Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1970_(lprM)_2214131_2215264
DateMon Aug 5 13:25:07 BST 2019
Unique Job ID2a5a79517788612a
SequenceVRIGLTLVMI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.525 Y:43.342 Z:66.213
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 34%
130 residues ( 34% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
281 residues ( 75%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_



99.9 25
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_



99.9 19
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnE_



99.6 14
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnA_



99.6 14
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnD_



99.6 14
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnC_



99.6 14
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnB_



99.6 14
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnF_



99.6 14
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c1qu7A_



94.0 16
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
10c2wpqA_



91.3 6
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
11c2qf4A_



89.8 12
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
12c3g67A_



87.3 11
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
13d1eq1a_



85.7 15
Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
14c3zx6A_



85.4 16
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
15c3cwgA_



83.5 12
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
16c3lnrA_



83.5 12
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
17c2ch7A_



82.3 6
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
18c2j5uB_



78.2 15
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
19c1deqF_



78.0 8
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
20c4rh7A_



74.9 12
PDB header:motor protein
Chain: A: PDB Molecule:green fluorescent protein/cytoplasmic dynein 2 heavy chain
PDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
21c4tkoB_



not modelled 73.7 18
PDB header:membrane protein
Chain: B: PDB Molecule:emra;
PDBTitle: structure of the periplasmic adaptor protein emra
22c3vkhA_



not modelled 73.5 11
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
23c1deqO_



not modelled 73.0 15
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
24c5xbjA_



not modelled 71.2 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
25c2qihA_



not modelled 71.0 9
PDB header:cell adhesion
Chain: A: PDB Molecule:protein uspa1;
PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from moraxella2 catarrhalis
26c1kmiZ_



not modelled 67.7 12
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
27c5lp5F_



not modelled 64.6 22
PDB header:hydrolase/antibiotic
Chain: F: PDB Molecule:rod shape-determining protein (mrec);
PDBTitle: complex between penicillin-binding protein (pbp2) and mrec from2 helicobacter pylori
28c3ojaB_



not modelled 61.7 8
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
29c6gajA_



not modelled 61.7 10
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
30c3ghgI_



not modelled 61.6 5
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
31c5u0pU_



not modelled 61.4 16
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
32c2d4yA_



not modelled 60.3 14
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
33d1st6a4



not modelled 59.3 14
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
34c6b7nC_



not modelled 54.0 8
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
35c1bf5A_



not modelled 53.7 9
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
36c5cwsJ_



not modelled 53.2 10
PDB header:protein transport
Chain: J: PDB Molecule:nucleoporin nup49;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
37c1ei3E_



not modelled 46.8 10
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
38c1ei3C_



not modelled 46.5 9
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
39c5lskD_



not modelled 44.2 16
PDB header:cell cycle
Chain: D: PDB Molecule:kinetochore-associated protein dsn1 homolog;
PDBTitle: crystal structure of the human kinetochore mis12-cenp-c complex
40c4ut1A_



not modelled 43.8 11
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
41c3zbhC_



not modelled 43.7 8
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
42d1h9ra2



not modelled 42.3 32
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
43c5n76C_



not modelled 41.0 25
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
44c3gvmA_



not modelled 40.4 13
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
45d1st6a3



not modelled 39.8 14
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
46c6gapB_



not modelled 39.5 10
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t3d reovirus sigma1 coiled coil tail and body
47c3ghgK_



not modelled 39.2 17
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
48c4zzkA_



not modelled 37.3 16
PDB header:motor protein
Chain: A: PDB Molecule:basal-body rod modification protein flgd;
PDBTitle: crystal structure of truncated flgd (monoclinic form) from the human2 pathogen helicobacter pylori
49c4abxB_



not modelled 36.1 12
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
50d1ykhb1



not modelled 35.7 11
Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
51d1h9ma2



not modelled 35.4 36
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
52c5yfpG_



not modelled 34.7 13
PDB header:exocytosis
Chain: G: PDB Molecule:exocyst complex component exo70;
PDBTitle: cryo-em structure of the exocyst complex
53c6e6aB_



not modelled 34.2 12
PDB header:protein binding
Chain: B: PDB Molecule:inclusion membrane protein a;
PDBTitle: triclinic crystal form of inca g144a point mutant
54c4lwsB_



not modelled 33.0 13
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
55d1h9ma1



not modelled 31.0 28
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
56c4wsrA_



not modelled 29.3 11
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: the crystal structure of hemagglutinin form a/chicken/new york/14677-2 13/1998
57c4iogD_



not modelled 28.5 10
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
58c2vs0B_



not modelled 28.5 13
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
59d1v5va1



not modelled 27.7 17
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
60c2nrjA_



not modelled 26.3 11
PDB header:toxin
Chain: A: PDB Molecule:hbl b protein;
PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus
61c6ewyA_



not modelled 26.2 9
PDB header:structural protein
Chain: A: PDB Molecule:peptidoglycan endopeptidase ripa;
PDBTitle: ripa peptidoglycan hydrolase (rv1477, mycobacterium tuberculosis) n-2 terminal domain
62c4modB_



not modelled 25.4 17
PDB header:viral protein
Chain: B: PDB Molecule:hr1 of s protein, linker, hr2 of s protein;
PDBTitle: structure of the mers-cov fusion core
63c5j65A_



not modelled 25.0 16
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry6aa;
PDBTitle: crystal structure of trypsin activated cry6aa
64c3c12A_



not modelled 24.8 11
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
65c5j2lB_



not modelled 24.8 17
PDB header:de novo protein
Chain: B: PDB Molecule:protein design 2l4hc2_11;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
66c2ieqC_



not modelled 22.7 10
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
67d2vzsa2



not modelled 22.5 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
68c4wa0A_



not modelled 21.3 19
PDB header:cell adhesion
Chain: A: PDB Molecule:possible adhesin;
PDBTitle: the structure of a possible adhesin c-terminal domain from2 caldicellulosiruptor kronotskyensis
69c6grjG_



not modelled 21.2 18
PDB header:toxin
Chain: G: PDB Molecule:ahlb;
PDBTitle: structure of the ahlb pore of the tripartite alpha-pore forming toxin,2 ahl, from aeromonas hydrophila.
70d1wosa1



not modelled 20.9 21
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
71c1qoyA_



not modelled 19.9 12
PDB header:toxin
Chain: A: PDB Molecule:hemolysin e;
PDBTitle: e.coli hemolysin e (hlye, clya, shea)
72c3pe0B_



not modelled 19.9 11
PDB header:structural protein
Chain: B: PDB Molecule:plectin;
PDBTitle: structure of the central region of the plakin domain of plectin
73c1yvlB_



not modelled 19.8 9
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
74c5zuvB_



not modelled 19.6 19
PDB header:viral protein, inhibitor
Chain: B: PDB Molecule:spike glycoprotein,spike glycoprotein,inhibitor ek1;
PDBTitle: crystal structure of the human coronavirus 229e hr1 motif in complex2 with pan-covs inhibitor ek1
75d1hcia4



not modelled 19.6 11
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
76c5gasN_



not modelled 18.5 8
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
77c3bt6B_



not modelled 18.5 11
PDB header:viral protein
Chain: B: PDB Molecule:influenza b hemagglutinin (ha);
PDBTitle: crystal structure of influenza b virus hemagglutinin
78c5nmoA_



not modelled 18.3 12
PDB header:cell cycle
Chain: A: PDB Molecule:chromosome partition protein smc,chromosome partition
PDBTitle: structure of the bacillus subtilis smc joint domain
79c5lskA_



not modelled 18.0 13
PDB header:cell cycle
Chain: A: PDB Molecule:protein mis12 homolog;
PDBTitle: crystal structure of the human kinetochore mis12-cenp-c complex
80c1cz5A_



not modelled 18.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:vcp-like atpase;
PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma)
81c4lwsA_



not modelled 17.7 9
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
82c4xa3A_



not modelled 17.2 14
PDB header:motor protein
Chain: A: PDB Molecule:gp7-myh7(1361-1425)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 2 of myh7
83c2iakA_



not modelled 17.0 8
PDB header:cell adhesion
Chain: A: PDB Molecule:bullous pemphigoid antigen 1, isoform 5;
PDBTitle: crystal structure of a protease resistant fragment of the plakin2 domain of bullous pemphigoid antigen1 (bpag1)
84c3j6vL_



not modelled 17.0 19
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
85c5szsC_



not modelled 16.7 15
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
86c1ha0A_



not modelled 16.7 11
PDB header:viral protein
Chain: A: PDB Molecule:protein (hemagglutinin precursor);
PDBTitle: hemagglutinin precursor ha0
87c5wrgB_



not modelled 16.5 19
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
88c5zhyA_



not modelled 16.4 23
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
89c6ezvX_



not modelled 16.4 9
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
90c2gl2B_



not modelled 16.3 11
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
91c4fiuC_



not modelled 16.0 10
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin;
PDBTitle: the structure of hemagglutinin of h16 subtype influenza virus with2 v327g mutation
92d1t01a1



not modelled 15.9 14
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
93c2q13A_



not modelled 15.9 8
PDB header:protein transport
Chain: A: PDB Molecule:dcc-interacting protein 13 alpha;
PDBTitle: crystal structure of bar-ph domain of appl1
94d2uubl1



not modelled 15.7 29
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
95c1v5vA_



not modelled 15.5 20
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution
96c3qr8A_



not modelled 15.2 10
PDB header:viral protein
Chain: A: PDB Molecule:baseplate assembly protein v;
PDBTitle: crystal structure of the bacteriophage p2 membrane-piercing protein2 gpv
97c2wr2B_



not modelled 15.1 12
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin;
PDBTitle: structure of influenza h2 avian hemagglutinin with avian2 receptor
98c4e40A_



not modelled 15.1 11
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the haptoglobin-hemoglobin receptor of trypanosoma congolense
99c6cfzD_



not modelled 14.9 10
PDB header:nuclear protein
Chain: D: PDB Molecule:duo1;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface

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Transmembrane helix prediction 

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