Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1971_(mce3F)_2215265_2216578
DateMon Aug 5 13:25:07 BST 2019
Unique Job ID183c01019a338b91
SequenceMLHLPRRVIV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.985 Y:39.059 Z:68.181
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 30%
132 residues ( 30% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
279 residues ( 64%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_



99.9 27
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_



99.9 23
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnB_



99.5 14
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnD_



99.5 14
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnF_



99.5 14
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnC_



99.5 14
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnE_



99.5 14
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnA_



99.5 14
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c1qu7A_



94.7 17
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
10c3g67A_



84.3 6
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
11c3cwgA_



83.6 12
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
12d1eq1a_



81.5 10
Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
13c2j5uB_



80.9 20
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
14c3zx6A_



79.1 16
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
15c2ch7A_



78.6 11
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
16c2qf4A_



78.5 19
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
17d1st6a4



78.4 17
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
18c5xbjA_



75.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
19c2yfaA_



73.1 13
PDB header:receptor
Chain: A: PDB Molecule:methyl-accepting chemotaxis transducer;
PDBTitle: x-ray structure of mcps ligand binding domain in complex with malate
20c2ieqC_



72.2 7
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
21c3lnrA_



not modelled 66.9 9
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
22c6e6aB_



not modelled 65.5 14
PDB header:protein binding
Chain: B: PDB Molecule:inclusion membrane protein a;
PDBTitle: triclinic crystal form of inca g144a point mutant
23c2vs0B_



not modelled 59.8 15
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
24c6ezvX_



not modelled 59.2 9
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
25c4abxB_



not modelled 58.4 15
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
26c5zhyA_



not modelled 58.1 8
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
27c1kmiZ_



not modelled 55.3 16
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
28c6b7nC_



not modelled 53.6 12
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
29c6gy6Q_



not modelled 50.5 9
PDB header:toxin
Chain: Q: PDB Molecule:xaxa;
PDBTitle: xaxab pore complex from xenorhabdus nematophila
30c1deqF_



not modelled 50.0 8
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
31c2dnxA_



not modelled 45.6 15
PDB header:transport protein
Chain: A: PDB Molecule:syntaxin-12;
PDBTitle: solution structure of rsgi ruh-063, an n-terminal domain of2 syntaxin 12 from human cdna
32c5lp5F_



not modelled 44.7 23
PDB header:hydrolase/antibiotic
Chain: F: PDB Molecule:rod shape-determining protein (mrec);
PDBTitle: complex between penicillin-binding protein (pbp2) and mrec from2 helicobacter pylori
33c4ut1A_



not modelled 39.7 13
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
34c4iogD_



not modelled 34.7 11
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
35c5u0pU_



not modelled 32.5 14
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
36d1h9ra2



not modelled 32.2 16
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
37c3ghgK_



not modelled 32.1 7
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
38c5n76C_



not modelled 31.3 20
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
39c1deqO_



not modelled 28.0 7
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
40d1h9ma2



not modelled 26.8 28
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
41c5wwlN_



not modelled 26.1 15
PDB header:cell cycle
Chain: N: PDB Molecule:kinetochore protein nnf1;
PDBTitle: crystal structure of the schizogenesis pombe kinetochore mis12c2 subcomplex
42c2l5bA_



not modelled 25.7 17
PDB header:apoptosis
Chain: A: PDB Molecule:activator of apoptosis harakiri;
PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles
43c2wpqA_



not modelled 24.7 8
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
44c5szsC_



not modelled 24.3 8
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
45c2kbbA_



not modelled 23.9 14
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the talin rod domain, 1655-1822
46c1ei3E_



not modelled 23.8 7
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
47c3ojaB_



not modelled 23.2 14
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
48c2y75F_



not modelled 22.0 21
PDB header:transcription
Chain: F: PDB Molecule:hth-type transcriptional regulator cymr;
PDBTitle: the structure of cymr (yrzc) the global cysteine regulator of b.2 subtilis
49c1bf5A_



not modelled 21.6 10
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
50c3ghgI_



not modelled 20.9 10
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
51c5wrgB_



not modelled 20.5 12
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
52c3gvmA_



not modelled 19.4 9
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
53c3j6vL_



not modelled 18.5 19
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
54d1h9ma1



not modelled 18.5 20
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
55c5dfzA_



not modelled 18.3 11
PDB header:transferase
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 38;
PDBTitle: structure of vps34 complex ii from s. cerevisiae.
56d2uubl1



not modelled 17.6 34
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
57c4njlA_



not modelled 17.5 13
PDB header:viral protein
Chain: A: PDB Molecule:s protein;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus s22 protein fusion core
58c4n21E_



not modelled 17.4 12
PDB header:viral protein
Chain: E: PDB Molecule:gp2 ectodomain;
PDBTitle: crystal structure of the gp2 core domain from the california academy2 of science virus
59d2j0oa1



not modelled 17.4 9
Fold:IpaD-like
Superfamily:IpaD-like
Family:IpaD-like
60c2j0oA_



not modelled 17.4 9
PDB header:cell invasion
Chain: A: PDB Molecule:invasin ipad;
PDBTitle: shigella flexneri ipad
61d1quua1



not modelled 17.0 13
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
62c5i08A_



not modelled 16.9 11
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
63c6gajA_



not modelled 16.8 12
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
64c2mpnA_



not modelled 16.7 23
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
65c2mpnB_



not modelled 16.7 23
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
66c5x5bB_



not modelled 16.4 11
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
67c4lwsA_



not modelled 16.2 11
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
68c3ur1C_



not modelled 16.2 8
PDB header:immune system
Chain: C: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: the structure of a ternary complex between chea domains p4 and p5 with2 chew and with a truncated fragment of tm14, a chemoreceptor analog3 from thermotoga maritima.
69c5gasN_



not modelled 16.0 15
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
70d1s94a_



not modelled 15.7 11
Fold:STAT-like
Superfamily:t-snare proteins
Family:t-snare proteins
71c1s94A_



not modelled 15.7 11
PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:s-syntaxin;
PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei
72c2d4yA_



not modelled 15.7 12
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
73d1szia_



not modelled 14.8 8
Fold:Four-helical up-and-down bundle
Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
74c2wr2B_



not modelled 14.4 5
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin;
PDBTitle: structure of influenza h2 avian hemagglutinin with avian2 receptor
75c5cwsJ_



not modelled 14.3 7
PDB header:protein transport
Chain: J: PDB Molecule:nucleoporin nup49;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
76c3c12A_



not modelled 14.3 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
77c1zn1L_



not modelled 14.0 28
PDB header:biosynthetic/structural protein/rna
Chain: L: PDB Molecule:30s ribosomal protein s12;
PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-termination2 complex
78d1wa8a1



not modelled 13.9 17
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
79d1i94l_



not modelled 13.8 34
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
80c1yvlB_



not modelled 13.4 8
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
81c4wsrA_



not modelled 13.3 3
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: the crystal structure of hemagglutinin form a/chicken/new york/14677-2 13/1998
82d1hcia4



not modelled 13.2 7
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
83c1bg1A_



not modelled 13.0 13
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
84c3vkhA_



not modelled 13.0 10
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
85c4qkvB_



not modelled 12.8 16
PDB header:transcription
Chain: B: PDB Molecule:polymerase i and transcript release factor;
PDBTitle: crystal structure of the mouse cavin1 hr1 domain
86c1zvaA_



not modelled 12.3 14
PDB header:viral protein
Chain: A: PDB Molecule:e2 glycoprotein;
PDBTitle: a structure-based mechanism of sars virus membrane fusion
87d2cu6a1



not modelled 12.3 9
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
88d2j9ua1



not modelled 12.3 11
Fold:Four-helical up-and-down bundle
Superfamily:VPS28 C-terminal domain-like
Family:VPS28 C-terminal domain-like
89c6gy8B_



not modelled 12.2 14
PDB header:toxin
Chain: B: PDB Molecule:xaxa;
PDBTitle: crystal structure of xaxa from xenorhabdus nematophila
90c6cfzG_



not modelled 11.9 9
PDB header:nuclear protein
Chain: G: PDB Molecule:hsk3;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
91c1ei3C_



not modelled 11.7 9
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
92c3euhB_



not modelled 11.7 10
PDB header:cell cycle
Chain: B: PDB Molecule:chromosome partition protein mukf;
PDBTitle: crystal structure of the muke-mukf complex
93c6gapB_



not modelled 11.6 15
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t3d reovirus sigma1 coiled coil tail and body
94c2j9wB_



not modelled 11.6 10
PDB header:protein transport
Chain: B: PDB Molecule:vps28-prov protein;
PDBTitle: structural insight into the escrt-i-ii link and its role in mvb2 trafficking
95c1h9sA_



not modelled 11.3 16
PDB header:transcription regulator
Chain: A: PDB Molecule:molybdenum transport protein mode;
PDBTitle: molybdate bound complex of dimop domain of mode from e.coli
96c4lwsB_



not modelled 11.2 11
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
97c4f7gB_



not modelled 10.9 13
PDB header:cell adhesion
Chain: B: PDB Molecule:talin-1;
PDBTitle: crystal structure of talin autoinhibition complex
98c1eboE_



not modelled 10.7 15
PDB header:viral protein
Chain: E: PDB Molecule:ebola virus envelope protein chimera consisting
PDBTitle: crystal structure of the ebola virus membrane-fusion2 subunit, gp2, from the envelope glycoprotein ectodomain
99c4mc5C_



not modelled 10.5 4
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of a subtype h18 hemagglutinin homologue from2 a/flat-faced bat/peru/033/2010 (h18n11)

Binding site prediction 

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below