Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1980c_(mpt64)_2223351_2224037
DateMon Aug 5 13:25:08 BST 2019
Unique Job IDf927be7edccf2c59
SequenceVRIKIFMLVT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.951 Y:59.760 Z:50.495
Model (left) based on template c2hhiA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:immunogenic protein mpt64;
PDBTitle: the solution structure of antigen mpt64 from mycobacterium2 tuberculosis defines a novel class of beta-grasp proteins
Confidence and coverage
Confidence:100.0% Coverage: 89%
204 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2hhiA_



100.0 100
PDB header:unknown function
Chain: A: PDB Molecule:immunogenic protein mpt64;
PDBTitle: the solution structure of antigen mpt64 from mycobacterium2 tuberculosis defines a novel class of beta-grasp proteins
2c5jenA_



100.0 14
PDB header:hydrolase/hydrolase receptor
Chain: A: PDB Molecule:anti-sigma-v factor rsiv;
PDBTitle: crystal structure of the anti-sigma factor rsiv bound to lysozyme
3c3cygA_



100.0 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from2 fervidobacterium nodosum rt17-b1
4c4e72A_



100.0 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3298 family protein (pa4972) from2 pseudomonas aeruginosa pao1 at 2.15 a resolution
5c3s5tA_



100.0 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:duf3298 family protein;
PDBTitle: crystal structure of a member of duf3298 family (bf2082) from2 bacteroides fragilis nctc 9343 at 2.30 a resolution
6d2c1ia2



55.4 20
Fold:Peptidoglycan deacetylase N-terminal noncatalytic region
Superfamily:Peptidoglycan deacetylase N-terminal noncatalytic region
Family:Peptidoglycan deacetylase N-terminal noncatalytic region
7c4ot1A_



42.2 17
PDB header:viral protein/immune system
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: structural basis for the recognition of human cytomegalovirus2 glycoprotein b by the neutralizing human antibody sm5-1
8c4qtqA_



27.7 15
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:xac2610 protein;
PDBTitle: structure of a xanthomonas type iv secretion system related protein
9d2g5gx1



21.7 12
Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:ChaN-like
10d2guma1



20.9 14
Fold:Viral glycoprotein ectodomain-like
Superfamily:Viral glycoprotein ectodomain-like
Family:Glycoprotein B-like
11c3nw8B_



20.3 14
PDB header:viral protein
Chain: B: PDB Molecule:envelope glycoprotein b;
PDBTitle: glycoprotein b from herpes simplex virus type 1, y179s mutant, high-ph
12c2lnzA_



19.9 29
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-like protein mdy2;
PDBTitle: solution structure of the get5 carboxyl domain from s. cerevisiae
13c6bm8A_



19.9 14
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
14d1hf2a2



17.0 18
Fold:Cell-division inhibitor MinC, N-terminal domain
Superfamily:Cell-division inhibitor MinC, N-terminal domain
Family:Cell-division inhibitor MinC, N-terminal domain
15c5v2sA_



16.9 14
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
16c5c6tA_



15.8 16
PDB header:viral protein/immue system
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of hcmv glycoprotein b in complex with 1g2 fab
17d3c9fa1



15.4 15
Fold:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Superfamily:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Family:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
18c5efvC_



14.1 11
PDB header:structural protein
Chain: C: PDB Molecule:phi eta orf 56-like protein;
PDBTitle: the host-recognition device of staphylococcus aureus phage phi11
19c3fvcA_



13.6 10
PDB header:viral protein
Chain: A: PDB Molecule:glycoprotein gp110;
PDBTitle: crystal structure of a trimeric variant of the epstein-barr virus2 glycoprotein b
20c2c1iA_



