Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1961_(-)_2204219_2204713
DateMon Aug 5 13:25:06 BST 2019
Unique Job ID142acb9eeeb90d4e
SequenceVFLPTNAQYQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:12.356 Y:12.023 Z:32.333
Model (left) based on template c2f0cC_
Top template information
PDB header:viral protein
Chain: C: PDB Molecule:phage tp901-1 orf49 (bpp);
PDBTitle: structure of the receptor binding protein (orf49, bbp) from lactophage2 tp901-1
Confidence and coverage
Confidence: 55.2% Coverage: 7%
12 residues ( 7% of your sequence) have been modelled with 55.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2f0cC_



55.2 33
PDB header:viral protein
Chain: C: PDB Molecule:phage tp901-1 orf49 (bpp);
PDBTitle: structure of the receptor binding protein (orf49, bbp) from lactophage2 tp901-1
2d2f0ca1



49.5 33
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Lactophage receptor-binding protein head domain
3c3u6xF_



47.2 33
PDB header:viral protein
Chain: F: PDB Molecule:bpp;
PDBTitle: phage tp901-1 baseplate tripod
4d1zrua1



47.0 50
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Lactophage receptor-binding protein head domain
5c3d8mA_



46.7 50
PDB header:virus/viral protein
Chain: A: PDB Molecule:baseplate protein, receptor binding protein;
PDBTitle: crystal structure of a chimeric receptor binding protein from2 lactococcal phages subspecies tp901-1 and p2
6c3da0C_



46.0 50
PDB header:viral protein
Chain: C: PDB Molecule:cleaved chimeric receptor binding protein from
PDBTitle: crystal structure of a cleaved form of a chimeric receptor binding2 protein from lactococcal phages subspecies tp901-1 and p2
7c5l6nI_



41.1 63
PDB header:hydrolase
Chain: I: PDB Molecule:thrombin inhibitor madanin 1;
PDBTitle: disulfated madanin-thrombin complex
8d2dsma1



24.2 45
Fold:YqaI-like
Superfamily:YqaI-like
Family:YqaI-like
9c4v194_



17.1 38
PDB header:ribosome
Chain: 4: PDB Molecule:mitoribosomal protein bl31m, mrpl55;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
10c4fc5A_



14.5 21
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of ton_0340
11c5kpeA_



13.7 41
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664
12c3ij6A_



13.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized metal-dependent hydrolase;
PDBTitle: crystal structure of an uncharacterized metal-dependent hydrolase from2 lactobacillus acidophilus
13c5jp6A_



13.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:putative polysaccharide deacetylase;
PDBTitle: bdellovibrio bacteriovorus peptidoglycan deacetylase bd3279
14d2gwga1



13.2 8
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:PP1699/LP2961-like
15c2nchA_



13.1 30
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: solution structure of translation initiation factor if1 from wolbachia2 endosymbiont strain trs of brugia malayi
16c2o5rA_



12.6 38
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase 1;
PDBTitle: crystal structure of glutamyl-trna synthetase 1 (ec 6.1.1.17)2 (glutamate-trna ligase 1) (glurs 1) (tm1351) from thermotoga maritima3 at 2.5 a resolution
17c2qahA_



11.9 60
PDB header:hydrolase
Chain: A: PDB Molecule:2-pyrone-4,6-dicarboxylic acid hydrolase;
PDBTitle: crystal structure of the 2-pyrone-4,6-dicarboxylic acid hydrolase from2 sphingomonas paucimobilis
18d2f6ka1



11.9 30
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:PP1699/LP2961-like
19c6grvA_



11.3 33
PDB header:metal binding protein
Chain: A: PDB Molecule:metallothionein;
PDBTitle: cadmium(ii) form of full-length metallothionein from pseudomonas2 fluorescens q2-87 (pflq2 mt)
20c6omqA_



10.9 42
PDB header:oxidoreductase
Chain: A: PDB Molecule:ptmu3;
PDBTitle: crystal structure of ptmu3 complexed with ptm substrate
21c1iv8A_



not modelled 10.3 21
PDB header:isomerase
Chain: A: PDB Molecule:maltooligosyl trehalose synthase;
PDBTitle: crystal structure of maltooligosyl trehalose synthase
22c3zifR_



not modelled 9.9 25
PDB header:virus
Chain: R: PDB Molecule:pviii;
PDBTitle: cryo-em structures of two intermediates provide insight into2 adenovirus assembly and disassembly
23d2hbva1



not modelled 9.6 33
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:PP1699/LP2961-like
24d1w2ya_



not modelled 9.3 45
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:Type II deoxyuridine triphosphatase
25c3cjpA_



