Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1962c_(-)_2204873_2205280
DateMon Aug 5 13:25:06 BST 2019
Unique Job IDbeac800aeb7052db
SequenceVIYLETSALV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.246 Y:44.090 Z:33.489
Model (left) based on template d1v8pa_
Top template information
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
Confidence and coverage
Confidence: 99.7% Coverage: 82%
111 residues ( 82% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1v8pa_



99.7 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
2c1v8pK_



99.7 21
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
3d2fe1a1



99.7 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c2fe1A_



99.7 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
5c5wzfB_



99.6 16
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
6c4xgrG_



99.5 21
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
7d2h1ca1



99.5 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
8c6a7vG_



99.4 17
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
9c3h87B_



99.4 17
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
10c3zvkC_



99.4 17
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
11d1y82a1



99.3 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
12c6nklA_



99.2 14
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
13c5x3tD_



99.2 18
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
14c4chgC_



99.2 13
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
15d1v96a1



99.2 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
16c5l6mC_



99.1 16
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
17c3tndC_



99.1 17
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
18c5sv2A_



99.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
19c3dboB_



98.9 19
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
20c3i8oA_



98.7 16
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
21c3ix7A_



not modelled 98.5 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
22d1w8ia_



not modelled 98.3 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
23d1o4wa_



not modelled 97.9 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c5ywwA_



not modelled 97.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
25c2hwwC_



not modelled 97.9 16
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
26c5f4hF_



not modelled 97.8 16
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
27c2lcqA_



not modelled 97.8 16
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
28c5jpqd_



not modelled 96.3 15
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c6g5iy_



not modelled 95.5 17
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
30c5yz4A_



not modelled 95.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
31c2mdtA_



not modelled 93.0 18
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
32c4mj7B_



not modelled 92.5 9
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
33c2hwyB_



not modelled 72.2 17
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
34d1tfra2



not modelled 69.2 7
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
35c4mwaA_



not modelled 46.4 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: 1.85 angstrom crystal structure of gcpe protein from bacillus2 anthracis
36c2zkr9_



not modelled 41.2 29
PDB header:ribosomal protein/rna
Chain: 9: PDB Molecule:60s ribosomal protein l32;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
37c4a1cX_



not modelled 39.3 16
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l32;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
38c3j3be_



not modelled 38.6 26
PDB header:ribosome
Chain: E: PDB Molecule:60s ribosomal protein l6;
PDBTitle: structure of the human 60s ribosomal proteins
39c3zf7i_



not modelled 34.4 11
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l18;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
40c3cceY_



not modelled 34.2 33
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l32e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation u2535a
41d1vqoy1



not modelled 34.2 33
Fold:Barstar-like
Superfamily:Ribosomal protein L32e
Family:Ribosomal protein L32e
42c5mq9A_



not modelled 32.4 16
PDB header:translation
Chain: A: PDB Molecule:uncharacterized protein yacp;
PDBTitle: crystal structure of rae1 (yacp) from bacillus subtilis (w164l mutant)
43d3eeqa1



not modelled 32.0 10
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
44d1y81a1



not modelled 26.8 5
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
45c3j21b_



not modelled 24.5 29
PDB header:ribosome
Chain: B: PDB Molecule:50s ribosomal protein l2p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
46c3lotC_



not modelled 23.6 14
PDB header:structure genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution
47c3c6cA_



not modelled 23.2 33
PDB header:hydrolase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution
48c2duwA_



not modelled 22.9 20
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
49c3no5C_



not modelled 22.6 29
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf849 domain containing protein2 (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution
50d1ulza2



not modelled 22.4 13
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
51c3e02A_



not modelled 21.5 33
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf849;
PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution
52c3iz5h_



not modelled 21.4 21
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l7a (l7ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
53d2j9ga2



not modelled 20.9 18
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
54d1iuka_



not modelled 20.6 20
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
55c5zmyF_



not modelled 20.5 14
PDB header:hydrolase
Chain: F: PDB Molecule:cis-epoxysuccinate hydrolase;
PDBTitle: crystal structure of a cis-epoxysuccinate hydrolase producing d(-)-2 tartaric acids
56c3e49A_



not modelled 18.5 38
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold;
PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution
57c3chvA_



not modelled 18.1 29
PDB header:metal binding protein
Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim
PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution
58c2ihnA_



not modelled 17.8 5
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
59c2y7eA_



not modelled 17.7 33
PDB header:lyase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form)
60c4nncA_



not modelled 17.0 14
PDB header:lyase
Chain: A: PDB Molecule:obca, oxalate biosynthetic component a;
PDBTitle: ternary complex of obca with c4-coa adduct and oxalate
61d2w6ka1



not modelled 14.8 27
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
62d1xo1a2



not modelled 14.5 11
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
63d1cmwa2



not modelled 13.6 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
64c3v33A_



not modelled 13.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
65c3v32B_



not modelled 13.0 20
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
66c1s1i0_



not modelled 11.8 45
PDB header:ribosome
Chain: 0: PDB Molecule:60s ribosomal protein l32;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
67d1kzyc2



not modelled 9.9 33
Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
68d2csua1



not modelled 9.2 24
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
69d1w96a2



not modelled 8.4 16
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
70c2cokA_



not modelled 7.7 20
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1;
PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1
71c3eeqB_



not modelled 6.7 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g homolog;
PDBTitle: crystal structure of a putative cobalamin biosynthesis protein g2 homolog from sulfolobus solfataricus
72c3ghfA_



not modelled 6.7 16
PDB header:cell cycle
Chain: A: PDB Molecule:septum site-determining protein minc;
PDBTitle: crystal structure of the septum site-determining protein minc from2 salmonella typhimurium
73c1gr0A_



not modelled 6.6 13
PDB header:isomerase
Chain: A: PDB Molecule:inositol-3-phosphate synthase;
PDBTitle: myo-inositol 1-phosphate synthase from mycobacterium2 tuberculosis in complex with nad and zinc.
74d1j6ua1



not modelled 6.5 20
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
75d1xmxa_



not modelled 5.5 24
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hypothetical protein VC1899
76c3ff4A_



not modelled 5.4 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
77c1u1iC_



not modelled 5.3 21
PDB header:isomerase
Chain: C: PDB Molecule:myo-inositol-1-phosphate synthase;
PDBTitle: myo-inositol phosphate synthase mips from a. fulgidus

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