13.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase;
PDBTitle: structure of streptococcus pneumoniae peptidoglycan deacetylase2 (sppgda) d 275 n mutant.
21d2czra1



not modelled 12.6 18
Fold:Restriction endonuclease-like
Superfamily:TBP-interacting protein-like
Family:TBP-interacting protein-like
22c5lngB_



not modelled 11.6 20
PDB header:cell adhesion
Chain: B: PDB Molecule:putative fml fimbrial adhesin fmld;
PDBTitle: lectin domain of e. coli f9 pilus adhesin fmlh
23c3acgA_



not modelled 11.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:beta-1,4-endoglucanase;
PDBTitle: crystal structure of carbohydrate-binding module family 28 from2 clostridium josui cel5a in complex with cellobiose
24c3vejB_



not modelled 9.9 33
PDB header:protein binding
Chain: B: PDB Molecule:ubiquitin-like protein mdy2;
PDBTitle: crystal structure of the get5 carboxyl domain from s. cerevisiae
25c6ax5A_



not modelled 9.4 14
PDB header:nuclear protein
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: rpt1 region of ini1/snf5/smarcb1_human - swi/snf-related matrix-2 associated actin-dependent regulator of chromatin subfamily b member3 1.
26c2amjD_



not modelled 9.2 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:modulator of drug activity b;
PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7
27c3n1tE_



not modelled 8.5 12
PDB header:hydrolase
Chain: E: PDB Molecule:hit-like protein hint;
PDBTitle: crystal structure of the h101a mutant echint gmp complex
28c6escA_



not modelled 7.8 16
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of pseudorabies virus glycoprotein b
29d2guya1



not modelled 7.2 33
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
30d2aaaa1



not modelled 7.1 50
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
31c3c9fB_



not modelled 7.1 15
PDB header:hydrolase
Chain: B: PDB Molecule:5'-nucleotidase;
PDBTitle: crystal structure of 5'-nucleotidase from candida albicans sc5314
32d1w6ga3



not modelled 6.9 13
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
33d1w2za3



not modelled 6.9 22
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
34d1uwwa_



not modelled 6.6 13
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 28 carbohydrate binding module, CBM28
35c2qasA_



not modelled 6.5 26
PDB header:hydrolase activator
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of caulobacter crescentus sspb ortholog
36d1poia_



not modelled 5.9 40
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
37c2hp7A_



not modelled 5.4 17
PDB header:signaling protein
Chain: A: PDB Molecule:flagellar motor switch protein flim;
PDBTitle: structure of flim provides insight into assembly of the2 switch complex in the bacterial flagella motor
38d2hq4a1



not modelled 5.4 33
Fold:PH1570-like
Superfamily:PH1570-like
Family:PH1570-like
39c5yi8B_



not modelled 5.3 67
PDB header:cell cycle
Chain: B: PDB Molecule:pon peptide from partner of numb;
PDBTitle: crystal structure of drosophila numb ptb domain and pon peptide2 complex
40c5mzyA_



not modelled 5.3 33
PDB header:lyase
Chain: A: PDB Molecule:glutaconate coa-transferase family, subunit a;
PDBTitle: crystal structure of the decarboxylase aiba/aibb in complex with a2 possible transition state analog
41c3waiA_



not modelled 5.3 24
PDB header:transferase, transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, transmembrane
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (afaglb-l, o29867_arcfu) from archaeoglobus3 fulgidus as a mbp fusion
42c3e79A_



not modelled 5.2 22
PDB header:tpp binding protein
Chain: A: PDB Molecule:high affinity transport system protein p37;
PDBTitle: structure determination of the cancer-associated mycoplasma2 hyorhinis protein mh-p37
43d1ex0a2



not modelled 5.2 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Transglutaminase, two C-terminal domains
Family:Transglutaminase, two C-terminal domains
44d1u7ba1



not modelled 5.2 17
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
45c4yk8A_



not modelled 5.2 16
PDB header:protein transport
Chain: A: PDB Molecule:meiotically up-regulated gene 66 protein;
PDBTitle: crystal structure of the atg101-atg13 complex from fission yeast

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below