Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1954A_(RVBD1954A)_2201284_2201586
DateMon Aug 5 13:25:05 BST 2019
Unique Job ID2cfd192050eb7e86
SequenceMARGRVVCIG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.263 Y:20.963 Z:19.992
Model (left) based on template c2m0oA_
Top template information
PDB header:peptide binding protein
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: the solution structure of human phf1 in complex with h3k36me3
Confidence and coverage
Confidence: 30.5% Coverage: 22%
22 residues ( 22% of your sequence) have been modelled with 30.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2m0oA_
30.5 41
PDB header:peptide binding protein
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: the solution structure of human phf1 in complex with h3k36me3
2d1iu4a_
28.3 38
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Microbial transglutaminase
3c3iu0A_
27.1 38
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: structural basis for zymogen activation and substrate binding of2 transglutaminase from streptomyces mobaraense
4c1rfoC_
25.7 40
PDB header:viral protein
Chain: C: PDB Molecule:whisker antigen control protein;
PDBTitle: trimeric foldon of the t4 phagehead fibritin
5c3co5B_
24.7 28
PDB header:transcription regulator
Chain: B: PDB Molecule:putative two-component system transcriptional response
PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae
6c6g49A_
24.3 33
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: crystal structure of the periplasmic domain of tgpa from pseudomonas2 aeruginosa
7c2lp7C_
19.4 40
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of gp41-m-mat, a membrane associated mper trimer from hiv-12 gp41.
8c6dkuA_
18.9 40
PDB header:unknown function
Chain: A: PDB Molecule:vp35;
PDBTitle: crystal structure of myotis vp35 mutant of interferon inhibitory2 domain
9c3isrB_
18.6 29
PDB header:hydrolase
Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease;
PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a
10c4gh9A_
16.9 40
PDB header:viral protein,rna binding protein
Chain: A: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of marburg virus vp35 rna binding domain
11c4xhiB_
15.7 33
PDB header:transcription
Chain: B: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of native thosea asigna virus rna-dependent rna2 polymerase (rdrp) at 2.15 angstrom resolution
12c2m5tA_
15.5 50
PDB header:viral protein
Chain: A: PDB Molecule:human rhinovirus 2a proteinase;
PDBTitle: solution structure of the 2a proteinase from a common cold agent,2 human rhinovirus rv-c02, strain w12
13c6d9oA_
15.2 70
PDB header:toxin
Chain: A: PDB Molecule:potassium channel toxin alpha-ktx 5.4;
PDBTitle: nmr solution structure of tamapin, mutant e25a
14c1avyA_
14.6 40
PDB header:coiled coil
Chain: A: PDB Molecule:fibritin;
PDBTitle: fibritin deletion mutant m (bacteriophage t4)
15c3fkeB_
14.4 53
PDB header:rna binding protein
Chain: B: PDB Molecule:polymerase cofactor vp35;
PDBTitle: structure of the ebola vp35 interferon inhibitory domain
16c3ks8D_
14.0 47
PDB header:viral protein/rna
Chain: D: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of reston ebolavirus vp35 rna binding domain in2 complex with 18bp dsrna
17c1ox3A_
13.8 40
PDB header:chaperone
Chain: A: PDB Molecule:fibritin;
PDBTitle: crystal structure of mini-fibritin
18c1z8rA_
13.6 60
PDB header:hydrolase
Chain: A: PDB Molecule:coxsackievirus b4 polyprotein;
PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51)
19c4p78D_
13.5 14
PDB header:toxin
Chain: D: PDB Molecule:hica3 toxin;
PDBTitle: hica3 and hicb3 toxin-antitoxin complex
20c3rp7A_
13.4 56
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavoprotein monooxygenase;
PDBTitle: crystal structure of klebsiella pneumoniae hpxo complexed with fad and2 uric acid
21c1v1hB_
not modelled 13.3 39
PDB header:adenovirus
Chain: B: PDB Molecule:fibritin, fiber protein;
PDBTitle: adenovirus fibre shaft sequence n-terminally fused to the2 bacteriophage t4 fibritin foldon trimerisation motif with a short3 linker
22c5fn0C_
not modelled 12.9 38
PDB header:oxidoreductase
Chain: C: PDB Molecule:kynurenine 3-monooxygenase;
PDBTitle: crystal structure of pseudomonas fluorescens kynurenine-3-2 monooxygenase (kmo) in complex with gsk180
23c3j21B_
not modelled 12.5 19
PDB header:ribosome
Chain: B: PDB Molecule:50s ribosomal protein l2p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
24d2hrva_
not modelled 12.4 40
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral cysteine protease of trypsin fold
25c3c4aA_
not modelled 12.0 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable tryptophan hydroxylase viod;
PDBTitle: crystal structure of viod hydroxylase in complex with fad from2 chromobacterium violaceum. northeast structural genomics consortium3 target cvr158
26c2l1sA_
not modelled 11.8 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yohn;
PDBTitle: yp_001336205.1
27c2dkhA_
not modelled 11.6 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of 3-hydroxybenzoate hydroxylase from comamonas2 testosteroni, in complex with the substrate
28c3gmbB_
not modelled 10.1 39
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase;
PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase
29c1vw4d_
not modelled 10.0 86
PDB header:ribosome
Chain: D: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
30c2qa1A_
not modelled 10.0 39
PDB header:oxidoreductase
Chain: A: PDB Molecule:polyketide oxygenase pgae;
PDBTitle: crystal structure of pgae, an aromatic hydroxylase involved in2 angucycline biosynthesis
31c1pn0A_
not modelled 9.9 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenol 2-monooxygenase;
PDBTitle: phenol hydroxylase from trichosporon cutaneum
32d1pn0a1
not modelled 9.9 38
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
33c6h3jA_
not modelled 9.5 32
PDB header:protein transport
Chain: A: PDB Molecule:protein involved in gliding motility spra;
PDBTitle: structural snapshots of the type 9 protein translocon plug-complex
34d1m1ha1
not modelled 9.3 64
Fold:N-utilization substance G protein NusG, insert domain
Superfamily:N-utilization substance G protein NusG, insert domain
Family:N-utilization substance G protein NusG, insert domain
35c2a56A_
not modelled 9.2 27
PDB header:luminescent protein
Chain: A: PDB Molecule:gfp-like non-fluorescent chromoprotein fp595 chain 1;
PDBTitle: fluorescent protein asfp595, a143s, on-state, 5min irradiation
36c1phhA_
not modelled 9.2 39
PDB header:oxidoreductase
Chain: A: PDB Molecule:p-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of p-hydroxybenzoate hydroxylase complexed with its2 reaction product 3,4-dihydroxybenzoate
37d1jmab2
not modelled 9.0 55
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
38c3kzsD_
not modelled 8.8 21
PDB header:hydrolase
Chain: D: PDB Molecule:glycosyl hydrolase family 5;
PDBTitle: crystal structure of glycosyl hydrolase family 5 (np_809925.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution
39c6h3iA_
not modelled 8.7 32
PDB header:protein transport
Chain: A: PDB Molecule:protein involved in gliding motility spra;
PDBTitle: structural snapshots of the type 9 protein translocon
40c3lf4A_
not modelled 8.7 33
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent timer precursor blue102;
PDBTitle: crystal structure of fluorescent timer precursor blue102
41c4c26A_
not modelled 8.6 29
PDB header:toxin
Chain: A: PDB Molecule:hica;
PDBTitle: solution nmr structure of the hica toxin from burkholderia2 pseudomallei
42c2e6iA_
not modelled 8.5 32
PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase itk/tsk;
PDBTitle: solution structure of the btk motif of tyrosine-protein2 kinase itk from human
43c2l62A_
not modelled 8.4 58
PDB header:metal binding protein
Chain: A: PDB Molecule:ec protein i/ii;
PDBTitle: protein and metal cluster structure of the wheat metallothionein2 domain g-ec-1. the second part of the puzzle.
