Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1958c_(-)_2203025_2203639
DateMon Aug 5 13:25:05 BST 2019
Unique Job ID222213db2a7f71db
SequenceMIPTPSIGAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.100 Y:49.458 Z:19.617
Model (left) based on template d1qaza_
Top template information
Fold:alpha/alpha toroid
Superfamily:Chondroitin AC/alginate lyase
Family:Alginate lyase A1-III
Confidence and coverage
Confidence: 22.3% Coverage: 12%
25 residues ( 12% of your sequence) have been modelled with 22.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1qaza_



22.3 48
Fold:alpha/alpha toroid
Superfamily:Chondroitin AC/alginate lyase
Family:Alginate lyase A1-III
2d1p30a1



19.4 43
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group II dsDNA viruses VP
Family:Adenovirus hexon
3c4ldxB_



11.6 32
PDB header:transcription/dna
Chain: B: PDB Molecule:auxin response factor 1;
PDBTitle: crystal structure of the dna binding domain of arabidopsis thaliana2 auxin response factor 1 (arf1) in complex with protomor-like sequence3 er7
4c3q7cA_



9.9 50
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: exonuclease domain of lassa virus nucleoprotein bound to manganese
5c2vakF_



9.5 54
PDB header:viral protein
Chain: F: PDB Molecule:sigma a;
PDBTitle: crystal structure of the avian reovirus inner capsid protein sigmaa
6c3x0uB_



8.9 29
PDB header:toxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pirb
7d2vdfa1



7.5 38
Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane adhesin/invasin OpcA
8c3n6yA_



7.4 28
PDB header:unknown function
Chain: A: PDB Molecule:immunoglobulin-like protein;
PDBTitle: crystal structure of an immunoglobulin-like protein (pa1606) from2 pseudomonas aeruginosa at 1.50 a resolution
9c4gveA_



7.1 44
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: tacaribe nucleoprotein structure
10c3i7dB_



7.0 21
PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase;
PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution
11c3bboX_



7.0 42
PDB header:ribosome
Chain: X: PDB Molecule:ribosomal protein l27;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
12d2gycu1



6.8 42
Fold:Barrel-sandwich hybrid
Superfamily:Ribosomal L27 protein-like
Family:Ribosomal L27 protein
13c4l54A_



6.6 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:terminal olefin-forming fatty acid decarboxylase;
PDBTitle: structure of cytochrome p450 olet, ligand-free
14c4o6hA_



6.6 50
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: 2.8a crystal structure of lymphocytic choriomeningitis virus2 nucleoprotein c-terminal domain
15c2ftcO_



6.4 42
PDB header:ribosome
Chain: O: PDB Molecule:mitochondrial 39s ribosomal protein l27;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
16c4k7eA_



6.2 33
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of junin virus nucleoprotein
17c6dzkB_



6.1 67
PDB header:ribosome
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 30s ribosomal2 subunit with mpy
18c5zeuu_



6.1 67
PDB header:ribosome
Chain: U: PDB Molecule:
PDBTitle: m. smegmatis p/p state 30s ribosomal subunit
19c5o5jB_



6.1 67
PDB header:ribosome
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
20c1vw4R_



6.0 54
PDB header:ribosome
Chain: R: PDB Molecule:54s ribosomal protein l2, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
21c2wx3A_



not modelled 5.9 63
PDB header:structural protein
Chain: A: PDB Molecule:mrna-decapping enzyme 1a;
PDBTitle: asymmetric trimer of the human dcp1a c-terminal domain
22d1jmxg_



not modelled 5.8 38
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Quinohemoprotein amine dehydrogenase C chain
Family:Quinohemoprotein amine dehydrogenase C chain
23c5nodA_



not modelled 5.6 61
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase stkp;
PDBTitle: pasta subunit 4 of streptococcus pneumoniae stkp crystallized with peg2 and succinate
24d1pbyc_



not modelled 5.5 35
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Quinohemoprotein amine dehydrogenase C chain
Family:Quinohemoprotein amine dehydrogenase C chain
25c5kx6A_



not modelled 5.4 30
PDB header:cell adhesion
Chain: A: PDB Molecule:galactoside 2-alpha-l-fucosyltransferase;
PDBTitle: the structure of arabidopsis thaliana fut1 mutant r284k in complex2 with gdp

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite