Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1964_(yrbE3A)_2207708_2208505
DateMon Aug 5 13:25:06 BST 2019
Unique Job IDbe5f11e6a7d26e28
SequenceMVIVADKAAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.815 Y:44.469 Z:69.572
Model (left) based on template c6ic4H_
Top template information
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 95%
253 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4H_



100.0 23
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5x5yG_



75.1 16
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
3c5l75G_



57.7 27
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
4c6qvcB_



44.7 15
PDB header:membrane protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: cryoem structure of the human clc-1 chloride channel, cbs state 1
5c5l75F_



42.8 14
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
6c6mjpF_



40.5 10
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
7c6f2dJ_



38.0 15
PDB header:protein transport
Chain: J: PDB Molecule:flagellar biosynthetic protein fliq;
PDBTitle: a flipqr complex forms the core of the salmonella type iii secretion2 system export apparatus.
8c6f2dI_



38.0 15
PDB header:protein transport
Chain: I: PDB Molecule:flagellar biosynthetic protein fliq;
PDBTitle: a flipqr complex forms the core of the salmonella type iii secretion2 system export apparatus.
9c6mjpG_



35.7 11
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
10c6r6bI_



30.0 9
PDB header:protein transport
Chain: I: PDB Molecule:surface presentation of antigens protein spaq;
PDBTitle: structure of the core shigella flexneri type iii secretion system2 export gate complex sctrst (spa24/spa9/spa29).
11c6coyB_



26.6 14
PDB header:transport protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: human clc-1 chloride ion channel, transmembrane domain
12c5x5yF_



21.6 13
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
13c5ghaF_



21.5 40
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
14d2hafa1



19.1 40
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
15c5xu1M_



18.7 14
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
16c2m67A_



18.4 6
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
17c2kn8A_



15.5 25
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:dna cleavage and packaging protein large subunit, ul89;
PDBTitle: nmr structure of the c-terminal domain of pul89
18c5ws4A_



14.3 11
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
19c2aj2A_



14.2 40
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical upf0301 protein vc0467;
PDBTitle: x-ray crystal structure of protein vc0467 from vibrio2 cholerae. northeast structural genomics consortium target3 vcr8.
20c2hv8D_



13.5 16
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
21c1abzA_



not modelled 12.3 31
PDB header:de novo design
Chain: A: PDB Molecule:alpha-t-alpha;
PDBTitle: alpha-t-alpha, a de novo designed peptide, nmr, 232 structures
22c2hg5D_



not modelled 11.4 17
PDB header:membrane protein
Chain: D: PDB Molecule:kcsa channel;
PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter
23c4migC_



not modelled 10.7 24
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyranose 2-oxidase;
PDBTitle: pyranose 2-oxidase from phanerochaete chrysosporium, recombinant wild2 type
24d1z96a1



not modelled 10.4 24
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
25c2yvxD_



not modelled 9.9 18
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
26d3dhwa1



not modelled 8.7 13
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
27c2mfrA_



not modelled 8.1 9
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
28d1q74a_



not modelled 7.5 36
Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
29c1cf3A_



not modelled 7.3 13
PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from apergillus niger
30c1vmaA_



not modelled 7.3 25
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
31d2k0bx1



not modelled 7.1 27
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
32c1gw4A_



not modelled 7.0 45
PDB header:high density lipoproteins
Chain: A: PDB Molecule:apoa-i;
PDBTitle: the helix-hinge-helix structural motif in human2 apolipoprotein a-i determined by nmr spectroscopy, 13 structure
33d2do8a1



not modelled 7.0 30
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
34d1g7oa1



not modelled 6.7 12
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
35c3n4qA_



not modelled 6.5 30
PDB header:dna binding protein
Chain: A: PDB Molecule:terminase subunit ul89 protein;
PDBTitle: human cytomegalovirus terminase nuclease domain, mn soaked
36d2hjqa1



not modelled 6.2 20
Fold:LEM/SAP HeH motif
Superfamily:Rho N-terminal domain-like
Family:YqbF C-terminal domain-like
37c5l1xH_



not modelled 6.2 53
PDB header:viral protein
Chain: H: PDB Molecule:hmpv f1 subunit;
PDBTitle: structure of the human metapneumovirus fusion protein in the2 postfusion conformation
38c4ak9A_



not modelled 6.0 25
PDB header:protein transport
Chain: A: PDB Molecule:cpftsy;
PDBTitle: structure of chloroplast ftsy from physcomitrella patens
39c6bs7A_



not modelled 5.9 35
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase from legionella2 pneumophila philadelphia 1
40c4dagA_



not modelled 5.8 53
PDB header:viral protein/immune system
Chain: A: PDB Molecule:fusion glycoprotein f0;
PDBTitle: structure of the human metapneumovirus fusion protein with2 neutralizing antibody identifies a pneumovirus antigenic site
41c5l3sF_



not modelled 5.7 33
PDB header:protein transport
Chain: F: PDB Molecule:signal recognition particle receptor ftsy;
PDBTitle: structure of the gtpase heterodimer of crenarchaeal srp54 and ftsy
42c2jy8A_



not modelled 5.7 27
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-binding protein p62;
PDBTitle: nmr structure of the ubiquitin associated (uba) domain of2 p62 (sqstm1) in complex with ubiquitin. rdc refined
43c2j7pA_



not modelled 5.6 25
PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
44c3n4pA_



not modelled 5.6 30
PDB header:dna binding protein
Chain: A: PDB Molecule:terminase subunit ul89 protein;
PDBTitle: human cytomegalovirus terminase nuclease domain
45c5egiB_



not modelled 5.6 9
PDB header:membrane protein
Chain: B: PDB Molecule:uncharacterized protein y57a10a.10;
PDBTitle: structure of a trimeric intracellular cation channel from c. elegans2 with bound ca2+
46c5wb0F_



not modelled 5.5 53
PDB header:viral protein
Chain: F: PDB Molecule:fusion glycoprotein f0;
PDBTitle: crystal structure of human metapneumovirus fusion glycoprotein2 stabilized in the prefusion state
47c3b9qA_



not modelled 5.5 25
PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
48c6cy1B_



not modelled 5.5 33
PDB header:signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor ftsy;
PDBTitle: crystal structure of signal recognition particle receptor ftsy from2 elizabethkingia anophelis
49c5eikA_



not modelled 5.4 11
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein y57a10a.28;
PDBTitle: structure of a trimeric intracellular cation channel from c. elegans2 in the absence of ca2+
50c3dfmA_



not modelled 5.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:teicoplanin pseudoaglycone deacetylase orf2;
PDBTitle: the crystal structure of the zinc inhibited form of2 teicoplanin deacetylase orf2
51c1w1nA_



not modelled 5.2 15
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase tor1;
PDBTitle: the solution structure of the fatc domain of the protein kinase tor12 from yeast
52c2kitA_



not modelled 5.2 15
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase tor1;
PDBTitle: the solution structure of the reduced yeast tor1 fatc domain bound to2 dpc micelles at 298k

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Transmembrane helix prediction 

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