44c4yl5A_
not modelled 8.0 40
PDB header:transferase
Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase;
PDBTitle: structure of a putative phosphomethylpyrimidine kinase from2 acinetobacter baumannii
45c3es4B_
not modelled 7.8 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold;
PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution
46c3e1tA_
not modelled 7.7 28
PDB header:flavoprotein
Chain: A: PDB Molecule:halogenase;
PDBTitle: structure and action of the myxobacterial chondrochloren2 halogenase cndh, a new variant of fad-dependent halogenases
47c4k22A_
not modelled 7.7 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein visc;
PDBTitle: structure of the c-terminal truncated form of e.coli c5-hydroxylase2 ubii involved in ubiquinone (q8) biosynthesis
48c2gw4C_
not modelled 7.6 40
PDB header:luminescent protein
Chain: C: PDB Molecule:kaede;
PDBTitle: crystal structure of stony coral fluorescent protein kaede, red form
49c2m2rA_
not modelled 7.5 75
PDB header:unknown function
Chain: A: PDB Molecule:inhibitor cystine knot peptide mch-2;
PDBTitle: solution structure of mch-2: a novel inhibitor cystine knot peptide2 from momordica charantia
50c2l61A_
not modelled 7.4 58
PDB header:metal binding protein
Chain: A: PDB Molecule:ec protein i/ii;
PDBTitle: protein and metal cluster structure of the wheat metallothionein2 domain g-ec-1. the second part of the puzzle.
51d1k8kb1
not modelled 7.2 22
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
52c3i3lA_
not modelled 7.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:alkylhalidase cmls;
PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
53c2mfpA_
not modelled 7.0 43
PDB header:metal binding protein
Chain: A: PDB Molecule:ec protein i/ii;
PDBTitle: solution structure of the circular g-domain analog from the wheat2 metallothionein ec-1
54c2vouA_
not modelled 7.0 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:2,6-dihydroxypyridine hydroxylase;
PDBTitle: structure of 2,6-dihydroxypyridine-3-hydroxylase from2 arthrobacter nicotinovorans
55c6fviA_
not modelled 7.0 58
PDB header:cell cycle
Chain: A: PDB Molecule:centrosomal protein of 192 kda;
PDBTitle: ash / papd-like domain of human cep192 (papd-like domain 7)
56d1d0gr2
not modelled 6.9 42
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
57c6d93A_
not modelled 6.9 60
PDB header:toxin
Chain: A: PDB Molecule:potassium channel toxin alpha-ktx 5.4;
PDBTitle: nmr solution structure of tamapin, mutant y31a
58c2m2qA_
not modelled 6.9 75
PDB header:unknown function
Chain: A: PDB Molecule:inhibitor cystine knot peptide mch-1;
PDBTitle: solution structure of mch-1: a novel inhibitor cystine knot peptide2 from momordica charantia
59c3fmwC_
not modelled 6.7 44
PDB header:oxidoreductase
Chain: C: PDB Molecule:oxygenase;
PDBTitle: the crystal structure of mtmoiv, a baeyer-villiger monooxygenase from2 the mithramycin biosynthetic pathway in streptomyces argillaceus.
