Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1948c_(-)_2198721_2199071
DateMon Aug 5 13:25:04 BST 2019
Unique Job ID791c469caa151ead
SequenceMTVFGIKPDN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.367 Y:26.913 Z:29.905
Model (left) based on template d2g9ha2
Top template information
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
Confidence and coverage
Confidence: 48.6% Coverage: 25%
29 residues ( 25% of your sequence) have been modelled with 48.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2g9ha2



48.6 34
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
2d1iaka2



31.5 34
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
3d2p24a2



30.7 31
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
4d1es0a2



30.2 34
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
5d1p5dx3



30.0 18
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
6d2b59b2



29.3 30
Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Pre-dockerin domain
7d1uvqa2



29.1 38
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
8d1s9va2



28.5 41
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
9d1fnga2



28.4 28
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
10d1klua2



28.4 34
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
11d1muja2



26.8 34
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
12d1jk8a2



23.9 31
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
13c3d7aB_



22.8 27
PDB header:unknown function
Chain: B: PDB Molecule:upf0201 protein ph1010;
PDBTitle: crystal structure of duf54 family protein ph1010 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
14d2dira1



16.9 19
Fold:THUMP domain
Superfamily:THUMP domain-like
Family:Minimal THUMP
15c2konA_



16.4 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr solution structure of cv_2116 from chromobacterium2 violaceum. northeast structural genomics consortium target3 cvt4(1-82)
16c6hzkB_



14.6 27
PDB header:transferase
Chain: B: PDB Molecule:phosphoribulokinase;
PDBTitle: crystal structure of redox-inhibited phosphoribulokinase from2 synechococcus sp. (strain pcc 6301)
17c1ym0B_



14.5 50
PDB header:hydrolase
Chain: B: PDB Molecule:fibrinotic enzyme component b;
PDBTitle: crystal structure of earthworm fibrinolytic enzyme component b: a2 novel, glycosylated two-chained trypsin
18c3tdqB_



12.5 30
PDB header:cell adhesion
Chain: B: PDB Molecule:pily2 protein;
PDBTitle: crystal structure of a fimbrial biogenesis protein pily22 (pily2_pa4555) from pseudomonas aeruginosa pao1 at 2.10 a resolution
19c3c9gB_



12.3 20
PDB header:nucleotide binding protein
Chain: B: PDB Molecule:upf0200/upf0201 protein af_1395;
PDBTitle: crystal structure of uncharacterized upf0201 protein af_135
20c1vraB_



10.4 25
PDB header:transferase
Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj;
PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
21d2e9xd2



not modelled 10.1 42
Fold:GINS/PriA/YqbF domain
Superfamily:PriA/YqbF domain
Family:SLD5 C-terminal domain-like
22c3jc5A_



not modelled 9.4 28
PDB header:hydrolase
Chain: A: PDB Molecule:dna replication complex gins protein psf1;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
23d1wjka_



not modelled 8.7 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
24c3rgiA_



not modelled 7.5 27
PDB header:transferase
Chain: A: PDB Molecule:disd protein;
PDBTitle: trans-acting transferase from disorazole synthase
25c5d4pA_



not modelled 7.3 12
PDB header:signaling protein
Chain: A: PDB Molecule:putative nitrogen regulatory protein p-ii glnb;
PDBTitle: structure of cpii bound to adp and bicarbonate, from thiomonas2 intermedia k12
26c2hwf4_



not modelled 7.2 31
PDB header:virus
Chain: 4: PDB Molecule:human rhinovirus 1a coat protein (subunit vp4);
PDBTitle: a comparison of the anti-rhinoviral drug binding pocket in hrv14 and2 hrv1a
27c2hwe4_



not modelled 7.2 31
PDB header:virus
Chain: 4: PDB Molecule:human rhinovirus 1a coat protein (subunit vp4);
PDBTitle: a comparison of the anti-rhinoviral drug binding pocket in hrv14 and2 hrv1a
28c2hwd4_



not modelled 7.2 31
PDB header:virus
Chain: 4: PDB Molecule:human rhinovirus 1a coat protein (subunit vp4);
PDBTitle: a comparison of the anti-rhinoviral drug binding pocket in hrv14 and2 hrv1a
29c1r1a4_



not modelled 7.2 31
PDB header:virus
Chain: 4: PDB Molecule:human rhinovirus 1a coat protein (subunit vp4);
PDBTitle: crystal structure of human rhinovirus serotype 1a (hrv1a)
30c4u39J_



not modelled 7.0 38
PDB header:cell cycle
Chain: J: PDB Molecule:cell division factor;
PDBTitle: crystal structure of ftsz:mciz complex from bacillus subtilis
31c4u39L_



not modelled 6.8 38
PDB header:cell cycle
Chain: L: PDB Molecule:cell division factor;
PDBTitle: crystal structure of ftsz:mciz complex from bacillus subtilis
32c2gqcA_



not modelled 6.7 30
PDB header:hydrolase
Chain: A: PDB Molecule:rhomboid intramembrane protease;
PDBTitle: solution structure of the n-terminal domain of rhomboid intramembrane2 protease from p. aeruginosa
33d3cx5c1



not modelled 6.7 43
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
34c2wskA_



not modelled 6.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
35c2jrwA_



not modelled 6.4 80
PDB header:immune system
Chain: A: PDB Molecule:cyclic extended pep.1;
PDBTitle: solution structure of cyclic extended pep1(cyc.ext.pep.1)2 for autoimmune myasthenia gravis
36c2l6tA_



not modelled 6.3 50
PDB header:antiviral protein
Chain: A: PDB Molecule:vir-576;
PDBTitle: efficacy of an hiv-1 entry inhibitor targeting the gp41 fusion peptide
37c2l6sA_



not modelled 6.3 50
PDB header:antiviral protein
Chain: A: PDB Molecule:vir-576;
PDBTitle: efficacy of an hiv-1 entry inhibitor targeting the gp41 fusion peptide
38d2qn6b1



not modelled 6.3 15
Fold:Ferredoxin-like
Superfamily:eIF-2-alpha, C-terminal domain
Family:eIF-2-alpha, C-terminal domain
39d1ppjc1



not modelled 6.2 71
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
40c2vopA_



not modelled 6.0 45
PDB header:rna-binding protein
Chain: A: PDB Molecule:lupus la protein;
PDBTitle: crystal structure of n-terminal domains of human la protein2 complexed with rna oligomer auuuu
41d1x64a2



not modelled 5.7 14
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
42d1hvxa1



not modelled 5.7 18
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
43c3c04A_



not modelled 5.7 18
PDB header:isomerase
Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase;
PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa
44c1bf2A_



not modelled 5.5 31
PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase
45d1zh5a1



not modelled 5.5 45
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:La domain
46c3it4B_



not modelled 5.4 23
PDB header:transferase
Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj
PDBTitle: the crystal structure of ornithine acetyltransferase from2 mycobacterium tuberculosis (rv1653) at 1.7 a
47c1unyA_



not modelled 5.4 64
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles
48d1e43a1



not modelled 5.4 24
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
49d1x62a1



not modelled 5.3 43
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
50d1tzpa_



not modelled 5.2 32
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:MepA-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite