Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1974_(-)_2217667_2218044
DateMon Aug 5 13:25:07 BST 2019
Unique Job IDba1fa0226f2c260e
SequenceVQRQSLMPQQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:13.472 Y:13.954 Z:27.098
Model (left) based on template c2xglB_
Top template information
PDB header:antibiotic
Chain: B: PDB Molecule:colicin-m immunity protein;
PDBTitle: the x-ray structure of the escherichia coli colicin m immunity protein2 demonstrates the presence of a disulphide bridge, which is3 functionally essential
Confidence and coverage
Confidence: 33.0% Coverage: 13%
16 residues ( 13% of your sequence) have been modelled with 33.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2xglB_



33.0 25
PDB header:antibiotic
Chain: B: PDB Molecule:colicin-m immunity protein;
PDBTitle: the x-ray structure of the escherichia coli colicin m immunity protein2 demonstrates the presence of a disulphide bridge, which is3 functionally essential
2c4evxA_



31.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative phage endolysin;
PDBTitle: crystal structure of putative phage endolysin from s. enterica
3c2lqvA_



28.9 38
PDB header:protein transport
Chain: A: PDB Molecule:protein yebf;
PDBTitle: yebf
4c1x5bA_



17.0 14
PDB header:protein binding
Chain: A: PDB Molecule:signal transducing adaptor molecule 2;
PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2
5d2pmra1



16.8 27
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:AF1782-like
Family:AF1782-like
6c3zyqA_



16.4 17
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.48 a3 resolution
7d1dvpa1



15.3 10
Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
8d1nh2b_



14.5 24
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
9d1nvpb_



13.0 27
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
10c1nvpB_



13.0 27
PDB header:transcription/dna
Chain: B: PDB Molecule:transcription initiation factor iia alpha chain;
PDBTitle: human tfiia/tbp/dna complex
11c4rwrB_



12.2 33
PDB header:viral protein
Chain: B: PDB Molecule:stage ii sporulation protein d;
PDBTitle: 2.1 angstrom crystal structure of stage ii sporulation protein d from2 bacillus anthracis
12c1spfA_



11.7 78
PDB header:lipoprotein(surface film)
Chain: A: PDB Molecule:pulmonary surfactant-associated polypeptide c;
PDBTitle: the nmr structure of the pulmonary surfactant-associated2 polypeptide sp-c in an apolar solvent contains a valyl-3 rich alpha-helix
13d2oo2a1



10.4 7
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:AF1782-like
Family:AF1782-like
14c2la3A_



10.3 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain
15c4k90A_



9.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:extracellular metalloproteinase mep;
PDBTitle: extracellular metalloproteinase from aspergillus
16d1oqya2



9.4 36
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
17c5i1tA_



9.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:stage ii sporulation protein d;
PDBTitle: 2.6 angstrom resolution crystal structure of stage ii sporulation2 protein d (spoiid) from clostridium difficile in complex with3 triacetylchitotriose
18c1qoyA_



9.2 17
PDB header:toxin
Chain: A: PDB Molecule:hemolysin e;
PDBTitle: e.coli hemolysin e (hlye, clya, shea)
19c3hdeA_



8.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of full-length endolysin r21 from phage 21
20c3j9oJ_



7.7 24
PDB header:structural protein
Chain: J: PDB Molecule:intracellular growth locus protein b;
PDBTitle: cryoem structure of a type vi secretion system
21c2d56A_



not modelled 7.5 50
PDB header:antibiotic
Chain: A: PDB Molecule:asabf;
PDBTitle: solution structure of asabf, antibacterial peptide isolated2 from a nematode, ascaris suum
22d1m0wa1



not modelled 7.4 24
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Eukaryotic glutathione synthetase, substrate-binding domain
23c2f95B_



not modelled 7.3 53
PDB header:membrane protein
Chain: B: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: m intermediate structure of sensory rhodopsin ii/transducer complex in2 combination with the ground state structure
24c2uuvC_



not modelled 7.0 25
PDB header:transferase
Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase;
PDBTitle: alkyldihydroxyacetonephosphate synthase in p1
25c2f93B_



not modelled 6.9 39
PDB header:membrane protein
Chain: B: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: k intermediate structure of sensory rhodopsin ii/transducer complex in2 combination with the ground state structure
26d2f93b1



not modelled 6.9 39
Fold:Transmembrane helix hairpin
Superfamily:Htr2 transmembrane domain-like
Family:Htr2 transmembrane domain-like
27d1dv0a_



not modelled 6.6 31
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
28c3vocA_



not modelled 6.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:beta/alpha-amylase;
PDBTitle: crystal structure of the catalytic domain of beta-amylase from2 paenibacillus polymyxa
29c5nfvA_



not modelled 6.0 35
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: crystal structure of catalytically inactive fncas12 mutant bound to an2 r-loop structure containing a pre-crrna mimic and full-length dna3 target
30c5ix5A_



not modelled 6.0 50
PDB header:antibiotic
Chain: A: PDB Molecule:antibacterial factor-related peptide 2;
PDBTitle: nmr structure of antibacterial factor-2
31c5b2oA_



not modelled 5.6 22
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of francisella novicida cas9 in complex with sgrna2 and target dna (tgg pam)
32c5n8nR_



not modelled 5.6 18
PDB header:structural protein
Chain: R: PDB Molecule:evpb family type vi secretion protein;
PDBTitle: contracted sheath of a pseudomonas aeruginosa type six secretion2 system consisting of tssb1 and tssc1
33c6ijfA_



not modelled 5.5 19
PDB header:antitoxin
Chain: A: PDB Molecule:tai4;
PDBTitle: crystal structure of the type vi effector-immunity complex (tae4-tai4)2 from agrobacterium tumefaciens
34c3rafA_



not modelled 5.4 26
PDB header:isomerase/dna/antibiotic
Chain: A: PDB Molecule:dna topoisomerase 4 subunit a;
PDBTitle: quinazolinedione-dna cleavage complex of type iv topoisomerase from s.2 pneumoniae
35c4w8yA_



not modelled 5.4 15
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr2;
PDBTitle: structure of full length cmr2 from pyrococcus furiosus (manganese2 bound form)
36c1hgzA_



not modelled 5.4 50
PDB header:virus
Chain: A: PDB Molecule:ph75 inovirus major coat protein;
PDBTitle: filamentous bacteriophage ph75
37c1hgvA_



not modelled 5.4 50
PDB header:virus
Chain: A: PDB Molecule:ph75 inovirus major coat protein;
PDBTitle: filamentous bacteriophage ph75
38c5mxnA_



not modelled 5.2 22
PDB header:transport protein
Chain: A: PDB Molecule:type vi secretion protein;
PDBTitle: atomic model of the vipa/vipb/hcp, the type six secretion system non-2 contractile sheath-tube of vibrio cholerae from cryo-em

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