60c4xa9g_
not modelled 6.7 62
PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:gala protein type 1, 3 or 4;
PDBTitle: crystal structure of the complex between the n-terminal domain of ravj2 and legl1 from legionella pneumophila str. philadelphia
61c5evyX_
not modelled 6.7 50
PDB header:oxidoreductase
Chain: X: PDB Molecule:salicylate hydroxylase;
PDBTitle: salicylate hydroxylase substrate complex
62d2nn6c2
not modelled 6.6 40
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
63c2r0gB_
not modelled 6.5 39
PDB header:oxidoreductase
Chain: B: PDB Molecule:rebc;
PDBTitle: chromopyrrolic acid-soaked rebc with bound 7-carboxy-k252c
64d1bkta_
not modelled 6.5 100
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
65c5kowA_
not modelled 6.4 39
PDB header:oxidoreductase
Chain: A: PDB Molecule:pentachlorophenol 4-monooxygenase;
PDBTitle: structure of rifampicin monooxygenase
66c2rgjA_
not modelled 6.4 39
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing monooxygenase;
PDBTitle: crystal structure of flavin-containing monooxygenase phzs
67c2xdoC_
not modelled 6.2 28
PDB header:oxidoreductase
Chain: C: PDB Molecule:tetx2 protein;
PDBTitle: structure of the tetracycline degrading monooxygenase tetx2 from2 bacteroides thetaiotaomicron
68c4hb9A_
not modelled 5.9 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:similarities with probable monooxygenase;
PDBTitle: crystal structure of a putative fad containing monooxygenase from2 photorhabdus luminescens subsp. laumondii tto1 (target psi-012791)
69c5c0rA_
not modelled 5.8 40
PDB header:viral protein/immune system
Chain: A: PDB Molecule:hemagglutinin, envelope glycoprotein, fibritin fusion
PDBTitle: crystal structure of a generation 3 influenza hemagglutinin stabilized2 stem complexed with the broadly neutralizing antibody c179
70d1g2ra_
not modelled 5.8 44
Fold:YlxR-like
Superfamily:YlxR-like
Family:YlxR-like
71c4n9xA_
not modelled 5.7 39
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative monooxygenase;
PDBTitle: crystal structure of the octaprenyl-methyl-methoxy-benzq molecule from2 erwina carotovora subsp. atroseptica strain scri 1043 / atcc baa-672,3 northeast structural genomics consortium (nesg) target ewr161
72c6c6rA_
not modelled 5.7 28
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:squalene monooxygenase;
PDBTitle: human squalene epoxidase (sqle, squalene monooxygenase) structure with2 fad
73c6d8tA_
not modelled 5.7 60
PDB header:toxin
Chain: A: PDB Molecule:potassium channel toxin alpha-ktx 5.4;
PDBTitle: nmr solution structure of tamapin, mutant e25k/k27e
74c4bk2A_
not modelled 5.6 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable salicylate monooxygenase;
PDBTitle: crystal structure of 3-hydroxybenzoate 6-hydroxylase2 uncovers lipid-assisted flavoprotein strategy for3 regioselective aromatic hydroxylation: q301e mutant
75c6d8sA_
not modelled 5.5 60
PDB header:toxin
Chain: A: PDB Molecule:potassium channel toxin alpha-ktx 5.4;
PDBTitle: nmr solution structure of tamapin, mutant k27e
76c4ebuA_
not modelled 5.4 26
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxygluconokinase;
PDBTitle: crystal structure of a sugar kinase (target efi-502312) from2 oceanicola granulosus, with bound amp/adp crystal form i
77c6aioA_
not modelled 5.4 44
PDB header:flavoprotein
Chain: A: PDB Molecule:pnpa;
PDBTitle: crystal structure of p-nitrophenol 4-monooxygenase pnpa from2 pseudomonas putida dll-e4
78c5dbjA_
not modelled 5.3 33
PDB header:flavoprotein
Chain: A: PDB Molecule:fadh2-dependent halogenase plta;
PDBTitle: crystal structure of halogenase plta
79c3nvnA_
not modelled 5.3 71
PDB header:viral protein/signaling protein
Chain: A: PDB Molecule:evm139;
PDBTitle: molecular mechanism of guidance cue recognition
80d2ktxa_
not modelled 5.2 80
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
81c4k2xB_
not modelled 5.1 39
PDB header:oxidoreductase, flavoprotein
Chain: B: PDB Molecule:polyketide oxygenase/hydroxylase;
PDBTitle: oxys anhydrotetracycline hydroxylase from streptomyces rimosus
82c3ihgA_
not modelled 5.1 39
PDB header:flavoprotein, oxidoreductase
Chain: A: PDB Molecule:rdme;
PDBTitle: crystal structure of a ternary complex of aklavinone-11 hydroxylase2 with fad and aklavinone
83c1dmfA_
not modelled 5.1 71
PDB header:metallothionein
Chain: A: PDB Molecule:cd6 metallothionein-1;
PDBTitle: the three-dimensional solution structure of callinectes2 sapidus metallothionein-i determined by homonuclear and3 heteronuclear magnetic resonance spectoscopy

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