Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1959c_(-)_2203688_2203984
DateMon Aug 5 13:25:05 BST 2019
Unique Job ID9b1c94f909820280
SequenceVSSRYLLSPA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.018 Y:40.837 Z:41.932
Model (left) based on template c5cegB_
Top template information
PDB header:toxin
Chain: B: PDB Molecule:plasmid stabilization system;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
Confidence and coverage
Confidence: 99.9% Coverage: 98%
96 residues ( 98% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5cegB_



99.9 28
PDB header:toxin
Chain: B: PDB Molecule:plasmid stabilization system;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
2c3kxeB_



99.9 43
PDB header:protein binding
Chain: B: PDB Molecule:toxin protein pare-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
3c5cw7H_



99.9 21
PDB header:toxin
Chain: H: PDB Molecule:plasmid stabilization protein pare;
PDBTitle: crystal structure of the paaa2-pare2 antitoxin-toxin complex
4d1wmia1



98.4 13
Fold:RelE-like
Superfamily:RelE-like
Family:RelE-like
5c2kheA_



98.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:toxin-like protein;
PDBTitle: solution structure of the bacterial toxin rele from thermus2 thermophilus hb8
6c3g5oC_



98.1 19
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:uncharacterized protein rv2866;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
7c3oeiH_



98.0 16
PDB header:toxin, protein binding
Chain: H: PDB Molecule:relk (toxin rv3358);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
8d2a6sa1



97.8 14
Fold:RelE-like
Superfamily:RelE-like
Family:YoeB/Txe-like
9c3bpqD_



97.4 22
PDB header:toxin
Chain: D: PDB Molecule:toxin rele3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
10c3kixy_



96.9 24
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: structure of rele nuclease bound to the 70s ribosome (postcleavage2 state; part 3 of 4)
11c2otrA_



95.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hp0892;
PDBTitle: solution structure of conserved hypothetical protein hp0892 from2 helicobacter pylori
12c5ja9D_



91.8 21
PDB header:toxin
Chain: D: PDB Molecule:toxin higb-2;
PDBTitle: crystal structure of the higb2 toxin in complex with nb6
13d1z8ma1



87.9 16
Fold:RelE-like
Superfamily:RelE-like
Family:RelE-like
14c4q2uH_



38.7 16
PDB header:toxin/toxin repressor
Chain: H: PDB Molecule:mrna interferase yafq;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
15c2apnA_



38.5 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein hi1723;
PDBTitle: hi1723 solution structure
16c2dbhA_



37.9 14
PDB header:signaling protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily
PDBTitle: solution structure of the carboxyl-terminal card-like2 domain in human tnfr-related death receptor-6
17c4mctD_



18.9 13
PDB header:toxin
Chain: D: PDB Molecule:killer protein;
PDBTitle: p. vulgaris higba structure, crystal form 1
18c3w8hB_



16.7 15
PDB header:protein binding/transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase 25;
PDBTitle: crystal structure of ccm3 in complex with the c-terminal regulatory2 domain of stk25
19d1pmma_



15.1 21
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
20d1egxa_



13.9 15
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
21c4gehB_



not modelled 13.8 12
PDB header:protein binding/transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase mst4;
PDBTitle: crystal structure of mst4 dimerization domain complex with pdcd10
22d1evha_



not modelled 13.3 16
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
23c2kruA_



not modelled 13.2 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: solution nmr structure of the pcp_red domain of light-independent2 protochlorophyllide reductase subunit b from chlorobium tepidum.3 northeast structural genomics consortium target ctr69a
24c4wwrB_



not modelled 11.0 21
PDB header:transport protein
Chain: B: PDB Molecule:ubiquitin-like protein 4a;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
25c2jp2A_



not modelled 10.9 19
PDB header:signaling protein
Chain: A: PDB Molecule:sprouty-related, evh1 domain-containing protein
PDBTitle: solution structure and resonance assignment of the n-2 terminal evh1 domain from the human spred2 protein3 (sprouty-related protein with evh1 domain isoform 2)
26c4lh9A_



not modelled 10.6 29
PDB header:transcription
Chain: A: PDB Molecule:heterocyst differentiation control protein;
PDBTitle: crystal structure of the refolded hood domain (asp256-gly295) of hetr
27c6gcsH_



not modelled 10.5 17
PDB header:oxidoreductase
Chain: H: PDB Molecule:24-kda subunit (nuhm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
28c2l09A_



not modelled 10.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:asr4154 protein;
PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143
29d1ofda1



not modelled 10.1 11
Fold:Single-stranded right-handed beta-helix
Superfamily:Alpha subunit of glutamate synthase, C-terminal domain
Family:Alpha subunit of glutamate synthase, C-terminal domain
30c4wwrD_



not modelled 9.8 21
PDB header:transport protein
Chain: D: PDB Molecule:ubiquitin-like protein 4a;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
31c4u1dA_



not modelled 9.4 10
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: structure of the pci domain of translation initiation factor eif3a
32c2x7pA_



not modelled 9.0 7
PDB header:unknown function
Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme;
PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold
33c2l4mA_



not modelled 8.2 27
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the zbeta domain of human dai and its binding2 modes to b- and z-dna
34d1ayia_



not modelled 7.9 13
Fold:Acyl carrier protein-like
Superfamily:Colicin E immunity proteins
Family:Colicin E immunity proteins
35c3j38T_



not modelled 7.8 29
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein s19a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
36c2q00B_



not modelled 7.5 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:orf c02003 protein;
PDBTitle: crystal structure of the p95883_sulso protein from sulfolobus2 solfataricus. nesg target ssr10.
37c4b6aC_



not modelled 7.3 27
PDB header:ribosome
Chain: C: PDB Molecule:60s ribosomal protein l4-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
38d2v7fa1



not modelled 7.3 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rps19E-like
39c3eyiB_



not modelled 7.0 27
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:z-dna-binding protein 1;
PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna
40c3nqjA_



not modelled 6.1 14
PDB header:dna binding protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: crystal structure of (cenp-a/h4)2 heterotetramer
41c4esxA_



not modelled 6.1 21
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine biosynthesis enzyme thi13;
PDBTitle: crystal structure of c. albicans thi5 complexed with plp
42c3hbxB_



not modelled 5.7 12
PDB header:lyase
Chain: B: PDB Molecule:glutamate decarboxylase 1;
PDBTitle: crystal structure of gad1 from arabidopsis thaliana
43c2ncxA_



not modelled 5.6 14
PDB header:antimicrobial protein
Chain: A: PDB Molecule:pseudin-2;
PDBTitle: solution structure of pseudin-2 isolated from the skin of paradoxical2 frog, pseudis paradoxa
44c3k1iA_



not modelled 5.5 9
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal strcture of flis-hp1076 complex in h. pylori
45d1gxha_



not modelled 5.5 11
Fold:Acyl carrier protein-like
Superfamily:Colicin E immunity proteins
Family:Colicin E immunity proteins
46c3o10D_



not modelled 5.2 10
PDB header:chaperone
Chain: D: PDB Molecule:sacsin;
PDBTitle: crystal structure of the hepn domain from human sacsin
47d2ga5a1



not modelled 5.2 14
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite