Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1953_(-)_2200945_2201256
DateMon Aug 5 13:25:05 BST 2019
Unique Job ID61cb4f5ee23a7636
SequenceVTYVLDTNVV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.632 Y:32.565 Z:32.583
Model (left) based on template d2h1ca1
Top template information
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
Confidence and coverage
Confidence: 99.5% Coverage: 94%
97 residues ( 94% of your sequence) have been modelled with 99.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2h1ca1



99.5 27
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
2c6nklA_



99.3 14
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
3c3zvkC_



99.1 14
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
4c3h87B_



99.1 12
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
5c3tndC_



99.1 15
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
6c5sv2A_



99.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
7c5l6mC_



98.9 23
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
8d1v96a1



98.8 7
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
9c4chgC_



98.8 16
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
10c3dboB_



98.7 24
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
11d1y82a1



98.4 5
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
12c6a7vG_



98.3 15
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
13c4xgrG_



97.9 11
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
14d2fe1a1



97.5 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
15c2fe1A_



97.5 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
16c5x3tD_



97.1 14
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
17c5wzfB_



95.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
18c2hwwC_



93.8 21
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
19c1v8pK_



88.1 14
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
20d1v8pa_



88.0 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
21c3i8oA_



not modelled 83.3 16
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
22c2hwyB_



not modelled 80.4 13
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
23c3ix7A_



not modelled 80.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
24d1o4wa_



not modelled 77.6 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25c5jpqd_



not modelled 52.0 17
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
26c4mj7B_



not modelled 41.6 5
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
27c5yz4A_



not modelled 37.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
28d2ckaa1



not modelled 30.1 15
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
29c2ckaA_



not modelled 30.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
30c4gwpC_



not modelled 17.5 21
PDB header:transcription
Chain: C: PDB Molecule:mediator of rna polymerase ii transcription subunit 8;
PDBTitle: structure of the mediator head module from s. cerevisiae
31c2lcqA_



not modelled 17.4 28
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
32c6hsdB_



not modelled 14.3 14
PDB header:transcription
Chain: B: PDB Molecule:rrf2 family transcriptional regulator;
PDBTitle: crystal structure of the oxidized form of the transcription regulator2 rsrr
33c2dmnA_



not modelled 14.2 21
PDB header:transcription
Chain: A: PDB Molecule:homeobox protein tgif2lx;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx
34d2dl6a1



not modelled 13.1 17
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
35c2mdvB_



not modelled 12.0 31
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
36c6dlhA_



not modelled 9.1 25
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,4-endofucoidanase;
PDBTitle: endo-fucoidan hydrolase mffcna4 from glycoside hydrolase family 107
37c2lk2A_



not modelled 9.0 16
PDB header:transcription
Chain: A: PDB Molecule:homeobox protein tgif1;
PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b
38c6bmtB_



not modelled 8.2 21
PDB header:oxidoreductase/inhibitor
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a recombinant form of human myeloperoxidase bound2 to an inhibitor from staphylococcus delphini
39d2r5yb1



not modelled 7.7 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
40d1lfup_



not modelled 7.4 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
41d1x2na1



not modelled 6.6 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
42c3btnA_



not modelled 6.1 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:antizyme inhibitor 1;
PDBTitle: crystal structure of antizyme inhibitor, an ornithine2 decarboxylase homologous protein
43c5j5vC_



not modelled 6.0 35
PDB header:toxin
Chain: C: PDB Molecule:immunity protein cdii;
PDBTitle: cdia-ct from uropathogenic escherichia coli in complex with cognate2 immunity protein and cysk
44d1yrnb_



not modelled 5.7 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
45c5houA_



not modelled 5.7 14
PDB header:transcription
Chain: A: PDB Molecule:cellular tumor antigen p53,creb-binding protein fusion
PDBTitle: solution structure of p53tad-taz1
46d2v0fa1



not modelled 5.6 29
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
47c2lndA_



not modelled 5.4 44
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein, pfk fold;
PDBTitle: solution nmr structure of de novo designed protein, pfk fold,2 northeast structural genomics consortium target or134

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