Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1949c_(-)_2199082_2200038
DateMon Aug 5 13:25:04 BST 2019
Unique Job ID945d94d52e0f2574
SequenceLRQRTGADLQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.064 Y:35.333 Z:26.464
Model (left) based on template c4evxA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative phage endolysin;
PDBTitle: crystal structure of putative phage endolysin from s. enterica
Confidence and coverage
Confidence: 53.7% Coverage: 12%
38 residues ( 12% of your sequence) have been modelled with 53.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4evxA_
53.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative phage endolysin;
PDBTitle: crystal structure of putative phage endolysin from s. enterica
2c2lxeA_
42.6 50
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase suvr4;
PDBTitle: s4wyild
3d1yrra2
29.1 19
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
4c3o6xC_
28.0 27
PDB header:ligase
Chain: C: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis
5c6iuhC_
27.5 35
PDB header:protein binding
Chain: C: PDB Molecule:liprin-alpha-2;
PDBTitle: crystal structure of git1 pbd domain in complex with liprin-alpha2
6c4wj2A_
25.0 18
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
7c4r1dB_
24.6 18
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of tle4-tli4 complex
8c3gr1A_
21.7 30
PDB header:membrane protein
Chain: A: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-392)
9c6i9fA_
20.5 20
PDB header:lipid binding protein
Chain: A: PDB Molecule:fatty acid-binding protein homolog;
PDBTitle: solution structure of as-p18 reveals that nematode fatty acid binding2 proteins exhibit unusual structural features
10c1wy1B_
19.4 22
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein ph0671;
PDBTitle: crystal structure of the ph0671 protein from pyrococcus horikoshii ot3
11d1u5wa1
17.7 31
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
12c4evuB_
15.9 33
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative periplasmic protein ydgh;
PDBTitle: crystal structure of c-terminal domain of putative periplasmic protein2 ydgh from s. enterica
13d1eeja2
15.8 31
Fold:Cystatin-like
Superfamily:DsbC/DsbG N-terminal domain-like
Family:DsbC/DsbG N-terminal domain-like
14c6et6A_
15.7 19
PDB header:antimicrobial protein
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of muramidase from acinetobacter baumannii ab 5075uw2 prophage
15d1x6ma_
15.5 43
Fold:Mss4-like
Superfamily:Mss4-like
Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa
16c1htmB_
15.1 33
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: structure of influenza haemagglutinin at the ph of membrane2 fusion
17d1v9pa3
14.7 23
Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
18d1kbhb_
13.7 31
Fold:Nuclear receptor coactivator interlocking domain
Superfamily:Nuclear receptor coactivator interlocking domain
Family:Nuclear receptor coactivator interlocking domain
19d1t3ba2
12.8 19
Fold:Cystatin-like
Superfamily:DsbC/DsbG N-terminal domain-like
Family:DsbC/DsbG N-terminal domain-like
20d1ivsa1
12.3 19
Fold:Long alpha-hairpin
Superfamily:tRNA-binding arm
Family:Valyl-tRNA synthetase (ValRS) C-terminal domain
21d1dgsa3
not modelled 11.9 23
Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
22c4kwyB_
not modelled 11.9 16
PDB header:transport protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative lipoprotein (cc_3750) from caulobacter2 crescentus cb15 at 2.40 a resolution
23c2jq3A_
not modelled 11.8 50
PDB header:lipid binding protein
Chain: A: PDB Molecule:apolipoprotein c-iii;
PDBTitle: structure and dynamics of human apolipoprotein c-iii
24d1ta8a_
not modelled 11.8 13
Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
25d1u14a_
not modelled 11.3 31
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
26c2vo9C_
not modelled 11.2 41
PDB header:hydrolase
Chain: C: PDB Molecule:l-alanyl-d-glutamate peptidase;
PDBTitle: crystal structure of the enzymatically active domain of the listeria2 monocytogenes bacteriophage 500 endolysin ply500
27c2iyjA_
not modelled 10.5 31
PDB header:isomerase
Chain: A: PDB Molecule:thiol disulfide interchange protein dsbc;
PDBTitle: crystal structure of the n-terminal dimer domain of e.coli2 dsbc
28d176la_
not modelled 10.0 21
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
29d1xjua_
not modelled 10.0 18
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
30c3m5gD_
not modelled 9.6 33
PDB header:viral protein
Chain: D: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of a h7 influenza virus hemagglutinin
31c6b29B_
not modelled 9.5 36
PDB header:protein binding
Chain: B: PDB Molecule:sh3 and cysteine-rich domain-containing protein 3;
PDBTitle: crystal structure of the second sh3 domain of stac3 (309-364)
32d1u7ka_
not modelled 9.3 67
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
33d2gcxa1
not modelled 9.0 30
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
34c5d6sB_
not modelled 8.9 36
PDB header:oxidoreductase
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: structure of epoxyqueuosine reductase from streptococcus thermophilus.
35c5d0bB_
not modelled 8.8 24
PDB header:oxidoreductase/rna
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: crystal structure of epoxyqueuosine reductase with a trna-tyr2 epoxyqueuosine-modified trna stem loop
36d1zwya1
not modelled 8.7 31
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
37d1cexa_
not modelled 8.6 21
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Cutinase-like
38c2mulA_
not modelled 8.6 38
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase huwe1;
PDBTitle: solution structure of the ubm1 domain of human huwe1/arf-bp1
39c1w8xM_
not modelled 8.6 32
PDB header:virus
Chain: M: PDB Molecule:protein p30;
PDBTitle: structural analysis of prd1
40c3gr0D_
not modelled 8.4 36
PDB header:membrane protein
Chain: D: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362)
41c4fypA_
not modelled 8.4 67
PDB header:plant protein
Chain: A: PDB Molecule:vegetative storage protein 1;
PDBTitle: crystal structure of plant vegetative storage protein
42c4h32L_
not modelled 8.3 42
PDB header:viral protein
Chain: L: PDB Molecule:hemagglutinin;
PDBTitle: the crystal structure of the hemagglutinin h17 derived the bat2 influenza a virus
43c1ru7B_
not modelled 8.3 50
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin;
PDBTitle: 1934 human h1 hemagglutinin
44d1un7a2
not modelled 8.1 21
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
45c1jsdB_
not modelled 8.1 50
PDB header:viral protein
Chain: B: PDB Molecule:haemagglutinin (ha2 chain);
PDBTitle: crystal structure of swine h9 haemagglutinin
46d2g84a1
not modelled 8.0 36
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
47c3dlmA_
not modelled 7.9 32
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
48d1cq3a_
not modelled 7.9 26
Fold:Soluble secreted chemokine inhibitor, VCCI
Superfamily:Soluble secreted chemokine inhibitor, VCCI
Family:Soluble secreted chemokine inhibitor, VCCI
49c1mqlB_
not modelled 7.7 33
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: bha of ukr/63
50c1hgeD_
not modelled 7.7 33
PDB header:viral protein
Chain: D: PDB Molecule:hemagglutinin, (g135r), ha1 chain;
PDBTitle: binding of influenza virus hemagglutinin to analogs of its cell-2 surface receptor, sialic acid: analysis by proton nuclear magnetic3 resonance spectroscopy and x-ray crystallography
51c3bt6B_
not modelled 7.6 25
PDB header:viral protein
Chain: B: PDB Molecule:influenza b hemagglutinin (ha);
PDBTitle: crystal structure of influenza b virus hemagglutinin
52c5t0gV_
not modelled 7.6 30
PDB header:hydrolase
Chain: V: PDB Molecule:26s proteasome non-atpase regulatory subunit 3;
PDBTitle: structural basis for dynamic regulation of the human 26s proteasome
53c1tfzA_
not modelled 7.6 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase;
PDBTitle: structural basis for herbicidal inhibitor selectivity revealed by2 comparison of crystal structures of plant and mammalian 4-3 hydroxyphenylpyruvate dioxygenases
54c6hwwA_
not modelled 7.6 67
PDB header:viral protein
Chain: A: PDB Molecule:putative gag polyprotein;
PDBTitle: immature mlv capsid hexamer structure in intact virus particles
55c1dgsB_
not modelled 7.5 23
PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
56c2qnlA_
not modelled 7.4 25
PDB header:signaling protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative dna damage-inducible protein2 (chu_0679) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution
57c2bfuL_
not modelled 7.4 33
PDB header:virus
Chain: L: PDB Molecule:cowpea mosaic virus, large (l) subunit;
PDBTitle: x-ray structure of cpmv top component
58c3nh8A_
not modelled 7.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:aspartoacylase-2;
PDBTitle: crystal structure of murine aminoacylase 3 in complex with n-acetyl-s-2 1,2-dichlorovinyl-l-cysteine
59c6hwyB_
not modelled 7.2 67
PDB header:viral protein
Chain: B: PDB Molecule:putative gag polyprotein;
PDBTitle: mature mlv capsid pentamer structure in intact virus particles
60c3gbsA_
not modelled 7.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:cutinase 1;
PDBTitle: crystal structure of aspergillus oryzae cutinase
61c1zauA_
not modelled 7.2 17
PDB header:ligase
Chain: A: PDB Molecule:dna ligase;
PDBTitle: adenylation domain of nad+ dependent dna ligase from m.tuberculosis
62c1v9pB_
not modelled 7.1 23
PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase
63d1dl6a_
not modelled 7.0 55
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
64c3hdfA_
not modelled 7.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of truncated endolysin r21 from phage 21
65c6e1rA_
not modelled 7.0 43
PDB header:hydrolase
Chain: A: PDB Molecule:tailspike protein;
