Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1962A_(RVBD1962A)_2205284_2205556
DateMon Aug 5 13:25:06 BST 2019
Unique Job IDc819535196f7adcd
SequenceVNEVSIRTLN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.224 Y:24.768 Z:33.194
Model (left) based on template c2odkD_
Top template information
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
Confidence and coverage
Confidence: 99.4% Coverage: 48%
43 residues ( 48% of your sequence) have been modelled with 99.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2odkD_



99.4 14
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
2d2odka1



99.3 14
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
3c3hryA_



99.1 33
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
4c3hs2H_



99.1 33
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
5d2a6qb1



98.7 12
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3g5oA_



98.7 19
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
7d2a6qa1



98.5 12
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
8c3oeiB_



97.8 18
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
9c3d55A_



97.7 18
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
10c3k6qB_



90.6 13
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c1skoA_



58.4 18
PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
12d3cpta1



53.0 17
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
13d2ns0a1



22.3 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
14d2ifqa1



20.8 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
15c2wtoB_



14.1 28
PDB header:metal binding protein
Chain: B: PDB Molecule:orf131 protein;
PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34
16c1gk7A_



13.5 19
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 1a fragment (1a)
17c4ewvB_



13.4 32
PDB header:ligase
Chain: B: PDB Molecule:4-substituted benzoates-glutamate ligase gh3.12;
PDBTitle: crystal structure of gh3.12 in complex with ampcpp
18d1ogda_



13.0 26
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
19c2wcvI_



12.6 30
PDB header:isomerase
Chain: I: PDB Molecule:l-fucose mutarotase;
PDBTitle: crystal structure of bacterial fucu
20d2hq7a1



10.9 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
21d1x6va1



not modelled 10.4 15
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
22c3e7nB_



not modelled 10.3 25
PDB header:transport protein
Chain: B: PDB Molecule:d-ribose high-affinity transport system;
PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2
23c3s4rB_



not modelled 9.8 19
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment with a stabilizing2 mutation
24c3p13B_



not modelled 9.8 26
PDB header:isomerase
Chain: B: PDB Molecule:d-ribose pyranase;
PDBTitle: complex structure of d-ribose pyranase sa240 with d-ribose
25c4a34L_



not modelled 9.1 23
PDB header:isomerase
Chain: L: PDB Molecule:rbsd/fucu transport protein family protein;
PDBTitle: crystal structure of the fucose mutarotase in complex with2 l-fucose from streptococcus pneumoniae
26c2wcuB_



not modelled 8.9 35
PDB header:isomerase
Chain: B: PDB Molecule:protein fucu homolog;
PDBTitle: crystal structure of mammalian fucu
27c2oe0B_



not modelled 8.6 29
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin-3;
PDBTitle: crystal structure of mitochondrial thioredoxin 3 from2 saccharomyces cerevisiae
28c4heoA_



not modelled 8.1 35
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
29c3mvkA_



not modelled 8.1 19
PDB header:isomerase
Chain: A: PDB Molecule:protein fucu;
PDBTitle: the crystal structure of fucu from bifidobacterium longum to 1.65a
30d1y8xb1



not modelled 7.2 21
Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Ubiquitin activating enzymes (UBA)
31d1bifa2



not modelled 7.1 21
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
32d1tipa_



not modelled 6.9 21
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
33d2ob5a1



not modelled 6.9 15
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
34c4u4cB_



not modelled 6.8 40
PDB header:hydrolase
Chain: B: PDB Molecule:protein air2,poly(a) rna polymerase protein 2;
PDBTitle: the molecular architecture of the tramp complex reveals the2 organization and interplay of its two catalytic activities
35d1xfla_



not modelled 6.6 21
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
36c2vm2C_



not modelled 6.6 7
PDB header:oxidoreductase
Chain: C: PDB Molecule:thioredoxin h isoform 1.;
PDBTitle: crystal structure of barley thioredoxin h isoform 1 crystallized using2 peg as precipitant
37c5jy5A_



not modelled 6.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin 1 from cryptococcus neoformans at 1.82 angstroms resolution
38d1k6ma2



not modelled 6.3 21
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
39c4cw9A_



not modelled 5.8 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: entamoeba histolytica thiredoxin c34s mutant
40d1ep7a_



not modelled 5.7 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
41c5lddA_



not modelled 5.7 40
PDB header:protein transport
Chain: A: PDB Molecule:mon1;
PDBTitle: crystal structure of the heterodimeric gef mon1-ccz1 in complex with2 ypt7
42d1ti3a_



not modelled 5.4 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
43d1y7ma1



not modelled 5.4 14
Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
44d1xwaa_



not modelled 5.4 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
45c3l32B_



not modelled 5.4 33
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the dimerisation domain of the rabies virus2 phosphoprotein
46c3v62C_



not modelled 5.3 50
PDB header:protein binding/dna binding protein
Chain: C: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
47c3v62F_



not modelled 5.3 50
PDB header:protein binding/dna binding protein
Chain: F: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
48c6c5rF_



not modelled 5.2 25
PDB header:cytosolic protein
Chain: F: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the soluble domain of the mitochondrial calcium2 uniporter
49d1qx4a1



not modelled 5.2 17
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
50d1syra_



not modelled 5.1 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase

Binding site prediction 

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