 22.9 45
PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1
42c1ui7A_



not modelled 22.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylethylamine oxidase;
PDBTitle: site-directed mutagenesis of his433 involved in binding of2 copper ion in arthrobacter globiformis amine oxidase
43c2c10D_



not modelled 22.8 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:membrane copper amine oxidase;
PDBTitle: the structure of a truncated, soluble version of semicarbazide-2 sensitive amine oxidase
44c1orxA_



not modelled 22.3 27
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
45d1u86a1



not modelled 22.1 36
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
46d1a1ha1



not modelled 21.9 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
47c1d6uB_



not modelled 21.7 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of e. coli amine oxidase anaerobically reduced with2 beta-phenylethylamine
48c1ekmC_



not modelled 21.1 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure at 2.5 a resolution of zinc-substituted2 copper amine oxidase of hansenula polymorpha expressed in3 escherichia coli
49d1tf3a2



not modelled 21.1 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
50d1f2ig1



not modelled 20.9 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
51d1bhia_



not modelled 20.8 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
52d1jmna_



not modelled 20.7 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
53c3loyB_



not modelled 20.6 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of a copper-containing benzylamine oxidase from2 hansenula polymorpha
54d1ubdc3



not modelled 20.0 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
55d2b8ta2



not modelled 19.9 7
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
56d1aaya1



not modelled 19.5 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
57d1sp2a_



not modelled 19.5 17
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
58d2glia3



not modelled 19.2 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
59c3nbbC_



not modelled 18.5 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxisomal primary amine oxidase;
PDBTitle: crystal structure of mutant y305f expressed in e. coli in the copper2 amine oxidase from hansenula polymorpha
60c1k48A_



not modelled 17.7 27
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
61c1jjzA_



not modelled 17.7 27
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
62c5yixB_



not modelled 17.1 23
PDB header:dna binding protein
Chain: B: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra sigma-interacting domain (sid) in complex2 with domain 2 of sigma 70
63d2dlka2



not modelled 16.6 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
64c3pg6D_



not modelled 16.2 16
PDB header:ligase
Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l;
PDBTitle: the carboxyl terminal domain of human deltex 3-like
65d2glia5



not modelled 15.4 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
66c3ga3A_



not modelled 15.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:interferon-induced helicase c domain-containing
PDBTitle: crystal structure of the c-terminal domain of human mda5
67c1ksiA_



not modelled 14.8 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of a eukaryotic (pea seedling) copper-containing2 amine oxidase at 2.2a resolution
68d1tf6a1



not modelled 14.8 44
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
69d1zela1



not modelled 14.7 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rv2827c N-terminal domain-like
70d1tf3a1



not modelled 14.3 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
71d1nbla_



not modelled 14.1 30
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
72c2f2iA_



not modelled 14.0 27
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
73c2w4rB_



not modelled 13.6 19
PDB header:hydrolase
Chain: B: PDB Molecule:probable atp-dependent rna helicase dhx58;
PDBTitle: crystal structure of the regulatory domain of human lgp2
74c2mn1A_



not modelled 13.6 44
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
75d1n1ua_



not modelled 13.6 20
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
76c1n1uA_



not modelled 13.6 20
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
77d1okha_



not modelled 13.4 30
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
78d1ubdc4



not modelled 12.8 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
79d1pt4a_



not modelled 12.7 27
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
80d1orla_



not modelled 12.7 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
81c4ttnA_



not modelled 12.6 27
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
82c4ttoA_



not modelled 12.6 27
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
83c4ttmA_



not modelled 12.5 27
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
84c2khbA_



not modelled 12.3 27
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
85d1jmpa_



not modelled 12.1 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
86c2f2jA_



not modelled 12.0 27
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1
87c2lurA_



not modelled 11.8 27
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
88d1nb1a_



not modelled 11.6 27
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
89c1nb1A_



not modelled 11.6 27
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
90c2lamA_



not modelled 11.4 20
PDB header:antiviral protein
Chain: A: PDB Molecule:cyclotide cter m;
PDBTitle: three-dimensional structure of the cyclotide cter m
91d1nbwa3



not modelled 11.2 21
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
92c3e4hA_



not modelled 11.0 20
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
93c3cwbQ_



not modelled 10.9 13
PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
94c2jydA_



not modelled 10.9 60
PDB header:metal binding protein
Chain: A: PDB Molecule:f5 domain of myelin transcription factor 1;
PDBTitle: structure of the fifth zinc finger of myelin transcription2 factor 1
95c1kalA_



not modelled 10.8 44
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: elucidation of the primary and three-dimensional structure2 of the uterotonic polypeptide kalata b1
96c6dhrA_



not modelled 10.4 27
PDB header:plant protein
Chain: A: PDB Molecule:rivi3;
PDBTitle: nmr solution structure of rivi3
97c3epvB_



not modelled 10.3 17
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr;
PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms
98d1xx6a2



not modelled 9.6 17
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
99c2k7gA_



not modelled 9.4 20
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: solution structure of varv f

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite