Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1968_(mce3C)_2211634_2212866
DateMon Aug 5 13:25:06 BST 2019
Unique Job ID0e3d33bdbd980033
SequenceMKSFAERNRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.105 Y:36.523 Z:69.475
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 31%
126 residues ( 31% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
286 residues ( 70%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_



99.9 30
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_



99.8 20
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnD_



99.6 23
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnA_



99.6 23
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnC_



99.6 23
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnE_



99.6 23
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnF_



99.6 23
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnB_



99.6 23
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c3g67A_



95.2 7
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
10c1qu7A_



93.9 8
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
11c3vkhA_



88.8 7
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
12c6b7nC_



87.0 10
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
13c2ieqC_



86.3 11
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
14c6e6aB_



85.3 17
PDB header:protein binding
Chain: B: PDB Molecule:inclusion membrane protein a;
PDBTitle: triclinic crystal form of inca g144a point mutant
15c3lnrA_



84.7 18
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
16c3zx6A_



83.9 11
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
17d1eq1a_



83.7 11
Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
18c5u0pU_



83.6 11
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
19c2ch7A_



82.5 12
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
20c2j5uB_



79.5 12
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
21c2d4yA_



not modelled 79.4 13
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
22c6ezvX_



not modelled 77.5 11
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
23d1st6a4



not modelled 77.0 14
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
24c1deqO_



not modelled 73.1 9
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
25c6gajA_



not modelled 72.7 9
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
26c2wpqA_



not modelled 72.5 5
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
27c3ojaB_



not modelled 71.5 13
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
28c6nb3B_



not modelled 70.2 17
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
29c1deqF_



not modelled 69.4 13
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
30c1ei3E_



not modelled 68.2 14
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
31c4rh7A_



not modelled 68.1 9
PDB header:motor protein
Chain: A: PDB Molecule:green fluorescent protein/cytoplasmic dynein 2 heavy chain
PDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
32c5zhyA_



not modelled 65.7 13
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
33c5xbjA_



not modelled 61.8 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
34c4ut1A_



not modelled 61.7 18
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
35c2qihA_



not modelled 60.7 11
PDB header:cell adhesion
Chain: A: PDB Molecule:protein uspa1;
PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from moraxella2 catarrhalis
36c6o7ua_



not modelled 59.4 11
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
37d1g4us1



not modelled 58.6 12
Fold:Four-helical up-and-down bundle
Superfamily:Bacterial GAP domain
Family:Bacterial GAP domain
38c3cwgA_



not modelled 57.1 11
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
39c6gapB_



not modelled 54.5 13
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t3d reovirus sigma1 coiled coil tail and body
40c1kmiZ_



not modelled 53.8 10
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
41c2kbbA_



not modelled 49.8 13
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the talin rod domain, 1655-1822
42c6gaoC_



not modelled 47.0 9
PDB header:viral protein
Chain: C: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail and body
43d1st6a3



not modelled 45.1 14
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
44c2p22A_



not modelled 44.6 12
PDB header:transport protein
Chain: A: PDB Molecule:suppressor protein stp22 of temperature-sensitive alpha-
PDBTitle: structure of the yeast escrt-i heterotetramer core
45c5n76C_



not modelled 43.8 15
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
46c2qf4A_



not modelled 43.7 14
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
47c2yfaA_



not modelled 43.3 10
PDB header:receptor
Chain: A: PDB Molecule:methyl-accepting chemotaxis transducer;
PDBTitle: x-ray structure of mcps ligand binding domain in complex with malate
48c2dq3A_



not modelled 42.9 10
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of aq_298
49c5cwsJ_



not modelled 42.7 10
PDB header:protein transport
Chain: J: PDB Molecule:nucleoporin nup49;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
50d1ykhb1



not modelled 42.4 11
Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
51d1h9ma2



not modelled 41.4 23
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
52c5j65A_



not modelled 41.2 9
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry6aa;
PDBTitle: crystal structure of trypsin activated cry6aa
53c5zuvB_



not modelled 40.4 4
PDB header:viral protein, inhibitor
Chain: B: PDB Molecule:spike glycoprotein,spike glycoprotein,inhibitor ek1;
PDBTitle: crystal structure of the human coronavirus 229e hr1 motif in complex2 with pan-covs inhibitor ek1
54c3j6vL_



not modelled 40.0 18
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
55d1st6a5



not modelled 39.7 16
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
56c3ur1C_



not modelled 39.3 9
PDB header:immune system
Chain: C: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: the structure of a ternary complex between chea domains p4 and p5 with2 chew and with a truncated fragment of tm14, a chemoreceptor analog3 from thermotoga maritima.
57d1quua1



not modelled 39.1 11
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
58c2vs0B_



not modelled 39.1 13
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
59c3ghgI_



not modelled 38.3 14
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
60c4lwsA_



not modelled 37.6 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
61c4njlA_



