Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1960c_(-)_2203981_2204232
DateMon Aug 5 13:25:05 BST 2019
Unique Job ID944df5e491f00662
SequenceVGKNTSFVLD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.047 Y:64.824 Z:30.399
Model (left) based on template c3kxeD_
Top template information
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
Confidence and coverage
Confidence: 99.9% Coverage: 88%
73 residues ( 88% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kxeD_
99.9 58
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
2c5cegC_
99.9 30
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
3d2bj7a1
98.5 23
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
4d2hzaa1
98.5 25
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
5c1q5vB_
98.2 26
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
6c2ca9B_
98.2 23
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
7c2bj3D_
98.1 23
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
8d2hzab1
98.0 27
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
9c4me7E_
95.9 28
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:antitoxin endoai;
PDBTitle: crystal structure of bacillus subtilis toxin mazf in complex with2 cognate antitoxin maze
10c2k5jB_
90.8 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
11c6qeqD_
79.4 14
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
12c5x3tA_
78.8 24
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
13c2an7A_
78.4 8
PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard
14c5xe3E_
69.7 20
PDB header:hydrolase/antitoxin
Chain: E: PDB Molecule:probable antitoxin maze4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
15c5xe3F_
69.7 20
PDB header:hydrolase/antitoxin
Chain: F: PDB Molecule:probable antitoxin maze4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
16c3mb3A_
66.1 22
PDB header:signaling protein
Chain: A: PDB Molecule:ph-interacting protein;
PDBTitle: crystal structure of the second bromodomain of pleckstrin homology2 domain interacting protein (phip)
17c4p9fA_
54.0 16
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator mcbr;
PDBTitle: e. coli mcbr/yncc
18c4lz2A_
53.6 22
PDB header:signaling protein
Chain: A: PDB Molecule:bromodomain adjacent to zinc finger domain protein 2a;
PDBTitle: crystal structure of the bromodomain of human baz2a
19c6oitG_
52.3 17
PDB header:plant protein
Chain: G: PDB Molecule:protein chromatin remodeling 35;
PDBTitle: cryoem structure of arabidopsis ddr' complex (drd1 peptide-dms3-rdm1)
20c6a7vU_
49.9 15
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
21c5czgA_
not modelled 43.9 24
PDB header:gene regulation
Chain: A: PDB Molecule:hypothetical bromodomain;
PDBTitle: crystal structure analysis of hypothetical bromodomain tb427.10.74202 from trypanosoma brucei in complex with bromosporine
22c5n17B_
not modelled 41.1 20
PDB header:transcription
Chain: B: PDB Molecule:bromodomain-containing factor 1;
PDBTitle: first bromodomain (bd1) from candida albicans bdf1 bound to a2 dibenzothiazepinone (compound 3)
23c3lqiA_
not modelled 40.7 15
PDB header:transferase
Chain: A: PDB Molecule:mll1 phd3-bromo;
PDBTitle: crystal structure of mll1 phd3-bromo complexed with h3(1-9)k4me22 peptide
24c2nxbB_
not modelled 39.4 22
PDB header:signaling protein
Chain: B: PDB Molecule:bromodomain-containing protein 3;
PDBTitle: crystal structure of human bromodomain containing protein 3 (brd3)
25d3d7ca1
not modelled 38.7 7
Fold:Bromodomain-like
Superfamily:Bromodomain
Family:Bromodomain
26c2e3kC_
not modelled 38.4 15
PDB header:transcription
Chain: C: PDB Molecule:bromodomain-containing protein 2;
PDBTitle: crystal structure of the human brd2 second bromodomain in2 complexed with the acetylated histone h4 peptide
27c3daiA_
not modelled 38.1 12
PDB header:signaling protein
Chain: A: PDB Molecule:atpase family aaa domain-containing protein 2;
PDBTitle: crystal structure of the bromodomain of the human atad2
28c4p7dA_
not modelled 37.9 16
PDB header:toxin
Chain: A: PDB Molecule:antitoxin hicb3;
PDBTitle: antitoxin hicb3 crystal structure
29c2dkwA_
not modelled 36.9 12
PDB header:gene regulation
Chain: A: PDB Molecule:hypothetical protein kiaa1240;
PDBTitle: solution structure of the bromodomain of human protein2 kiaa1240
30c2yekA_
not modelled 34.4 20
PDB header:signaling protein
Chain: A: PDB Molecule:bromodomain-containing protein 2;
PDBTitle: crystal structure of the first bromodomain of human brd22 with the inhibitor gsk525762 (ibet)
31c4ldfA_
not modelled 34.4 15
PDB header:transferase
Chain: A: PDB Molecule:gcn5 like acetylase + bromodomain;
PDBTitle: crystal structure of cpbrd2 from cryptosporidium, cgd3_3190
32c3iu5A_
not modelled 33.8 12
PDB header:transcription
Chain: A: PDB Molecule:protein polybromo-1;
PDBTitle: crystal structure of the first bromodomain of human poly-bromodomain2 containing protein 1 (pb1)
33c5c4qB_
not modelled 33.8 30
PDB header:transcription
Chain: B: PDB Molecule:bromodomain;
PDBTitle: crystal structure analysis of bromodomain from leishmania donovani2 complexed with bromosporine
34d1eqfa1
not modelled 33.3 11
Fold:Bromodomain-like
Superfamily:Bromodomain
Family:Bromodomain
35c5uiyA_
not modelled 33.3 22
PDB header:transcription
Chain: A: PDB Molecule:bromodomain adjacent to zinc finger domain protein 1a;
PDBTitle: structure of bromodomain from human baz1a
36c5n18B_
not modelled 32.7 15
PDB header:transcription
Chain: B: PDB Molecule:bromodomain-containing factor 1;
PDBTitle: second bromodomain (bd2) from candida albicans bdf1 bound to an2 imidazopyridine (compound 2)
37c2e7oA_
not modelled 32.3 11
PDB header:dna binding protein
Chain: A: PDB Molecule:bromodomain adjacent to zinc finger domain 2b;
PDBTitle: solution structure of the bromodomain from human2 bromodomain adjacent to zinc finger domain 2b
38c4n4hA_
not modelled 32.2 33
PDB header:transcription
Chain: A: PDB Molecule:zinc finger mynd domain-containing protein 11;
PDBTitle: crystal structure of the bromo-pwwp of the mouse zinc finger mynd-type2 containing 11 isoform alpha in complex with histone h3.1k36me3
39c3hmhA_
not modelled 31.8 20
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid 210 kda subunit;
PDBTitle: crystal structure of the second bromodomain of human tbp-associated2 factor rna polymerase 1-like (taf1l)
40c3hmfA_
not modelled 31.3 22
PDB header:transcription
Chain: A: PDB Molecule:protein polybromo-1;
PDBTitle: crystal structure of the second bromodomain of human poly-bromodomain2 containing protein 1 (pb1)
41c2yqdA_
not modelled 30.7 12
PDB header:gene regulation
Chain: A: PDB Molecule:polybromo-1;
PDBTitle: solution structure of the fifth bromodomain from mouse2 polybromo-1
42c6mr4B_
not modelled 29.6 22
PDB header:gene regulation
Chain: B: PDB Molecule:nuclear protein sth1/nps1;
PDBTitle: crystal structure of the sth1 bromodomain from s.cerevisiae
43c3hmeB_
not modelled 29.6 19
PDB header:signaling protein
Chain: B: PDB Molecule:bromodomain-containing protein 9;
PDBTitle: crystal structure of human bromodomain containing 9 isoform 1 (brd9)
44c6cw0A_
not modelled 28.8 19
PDB header:transferase
Chain: A: PDB Molecule:cgd2_2690 protein;
PDBTitle: crystal structure of cryptosporidium parvum bromodomain cgd2_2690
45c2yynA_
not modelled 28.7 8
PDB header:transcription
Chain: A: PDB Molecule:transcription intermediary factor 1-alpha;