not modelled 9.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:predicted amidohydrolase, dihydroorotase family;
PDBTitle: crystal structure of an uncharacterized amidohydrolase cac3332 from2 clostridium acetobutylicum
26c2wm1A_



not modelled 9.2 15
PDB header:lyase
Chain: A: PDB Molecule:2-amino-3-carboxymuconate-6-semialdehyde
PDBTitle: the crystal structure of human alpha-amino-beta-2 carboxymuconate-epsilon-semialdehyde decarboxylase in3 complex with 1,3- dihydroxyacetonephosphate suggests a4 regulatory link between nad synthesis and glycolysis
27c5vn5A_



not modelled 9.2 40
PDB header:hydrolase
Chain: A: PDB Molecule:2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl meta-
PDBTitle: crystal structure of ligy from sphingobium sp. strain syk-6
28c3m4wE_



not modelled 8.7 32
PDB header:signaling protein/signaling protein
Chain: E: PDB Molecule:sigma-e factor negative regulatory protein;
PDBTitle: structural basis for the negative regulation of bacterial stress2 response by rseb
29c2ja2A_



not modelled 8.5 42
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase;
PDBTitle: mycobacterium tuberculosis glutamyl-trna synthetase
30c5oarC_



not modelled 8.2 52
PDB header:hydrolase
Chain: C: PDB Molecule:beta-hexosaminidase;
PDBTitle: crystal structure of native beta-n-acetylhexosaminidase isolated from2 aspergillus oryzae
31c2cfoA_



not modelled 7.8 50
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase;
PDBTitle: non-discriminating glutamyl-trna synthetase from2 thermosynechococcus elongatus in complex with glu
32c6dxsB_



not modelled 7.7 23
PDB header:lyase/lyase inhibitor
Chain: B: PDB Molecule:4-oxalomesaconate hydratase;
PDBTitle: crystal structure of the ligj hydratase e284q mutant substrate complex2 with (3z)-2-keto-4-carboxy-3-hexenedioate
33c4dziD_



not modelled 7.6 46
PDB header:hydrolase
Chain: D: PDB Molecule:putative tim-barrel metal-dependent hydrolase;
PDBTitle: crystal structure of amidohydrolase map2389c (target efi-500390) from2 mycobacterium avium subsp. paratuberculosis k-10
34c4l5pD_



not modelled 7.6 15
PDB header:lyase
Chain: D: PDB Molecule:5-carboxyvanillate decarboxylase;
PDBTitle: crystal structure of 5-carboxyvanillate decarboxylase from2 sphingomonas paucimobilis complexed with 4-hydroxy-3-methoxy-5-3 nitrobenzoic acid
35c4mupC_



not modelled 7.5 47
PDB header:hydrolase
Chain: C: PDB Molecule:amidohydrolase;
PDBTitle: crystal structure of agrobacterium tumefaciens atu3138 (efi target2 505157), apo structure
36d1grja2



not modelled 7.4 24
Fold:FKBP-like
Superfamily:FKBP-like
Family:GreA transcript cleavage factor, C-terminal domain
37c1grjA_



not modelled 7.1 21
PDB header:transcription regulation
Chain: A: PDB Molecule:grea protein;
PDBTitle: grea transcript cleavage factor from escherichia coli
38d1nuwa_



not modelled 7.1 22
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
39c5ydfA_



not modelled 7.0 23
PDB header:transcription
Chain: A: PDB Molecule:parafibromin;
PDBTitle: crystal structure of a disease-related gene, hcdc73(1-100)
40d2dvta1



not modelled 6.7 33
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:PP1699/LP2961-like
41c4hk6D_



not modelled 6.7 27
PDB header:lyase
Chain: D: PDB Molecule:uracil-5-carboxylate decarboxylase;
PDBTitle: crystal structure of cordyceps militaris idcase in complex with 5-2 nitro-uracil
42c5k8qB_



not modelled 6.6 40
PDB header:metal binding protein
Chain: B: PDB Molecule:zgc:136689;
PDBTitle: crystal structure of calcium-loaded calmodulin in complex with stra62 cambp2-site peptide.
43d1ay7b_



not modelled 6.6 27
Fold:Barstar-like
Superfamily:Barstar-related
Family:Barstar-related
44c2kamA_



not modelled 6.4 44
PDB header:toxin
Chain: A: PDB Molecule:delta-hemolysin;
PDBTitle: nmr structure of delta-toxin from staphylococcus aureus in2 cd3oh
45d1bk4a_



not modelled 6.3 22
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
46c2fhyL_



not modelled 6.3 22
PDB header:hydrolase
Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1;
PDBTitle: structure of human liver fpbase complexed with a novel benzoxazole as2 allosteric inhibitor
47c1dtcA_



not modelled 6.3 44
PDB header:toxin
Chain: A: PDB Molecule:acetyl-delta-toxin;
PDBTitle: delta-toxin and analogues as peptide models for protein ion2 channels
48c3nurA_



not modelled 6.2 25
PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolase;
PDBTitle: crystal structure of a putative amidohydrolase from staphylococcus2 aureus
49c4infA_



not modelled 6.2 23
PDB header:hydrolase
Chain: A: PDB Molecule:metal-dependent hydrolase;
PDBTitle: crystal structure of amidohydrolase saro_0799 (target efi-505250) from2 novosphingobium aromaticivorans dsm 12444 with bound calcium
50c3afhA_



not modelled 6.1 38
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase 2;
PDBTitle: crystal structure of thermotoga maritima nondiscriminating glutamyl-2 trna synthetase in complex with a glutamyl-amp analog
51c2dtbA_



not modelled 6.0 44
PDB header:toxin
Chain: A: PDB Molecule:delta-toxin;
PDBTitle: delta-toxin and analogues as peptide models for protein ion2 channels
52c2y1hA_



not modelled 6.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:putative deoxyribonuclease tatdn3;
PDBTitle: crystal structure of the human tatd-domain protein 3 (tatdn3)
53c3a64A_



not modelled 6.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:cellobiohydrolase;
PDBTitle: crystal structure of cccel6c, a glycoside hydrolase family 62 enzyme, from coprinopsis cinerea
54c1jqpA_



not modelled 6.0 43
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidyl peptidase i;
PDBTitle: dipeptidyl peptidase i (cathepsin c), a tetrameric cysteine protease2 of the papain family
55d1yixa1



not modelled 5.9 23
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:TatD Mg-dependent DNase-like
56d1gtra2



not modelled 5.9 42
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
57d1bbua1



not modelled 5.8 29
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
58d1ftaa_



not modelled 5.8 22
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
59d1nzja_



not modelled 5.7 58
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
60c4do7B_



not modelled 5.7 38
PDB header:hydrolase
Chain: B: PDB Molecule:amidohydrolase 2;
PDBTitle: crystal structure of an amidohydrolase (cog3618) from burkholderia2 multivorans (target efi-500235) with bound zn, space group c2
61d2ffia1



not modelled 5.5 54
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:PP1699/LP2961-like
62c2v6xB_



not modelled 5.5 33
PDB header:protein transport
Chain: B: PDB Molecule:doa4-independent degradation protein 4;
PDBTitle: stractural insight into the interaction between escrt-iii and vps4
63c6s3fB_



not modelled 5.5 50
PDB header:antifungal protein
Chain: B: PDB Molecule:2s albumin;
PDBTitle: moringa seed protein mo-cbp3-4
64c6b1pA_



not modelled 5.4 42
PDB header:ligase
Chain: A: PDB Molecule:glutamate--trna ligase 1;
PDBTitle: crystal structure of glutamate-trna synthetase from helicobacter2 pylori
65c3gitA_



not modelled 5.4 36
PDB header:transferase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase/acetyl-coa synthase subunit
PDBTitle: crystal structure of a truncated acetyl-coa synthase
66c3al0C_



not modelled 5.4 38
PDB header:ligase/rna
Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c,linker,
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
67c2dzmA_



not modelled 5.4 19
PDB header:structural genomics unknown function
Chain: A: PDB Molecule:fas-associated factor 1;
PDBTitle: solution structure of the ubiquitin-like domain in human2 fas-associated factor 1 (hfaf1)
68d2cx6a1



not modelled 5.3 16
Fold:Barstar-like
Superfamily:Barstar-related
Family:Barstar-related
69c5lgcA_



not modelled 5.3 30
PDB header:hydrolase
Chain: A: PDB Molecule:arce4a;
PDBTitle: t48 deacetylase with substrate
70c2vyoA_



not modelled 5.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase domain-containing protein
PDBTitle: chitin deacetylase family member from encephalitozoon cuniculi
71c2vqlD_



not modelled 5.2 86
PDB header:membrane protein
Chain: D: PDB Molecule:uncharacterized protein cgl0972;
PDBTitle: crystal structure of porb from corynebacterium glutamicum (2 crystal form iii)
72c3tnxA_



not modelled 5.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:papain;
PDBTitle: structure of the precursor of a thermostable variant of papain at 2.62 angstroem resolution
73c2gq1A_



not modelled 5.1 26
PDB header:hydrolase
Chain: A: PDB Molecule:fructose-1,6-bisphosphatase;
PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions

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