Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1972_(-)_2216600_2217175
DateMon Aug 5 13:25:07 BST 2019
Unique Job ID58369188165855c0
SequenceMSVAVDSDAE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.891 Y:40.100 Z:35.308
Model (left) based on template c5cnlA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
Confidence and coverage
Confidence: 97.3% Coverage: 62%
118 residues ( 62% of your sequence) have been modelled with 97.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5cnlA_
97.3 10
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
2c3a76B_
97.2 15
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
3c5d9rA_
97.2 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
4c3wz4F_
97.1 15
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
5d3b8la1
97.0 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
6d2ux0a1
97.0 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
7c3wz3A_
96.7 16
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
8d3d9ra1
96.6 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
9c4i4kB_
96.6 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
10d2rfra1
96.6 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
11d1hkxa_
96.5 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
12c5u9oD_
96.3 8
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
13d3stda_
96.1 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
14d3cu3a1
96.1 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
15d3ef8a1
96.0 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
16c3gzrA_
96.0 8
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
17c3h51A_
95.8 10
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
18d2f86b1
95.7 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
19c3robC_
95.7 7
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
20d1idpa_
95.6 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
21c4ovmE_
not modelled 95.5 10
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
22d3ebya1
not modelled 95.4 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
23d2rgqa1
not modelled 95.4 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
24c5ig4A_
not modelled 95.1 11
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
25d2chca1
not modelled 95.0 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
26c5ig5E_
not modelled 94.9 10
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
27c4lehA_
not modelled 94.8 5
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
28c4nhfF_
not modelled 94.7 10
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
29c4gb5A_
not modelled 94.6 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
30d3b7ca1
not modelled 93.8 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
31d2b1xb1
not modelled 93.4 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
32d2cc3a1
not modelled 93.2 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
33c5i97C_
not modelled 93.0 9
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
34c6of9G_
not modelled 92.9 9
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
35c3f7sA_
not modelled 92.6 11
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
36d3ejva1
not modelled 92.4 19
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
37c3soyA_
not modelled 91.8 7
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
38c3hx8A_
not modelled 91.1 11
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
39d2bhma1
not modelled 90.7 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
40c2bhmE_
not modelled 89.3 15
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
41d3blza1
not modelled 88.3 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
42c2gbxF_
not modelled 86.7 10
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
43d2r4ia1
not modelled 86.3 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
44c5ig0A_
not modelled 85.1 14
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
45c4hzbE_
not modelled 84.8 12
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
46c3k7cC_
not modelled 84.7 15
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
47d3cnxa1
not modelled 84.6 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
48c3bb9D_
not modelled 83.9 15
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
49c4o3vA_
not modelled 82.0 10
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
50c4meiA_
not modelled 80.7 15
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
51c6bjuD_
not modelled 79.6 15
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
52c3gwrA_
not modelled 78.6 13
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
53d3bb9a1
not modelled 78.5 21
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
54c2qguA_
not modelled 76.3 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
55c5uwaB_
not modelled 75.4 12
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
56d2owpa1
not modelled 73.4 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
57d3e99a1
not modelled 72.3 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
58c2rsxA_
not modelled 68.2 19
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
59c3ub1C_
not modelled 67.8 19
PDB header:transport protein
Chain: C: PDB Molecule:orf13-like protein;
PDBTitle: ntf2 like protein involved in plasmid conjugation
60c3fsdA_
not modelled 62.3 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
61c3fkaD_
not modelled 62.0 17
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
62c3kspA_
not modelled 57.1 12
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
63c4fczB_
not modelled 54.2 15
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
64d1vqqa1
not modelled 50.7 5
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
65c3dukD_
not modelled 47.1 11
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
66c4ce4i_
not modelled 45.1 7
PDB header:ribosome
Chain: I: PDB Molecule:mrpl9;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
67d2rcda1
not modelled 40.7 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
68c4ouqA_
not modelled 38.4 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
69c4orlA_
not modelled 36.4 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
70c1mwuA_
not modelled 33.9 7
PDB header:biosynthetic protein
Chain: A: PDB Molecule:penicillin-binding protein 2a;
PDBTitle: structure of methicillin acyl-penicillin binding protein 2a from2 methicillin resistant staphylococcus aureus strain 27r at 2.60 a3 resolution.
71c3ke7A_
not modelled 33.5 9
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
72c5ve9C_
not modelled 29.5 38
PDB header:protein binding
Chain: C: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
73d1v5ra1
not modelled 27.7 33
Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
74c4r4gA_
not modelled 26.8 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
75c6hwhB_
not modelled 20.7 16
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
76c2z8nB_
not modelled 19.6 42
PDB header:lyase
Chain: B: PDB Molecule:27.5 kda virulence protein;
PDBTitle: structural basis for the catalytic mechanism of phosphothreonine lyase
77d1ulib_
not modelled 19.0 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
78c5ts4A_
not modelled 17.6 19
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
79c3gzxB_
not modelled 17.0 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta;
PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356
80c2n6uA_
not modelled 16.9 29
PDB header:unknown function
Chain: A: PDB Molecule:astexin2-dc4;
PDBTitle: solution study of astexin2-dc4
81c5up5A_
not modelled 16.8 36
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
82c3hzpA_
not modelled 15.8 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
83d1ciya1
not modelled 15.3 21
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:delta-Endotoxin, C-terminal domain
84c3qk9B_
not modelled 13.2 14
PDB header:protein transport
Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3
85c3i0uA_
not modelled 12.0 36
PDB header:lyase
Chain: A: PDB Molecule:phosphothreonine lyase ospf;
PDBTitle: structure of the type iii effector/phosphothreonine lyase ospf from2 shigella flexneri
86d1wqlb1
not modelled 10.8 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
87c6f0kA_
not modelled 10.7 10
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
88c2pg1J_
not modelled 10.5 44
PDB header:structural protein
Chain: J: PDB Molecule:cytoplasmic dynein 1 intermediate chain 2;
PDBTitle: structural analysis of a cytoplasmic dynein light chain-2 intermediate chain complex
89c2pg1L_
not modelled 10.5 44
PDB header:structural protein
Chain: L: PDB Molecule:cytoplasmic dynein 1 intermediate chain 2;
PDBTitle: structural analysis of a cytoplasmic dynein light chain-2 intermediate chain complex
90c1zeqX_
not modelled 10.5 10
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
91d1dlca1
not modelled 9.9 38
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:delta-Endotoxin, C-terminal domain
92c1ciyA_
not modelled 9.8 21
PDB header:toxin
Chain: A: PDB Molecule:cryia(a);
PDBTitle: insecticidal toxin: structure and channel formation
93d1ji6a1
not modelled 9.7 15
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:delta-Endotoxin, C-terminal domain
94c5kpeA_
not modelled 9.6 16
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664
95d2cw9a1
not modelled 9.4 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
96c1i5pA_
not modelled 9.2 18
PDB header:toxin
Chain: A: PDB Molecule:pesticidial crystal protein cry2aa;
PDBTitle: insecticidal crystal protein cry2aa
97d2gxfa1
not modelled 8.4 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
98c3efyB_
not modelled 8.3 24
PDB header:cell cycle
Chain: B: PDB Molecule:cif (cell cycle inhibiting factor);
PDBTitle: structure of the cyclomodulin cif from pathogenic2 escherichia coli
99c6owkA_
not modelled 8.0 14
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry1be, cry1k-like protein
PDBTitle: crystal structure of a bacillus thuringiensis cry1b.867 tryptic core2 variant

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Transmembrane helix prediction 

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