PDBTitle: crystal structure of the acinetobacter phage vb_apip_p1 tailspike2 protein
66d2gycf2
not modelled 6.9 26
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
67c6gvwD_
not modelled 6.9 31
PDB header:signaling protein
Chain: D: PDB Molecule:brisc and brca1-a complex member 1;
PDBTitle: crystal structure of the brca1-a complex
68d1q08a_
not modelled 6.7 11
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
69d1rutx4
not modelled 6.7 43
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
70c2wrhI_
not modelled 6.7 42
PDB header:viral protein
Chain: I: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: structure of h1 duck albert hemagglutinin with human2 receptor
71c2anxB_
not modelled 6.6 23
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme;
PDBTitle: crystal structure of bacteriophage p22 lysozyme mutant l87m
72c2mxzA_
not modelled 6.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:l-alanyl-d-glutamate peptidase;
PDBTitle: bacteriophage t5 l-alanoyl-d-glutamate peptidase comlpex with zn2+2 (endo t5-zn2+)
73c5nv4A_
not modelled 6.5 32
PDB header:transferase
Chain: A: PDB Molecule:udp-glucose-glycoprotein glucosyltransferase-like protein;
PDBTitle: udp-glucose glycoprotein glucosyltransferase from chaetomium2 thermophilum double mutant d611c:g1050c
74d1xjta_
not modelled 6.4 21
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
75d1pfta_
not modelled 6.4 63
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
76c2qv6D_
not modelled 6.3 21
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase iii;
PDBTitle: gtp cyclohydrolase iii from m. jannaschii (mj0145)2 complexed with gtp and metal ions
77d2vo9a1
not modelled 6.0 41
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:VanY-like
78d1ny722
not modelled 6.0 71
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
79c4idmA_
not modelled 5.9 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:delta-1-pyrroline-5-carboxylate dehydrogenase;
PDBTitle: crystal structure of the delta-pyrroline-5-carboxylate dehydrogenase2 from mycobacterium tuberculosis
80d1pgl22
not modelled 5.9 86
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
81d1p5ca_
not modelled 5.9 15
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
82c2fkkA_
not modelled 5.8 22
PDB header:viral protein
Chain: A: PDB Molecule:baseplate structural protein gp10;
PDBTitle: crystal structure of the c-terminal domain of the bacteriophage t42 gene product 10
83c3qd7X_
not modelled 5.8 6
PDB header:hydrolase
Chain: X: PDB Molecule:uncharacterized protein ydal;
PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli
84d1ni3a2
not modelled 5.8 25
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:G domain-linked domain
85d1ywsa1
not modelled 5.7 24
Fold:Rubredoxin-like
Superfamily:CSL zinc finger
Family:CSL zinc finger
86d1wgea1
not modelled 5.7 24
Fold:Rubredoxin-like
Superfamily:CSL zinc finger
Family:CSL zinc finger
87d1sp9a_
not modelled 5.6 16
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
88c5x88A_
not modelled 5.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:cutinase;
PDBTitle: a crystal structure of cutinases from malbranchea cinnamomea
89c2jr7A_
not modelled 5.6 24
PDB header:metal binding protein
Chain: A: PDB Molecule:dph3 homolog;
PDBTitle: solution structure of human desr1
90c5opzB_
not modelled 5.6 39
PDB header:hydrolase
Chain: B: PDB Molecule:chix;
PDBTitle: crystal structure of serratia marcescens l-ala d-glu endopeptidase2 chix
91d1nt2b_
not modelled 5.6 15
Fold:Nop domain
Superfamily:Nop domain
Family:Nop domain
92c4fiuC_
not modelled 5.5 50
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin;
PDBTitle: the structure of hemagglutinin of h16 subtype influenza virus with2 v327g mutation
93c4v1ao_
not modelled 5.5 24
PDB header:ribosome
Chain: O: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
94c1tr8A_
not modelled 5.5 20
PDB header:chaperone
Chain: A: PDB Molecule:conserved protein (mth177);
PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac)
95d2pxrc1
not modelled 5.4 29
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
96d1jbsa_
not modelled 5.4 25
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Ribotoxin
97c6c8rA_
not modelled 5.3 20
PDB header:transferase
Chain: A: PDB Molecule:loganic acid o-methyltransferase;
PDBTitle: loganic acid o-methyltransferase complexed with sah and loganic acid
98c2lvuA_
not modelled 5.2 71
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 10
99c3dd5F_
not modelled 5.1 21
PDB header:hydrolase
Chain: F: PDB Molecule:cutinase;
PDBTitle: glomerella cingulata e600-cutinase complex

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