1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		V	D	R	Y	N	D	Q	A	S	G	R	A	L	I	E	I	R	L	C	N	E	R	A	T	P	M	P	I	P	I	G	L	W	M	F	Q	T	K	L	H	V	N	A	G	G	A	D	V	F	L	P	V	C	D	V	L	E	Q	D	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?														?	?	?	?	?	?	?	?	?	?																										?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	E	R	D	E	E	V	R	Q	L	N	L	Q	Y	R	N	R	L	E	Y	A	I	G	R	T	C	S	A	A	W	S	V	N	G	S	R	R	P	S	A	V	W	T	T	W	L	P	V	A	E	T	P	H	T	R	A	R	S	V	E
Secondary structure
SS confidence
Disorder		?	?	?	?																																																				?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.
Sequence		N	A	L	L	S	M	D	S	R	G	G	V	T
Secondary structure
SS confidence
Disorder		?	?	?				?	?	?	?	?	?	?
Disorder confidence

Confidence Key High(9)                     Low (0)

? Disordered ( 30%) Alpha helix ( 10%) Beta strand ( 44%)

Rank Aligned region

PDB 5ukz chain A Region: 84 - 90 Aligned: 7 Modelled: 7 Confidence: 38.2% Identity: 43% PDB header:antimicrobial protein Chain: A: PDB Molecule:bacteriocin pediocin pa-1 m31l; PDBTitle: nmr solution structure of chemically synthesized antilisterial2 pediocin pa-1 m31l analog. Phyre2 PDB 2n4k chain A Region: 84 - 90 Aligned: 7 Modelled: 7 Confidence: 36.0% Identity: 43% PDB header:antimicrobial protein Chain: A: PDB Molecule:enterocin-hf; PDBTitle: solution structure of enterocin hf, an antilisterial bacteriocin2 produced by enterococcus faecium m3k31 Phyre2 PDB 1ry3 chain A Region: 84 - 90 Aligned: 7 Modelled: 7 Confidence: 34.2% Identity: 43% PDB header:antibiotic Chain: A: PDB Molecule:bacteriocin carnobacteriocin b2; PDBTitle: nmr solution structure of the precursor for2 carnobacteriocin b2, an antimicrobial peptide from3 carnobacterium piscicola Phyre2 PDB 3leu chain A Region: 84 - 90 Aligned: 7 Modelled: 7 Confidence: 30.8% Identity: 43% PDB header:antibacterial peptide Chain: A: PDB Molecule:leucocin a; PDBTitle: high resolution 1h nmr study of leucocin a in2 dodecylphosphocholine micelles, 19 structures (1:40 ratio3 of leucocin a:dpc) (0.1% tfa) Phyre2 PDB 1og7 chain A Region: 84 - 90 Aligned: 7 Modelled: 7 Confidence: 28.8% Identity: 29% PDB header:antibiotic Chain: A: PDB Molecule:bacteriocin sakacin p; PDBTitle: three-dimensional structure in lipid micelles of the2 pediocin-like antimicrobial peptide sakacin p. Phyre2 PDB 2egh chain A Region: 38 - 89 Aligned: 42 Modelled: 48 Confidence: 23.1% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin Phyre2 PDB 1kq1 chain A Region: 11 - 21 Aligned: 11 Modelled: 11 Confidence: 18.3% Identity: 9% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Pleiotropic translational regulator Hfq Phyre2 PDB 2n86 chain A Region: 76 - 108 Aligned: 33 Modelled: 33 Confidence: 17.8% Identity: 30% PDB header:toxin Chain: A: PDB Molecule:spiderine-1a; PDBTitle: nmr structure of ottx1a - ick Phyre2 PDB 1u1s chain A domain 1 Region: 10 - 21 Aligned: 12 Modelled: 12 Confidence: 17.0% Identity: 33% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Pleiotropic translational regulator Hfq Phyre2 PDB 4x9z chain B Region: 79 - 87 Aligned: 9 Modelled: 9 Confidence: 16.9% Identity: 44% PDB header:toxin Chain: B: PDB Molecule:alphad-conotoxin gexxa from the venom of conus generalis; PDBTitle: dimeric conotoxin alphad-gexxa Phyre2 PDB 2jcy chain A Region: 38 - 89 Aligned: 42 Modelled: 48 Confidence: 15.6% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium tuberculosis Phyre2 PDB 1kq1 chain W Region: 10 - 21 Aligned: 12 Modelled: 12 Confidence: 15.6% Identity: 8% PDB header:translation Chain: W: PDB Molecule:host factor for q beta; PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq Phyre2 PDB 3qhs chain D Region: 10 - 21 Aligned: 12 Modelled: 12 Confidence: 15.3% Identity: 33% PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli Phyre2 PDB 6gwk chain X Region: 14 - 21 Aligned: 8 Modelled: 8 Confidence: 15.0% Identity: 38% PDB header:rna binding protein Chain: X: PDB Molecule: PDBTitle: the crystal structure of hfq from caulobacter crescentus Phyre2 PDB 1hk9 chain A Region: 14 - 21 Aligned: 8 Modelled: 8 Confidence: 14.7% Identity: 38% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Pleiotropic translational regulator Hfq Phyre2 PDB 4y91 chain L Region: 14 - 21 Aligned: 8 Modelled: 8 Confidence: 14.7% Identity: 25% PDB header:rna binding protein/rna Chain: L: PDB Molecule:rna-binding protein hfq; PDBTitle: crystal structure of a thermotoga maritima hfq homolog Phyre2 PDB 3hsb chain B Region: 14 - 21 Aligned: 8 Modelled: 8 Confidence: 14.4% Identity: 25% PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer Phyre2 PDB 5sze chain A Region: 11 - 21 Aligned: 11 Modelled: 11 Confidence: 12.2% Identity: 27% PDB header:rna-binding protein/rna Chain: A: PDB Molecule:rna-binding protein hfq; PDBTitle: crystal structure of aquifex aeolicus hfq-rna complex at 1.5a Phyre2 PDB 6ewv chain A Region: 14 - 31 Aligned: 18 Modelled: 18 Confidence: 12.0% Identity: 17% PDB header:peptide binding protein Chain: A: PDB Molecule:nrps kj12c-ndd, nrps kj12b-cdd; PDBTitle: solution structure of docking domain complex of rxp nrps: kj12c ndd -2 kj12b cdd Phyre2 PDB 4x9z chain A Region: 83 - 87 Aligned: 5 Modelled: 5 Confidence: 9.2% Identity: 60% PDB header:toxin Chain: A: PDB Molecule:alphad-conotoxin gexxa from the venom of conus generalis; PDBTitle: dimeric conotoxin alphad-gexxa Phyre2 1 c5ukzA_ 2 c2n4kA_ 3 c1ry3A_ 4 c3leuA_ 5 c1og7A_ 6 c2eghA_ 7 d1kq1a_ 8 c2n86A_ 9 d1u1sa1 10 c4x9zB_ 11 c2jcyA_ 12 c1kq1W_ 13 c3qhsD_ 14 c6gwkX_ 15 d1hk9a_ 16 c4y91L_ 17 c3hsbB_ 18 c5szeA_ 19 c6ewvA_ 20 c4x9zA_ 21 22 23 24 25