not modelled 37.3 10
PDB header:viral protein
Chain: A: PDB Molecule:s protein;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus s22 protein fusion core
62c1ei3C_



not modelled 37.2 14
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
63d2uubl1



not modelled 36.9 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
64d1h9ra2



not modelled 36.5 20
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
65c1bf5A_



not modelled 34.9 8
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
66d1h9ma1



not modelled 34.5 23
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
67d1guta_



not modelled 34.4 16
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
68c2nrjA_



not modelled 34.2 11
PDB header:toxin
Chain: A: PDB Molecule:hbl b protein;
PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus
69c6grjG_



not modelled 34.1 10
PDB header:toxin
Chain: G: PDB Molecule:ahlb;
PDBTitle: structure of the ahlb pore of the tripartite alpha-pore forming toxin,2 ahl, from aeromonas hydrophila.
70c1zn1L_



not modelled 33.9 21
PDB header:biosynthetic/structural protein/rna
Chain: L: PDB Molecule:30s ribosomal protein s12;
PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-termination2 complex
71c4abxB_



not modelled 33.1 12
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
72c1wncE_



not modelled 32.6 20
PDB header:viral protein
Chain: E: PDB Molecule:e2 glycoprotein;
PDBTitle: crystal structure of the sars-cov spike protein fusion core
73c5yfpG_



not modelled 32.2 14
PDB header:exocytosis
Chain: G: PDB Molecule:exocyst complex component exo70;
PDBTitle: cryo-em structure of the exocyst complex
74c1quuA_



not modelled 31.5 14
PDB header:contractile protein
Chain: A: PDB Molecule:human skeletal muscle alpha-actinin 2;
PDBTitle: crystal structure of two central spectrin-like repeats from alpha-2 actinin
75c5j2lB_



not modelled 31.3 14
PDB header:de novo protein
Chain: B: PDB Molecule:protein design 2l4hc2_11;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
76c5c3lC_



not modelled 30.8 14
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin nup62;
PDBTitle: structure of the metazoan nup62.nup58.nup54 nucleoporin complex.
77c5x5bB_



not modelled 30.5 14
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
78c6nzkB_



not modelled 29.3 10
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
79c6ewyA_



not modelled 29.2 11
PDB header:structural protein
Chain: A: PDB Molecule:peptidoglycan endopeptidase ripa;
PDBTitle: ripa peptidoglycan hydrolase (rv1477, mycobacterium tuberculosis) n-2 terminal domain
80c5yfpB_



not modelled 29.0 14
PDB header:exocytosis
Chain: B: PDB Molecule:exocyst complex component sec5;
PDBTitle: cryo-em structure of the exocyst complex
81c6cs2A_



not modelled 28.4 13
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
82d2qall1



not modelled 27.7 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
83c5ew5C_



not modelled 27.6 8
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
84c2bezC_



not modelled 27.2 11
PDB header:viral protein
Chain: C: PDB Molecule:e2 glycoprotein;
PDBTitle: structure of a proteolitically resistant core from the severe acute2 respiratory syndrome coronavirus s2 fusion protein
85d1i94l_



not modelled 27.1 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
86c2gl2B_



not modelled 27.1 11
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
87d1hcia4



not modelled 26.8 9
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
88c5i08A_



not modelled 26.5 14
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
89d2cp6a1



not modelled 26.2 23
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
90c5xlrC_



not modelled 25.9 14
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
91c4wsrA_



not modelled 24.7 18
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: the crystal structure of hemagglutinin form a/chicken/new york/14677-2 13/1998
92c5nugB_



not modelled 24.7 13
PDB header:motor protein
Chain: B: PDB Molecule:cytoplasmic dynein 1 heavy chain 1;
PDBTitle: motor domains from human cytoplasmic dynein-1 in the phi-particle2 conformation
93d1fr3a_



not modelled 24.6 18
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
94c3ghgK_



not modelled 23.8 8
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
95c2q13A_



not modelled 23.6 9
PDB header:protein transport
Chain: A: PDB Molecule:dcc-interacting protein 13 alpha;
PDBTitle: crystal structure of bar-ph domain of appl1
96c1cz5A_



not modelled 21.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:vcp-like atpase;
PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma)
97c1yvlB_



not modelled 21.8 9
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
98c5gasN_



not modelled 21.8 14
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
99c1bg1A_



not modelled 21.6 10
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
100c4iogD_



not modelled 21.3 11
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
101c5szsC_



not modelled 21.2 12
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
102c3qr8A_



not modelled 20.7 15
PDB header:viral protein
Chain: A: PDB Molecule:baseplate assembly protein v;
PDBTitle: crystal structure of the bacteriophage p2 membrane-piercing protein2 gpv
103c5cwsC_



not modelled 20.6 17
PDB header:protein transport
Chain: C: PDB Molecule:nucleoporin nsp1;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
104c5n9yB_



not modelled 20.3 13
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below