PDBTitle: crystal sturcture of human bromodomain protein
46c3rcwF_
not modelled 27.8 12
PDB header:transcription
Chain: F: PDB Molecule:bromodomain-containing protein 1;
PDBTitle: crystal structure of the bromodomain of human brd1
47c4rgwB_
not modelled 27.2 12
PDB header:transferase/transcription
Chain: B: PDB Molecule:transcription initiation factor tfiid subunit 7;
PDBTitle: crystal structure of a taf1-taf7 complex in human transcription factor2 iid
48c3zbeA_
not modelled 27.2 13
PDB header:toxin-antitoxin
Chain: A: PDB Molecule:paaa2;
PDBTitle: e. coli o157 pare2-associated antitoxin 2 (paaa2)
49c4hlxD_
not modelled 26.0 14
PDB header:dna binding protein
Chain: D: PDB Molecule:k9;
PDBTitle: the crystal structure of the dna binding domain of virf-1 from the2 oncogenic kshv
50c4uetA_
not modelled 25.9 12
PDB header:retinol-binding protein
Chain: A: PDB Molecule:nematode fatty acid retinoid binding protein;
PDBTitle: diversity in the structures and ligand binding sites among2 the fatty acid and retinol binding proteins of nematodes3 revealed by na-far-1 from necator americanus
51d1e6ia_
not modelled 25.4 12
Fold:Bromodomain-like
Superfamily:Bromodomain
Family:Bromodomain
52c5ko4A_
not modelled 25.3 20
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: bromodomain from trypanosoma brucei tb427.10.8150
53c3tlpA_
not modelled 25.1 16
PDB header:transcription
Chain: A: PDB Molecule:protein polybromo-1;
PDBTitle: crystal structure of the fourth bromodomain of human poly-bromodomain2 containing protein 1 (pb1)
54c6nimB_
not modelled 25.0 24
PDB header:signaling protein
Chain: B: PDB Molecule:bromodomain factor 2 protein;
PDBTitle: trypanosoma cruzi - bdf2, tcclb.506553.20, solved with bromosporine
55d2pi0a1
not modelled 24.5 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Interferon regulatory factor
56c6g1nB_
not modelled 24.3 14
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
57c4egzA_
not modelled 24.2 14
PDB header:transcription/dna
Chain: A: PDB Molecule:arabinose metabolism transcriptional repressor;
PDBTitle: crystal structure of arar(dbd) in complex with operator orr3
58d1ifya_
not modelled 23.7 14
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
59c6sbsB_
not modelled 23.6 17
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein;
PDBTitle: ytra from sulfolobus acidocaldarius, a gntr-family transcription2 factor
60c3qu3A_
not modelled 23.5 29
PDB header:dna binding protein
Chain: A: PDB Molecule:interferon regulatory factor 7;
PDBTitle: crystal structure of irf-7 dbd apo form
61d3dwya1
not modelled 22.1 11
Fold:Bromodomain-like
Superfamily:Bromodomain
Family:Bromodomain
62c3fkmX_
not modelled 21.7 20
PDB header:signaling protein
Chain: X: PDB Molecule:signaling protein;
PDBTitle: plasmodium falciparum bromodomain-containing protein pf10_0328
63c4nxjC_
not modelled 21.6 16
PDB header:dna binding protein
Chain: C: PDB Molecule:bromodomain protein;
PDBTitle: crystal structure of pf3d7_1475600, a bromodomain from plasmodium2 falciparum
64d2irfg_
not modelled 21.4 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Interferon regulatory factor
65c2i7kA_
not modelled 20.5 16
PDB header:transcription
Chain: A: PDB Molecule:bromodomain-containing protein 7;
PDBTitle: solution structure of the bromodomain of human brd7 protein
66c2d9eA_
not modelled 19.9 12
PDB header:transcription
Chain: A: PDB Molecule:peregrin;
PDBTitle: solution structure of the bromodomain of peregrin
67c6ep3B_
not modelled 19.6 29
PDB header:transcription
Chain: B: PDB Molecule:lmo0651 protein;
PDBTitle: lar controls the expression of the listeria monocytogenes agr system2 and mediates virulence.
68c6mf9B_
not modelled 19.3 12
PDB header:biosynthetic protein
Chain: B: PDB Molecule:znkn (c2hc)+athook+bromo domain protein, taf250,
PDBTitle: crystal structure of cgd4-650 with compound bi2536
69d1wuma1
not modelled 19.3 11
Fold:Bromodomain-like
Superfamily:Bromodomain
Family:Bromodomain
70c2di3A_
not modelled 19.2 37
PDB header:transcription
Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family;
PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum
71c2dllA_
not modelled 18.3 21
PDB header:cytokine
Chain: A: PDB Molecule:interferon regulatory factor 4;
PDBTitle: solution structure of the irf domain of human interferon2 regulator factors 4
72c3nxbB_
not modelled 17.9 12
PDB header:transcription
Chain: B: PDB Molecule:cat eye syndrome critical region protein 2;
PDBTitle: crystal structure of the bromodomain of human cecr2
73c2h34B_
not modelled 17.7 21
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pkne;
PDBTitle: apoenzyme crystal structure of the tuberculosis serine/threonine2 kinase, pkne
74c3k2jB_
not modelled 17.7 12
PDB header:transcription
Chain: B: PDB Molecule:protein polybromo-1;
PDBTitle: crystal structure of the 3rd bromodomain of human poly-bromodomain2 containing protein 1 (pb1)
75d1eqfa2
not modelled 17.3 19
Fold:Bromodomain-like
Superfamily:Bromodomain
Family:Bromodomain
76c2f6nA_
not modelled 17.2 11
PDB header:transcription
Chain: A: PDB Molecule:bromodomain phd finger transcription factor;
PDBTitle: crystal structure of phd finger-linker-bromodomain fragment of human2 bptf in the free form
77c3mqmB_
not modelled 17.0 20
PDB header:transferase
Chain: B: PDB Molecule:probable histone-lysine n-methyltransferase ash1l;
PDBTitle: crystal structure of the bromodomain of human ash1l
78c2hs5A_
not modelled 16.6 14
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator gntr;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1
79c6akmB_
not modelled 16.3 26
PDB header:protein binding
Chain: B: PDB Molecule:sarcolemmal membrane-associated protein;
PDBTitle: crystal structure of slmap-sike1 complex
80c3ihuA_
not modelled 16.2 20
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: crystal structure of dna binding protein (yp_298823.1) from ralstonia2 eutropha jmp134 at 1.92 a resolution
81c3qztA_
not modelled 16.2 11
PDB header:transcription/nuclear protein
Chain: A: PDB Molecule:nucleosome-remodeling factor subunit bptf;
PDBTitle: crystal structure of bptf bromo in complex with histone h4k16ac - form2 ii
82c6g8rB_
not modelled 15.5 7
PDB header:peptide binding protein
Chain: B: PDB Molecule:nuclear body protein sp140;
PDBTitle: sp140 phd-bromodomain complex with scfv
83c4ptbA_
not modelled 14.8 4
PDB header:transcription
Chain: A: PDB Molecule:nuclear autoantigen sp-100;
PDBTitle: crystal structure of human sp100 phd-bromodomain in the free state
84d1rz4a2
not modelled 14.3 14
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
85c1xrxD_
not modelled 13.8 20
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
86d1xrxa1
not modelled 13.8 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
87c2h5xA_
not modelled 13.6 32
PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva;
PDBTitle: ruva from mycobacterium tuberculosis
88c1ixrB_
not modelled 13.1 22
PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
89d2hs5a1
not modelled 12.4 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
90c1tu3H_
not modelled 12.2 27
PDB header:protein transport
Chain: H: PDB Molecule:rab gtpase binding effector protein 1;
PDBTitle: crystal structure of rab5 complex with rabaptin5 c-terminal2 domain
91c5u7gB_
not modelled 11.8 12
PDB header:transferase
Chain: B: PDB Molecule:creb-binding protein;
PDBTitle: crystal structure of the catalytic core of cbp
92c3iu6A_
not modelled 11.0 22
PDB header:transcription
Chain: A: PDB Molecule:protein polybromo-1;
PDBTitle: crystal structure of the sixth bromodomain of human poly-bromodomain2 containing protein 1 (pb1)
93c1zxaB_
not modelled 10.8 25
PDB header:transferase
Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme;
PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia
94c1eqfA_
not modelled 10.3 20
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase ii transcription initiation
PDBTitle: crystal structure of the double bromodomain module from2 human tafii250
95d2bl8a1
not modelled 10.1 18
Fold:Bromodomain-like
Superfamily:Bacteriocin immunity protein-like
Family:EntA-Im
96c6iyaD_
not modelled 10.0 27
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
97c4ypiF_
not modelled 9.8 25
PDB header:rna binding protein
Chain: F: PDB Molecule:polymerase cofactor vp35;
PDBTitle: structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35
98c4ypiG_
not modelled 9.8 25
PDB header:rna binding protein
Chain: G: PDB Molecule:polymerase cofactor vp35;
PDBTitle: structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35
99c1nhgD_
not modelled 9.5 9
PDB header:oxidoreductase
Chain: D: PDB Molecule:enoyl-acyl carrier reductase;
PDBTitle: crystal structure analysis of plasmodium falciparum enoyl-2 acyl-carrier-protein reductase with triclosan

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