Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1982A_(RVBD1982A)_2225849_2226109
DateMon Aug 5 13:25:08 BST 2019
Unique Job IDbe3b779c37a42b81
SequenceVALNIKDPEV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.675 Y:27.531 Z:39.664
Model (left) based on template c2k5jB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
Confidence and coverage
Confidence: 55.9% Coverage: 47%
40 residues ( 47% of your sequence) have been modelled with 55.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k5jB_



55.9 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
2c6gtsC_



44.7 15
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
3c6ajnF_



42.5 15
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
4c6a7vU_



40.6 42
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
5c2kelB_



39.8 33
PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
6c4ui9E_



36.4 24
PDB header:cell cycle
Chain: E: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: atomic structure of the human anaphase-promoting complex
7c2q2kB_



28.7 31
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
8d1y9ba1



28.4 18
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
9c3zifM_



25.1 67
PDB header:virus
Chain: M: PDB Molecule:penton protein;
PDBTitle: cryo-em structures of two intermediates provide insight into2 adenovirus assembly and disassembly
10c2q2kA_



24.4 31
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
11c2k9iB_



23.6 19
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
12c2ov2O_



21.1 25
PDB header:protein binding/transferase
Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4;
PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4)
13c2rt4A_



20.9 86
PDB header:de novo protein
Chain: A: PDB Molecule:af.2a1;
PDBTitle: nmr structure of designed protein, af.2a1, (ensembles)
14c4rg9S_



19.7 40
PDB header:protein binding
Chain: S: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: crystal structure of apc3-apc16 complex (selenomethionine derivative)
15c4rg6S_



19.6 40
PDB header:protein binding
Chain: S: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: crystal structure of apc3-apc16 complex
16c2odbB_



19.3 38
PDB header:protein binding
Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6;
PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6)
17c5fmzB_



17.9 13
PDB header:transcription
Chain: B: PDB Molecule:rna-directed rna polymerase catalytic subunit;
PDBTitle: crystal structure of influenza b polymerase with bound 5' vrna
18c4wsaB_



17.7 13
PDB header:transferase/rna
Chain: B: PDB Molecule:rna-directed rna polymerase catalytic subunit;
PDBTitle: crystal structure of influenza b polymerase bound to the vrna promoter2 (flub1 form)
19c1e0aB_



17.4 50
PDB header:signalling protein/kinase
Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha;
PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase
20c1t3mA_



15.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
21d2a4da1



not modelled 15.6 33
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
22c1ceeB_



not modelled 15.5 50
PDB header:structural protein regulation
Chain: B: PDB Molecule:wiskott-aldrich syndrome protein wasp;
PDBTitle: solution structure of cdc42 in complex with the gtpase2 binding domain of wasp
23c2xc7A_



not modelled 15.4 21
PDB header:rna binding protein
Chain: A: PDB Molecule:phosphorylated adapter rna export protein;
PDBTitle: solution structure of phax-rbd in complex with ssrna
24d1o4xa1



not modelled 14.1 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
25c3k0yA_



not modelled 13.8 27
PDB header:toxin
Chain: A: PDB Molecule:putative toxin related protein;
PDBTitle: crystal structure of putative toxin related protein (yp_001303978.1)2 from parabacteroides distasonis atcc 8503 at 2.16 a resolution
26c6cmxA_



not modelled 12.5 18
PDB header:membrane protein
Chain: A: PDB Molecule:teneurin-2;
PDBTitle: human teneurin 2 extra-cellular region
27c4aqqA_



not modelled 12.5 56
PDB header:viral protein
Chain: A: PDB Molecule:l2 protein iii (penton base);
PDBTitle: dodecahedron formed of penton base protein from adenovirus ad3
28c3iynM_



not modelled 12.5 67
PDB header:virus
Chain: M: PDB Molecule:penton base protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
29c2bldD_



not modelled 12.3 67
PDB header:virus
Chain: D: PDB Molecule:penton protein;
PDBTitle: the quasi-atomic model of human adenovirus type 52 capsid (part 1)
30c3eabK_



not modelled 12.1 40
PDB header:cell cycle
Chain: K: PDB Molecule:chmp1b;
PDBTitle: crystal structure of spastin mit in complex with escrt iii
31c4zp3N_



not modelled 12.0 25
PDB header:signaling protein
Chain: N: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
32c4zp3M_



not modelled 11.9 22
PDB header:signaling protein
Chain: M: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
33d3ctaa2



not modelled 10.5 33
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:CTP-dependent riboflavin kinase-like
34d2bj7a1



not modelled 10.1 12
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
35c4zp3R_



not modelled 9.9 25
PDB header:signaling protein
Chain: R: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
36c4zp3O_



not modelled 9.9 25
PDB header:signaling protein
Chain: O: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
37c4zp3Q_



not modelled 9.9 25
PDB header:signaling protein
Chain: Q: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
38d2gg2a1



not modelled 9.2 15
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
39c5bsaF_



not modelled 9.1 67
PDB header:transcription regulator
Chain: F: PDB Molecule:protein spt2 homolog;
PDBTitle: structure of histone h3/h4 in complex with spt2
40c5bs7F_



not modelled 9.1 67
PDB header:transcription regulator
Chain: F: PDB Molecule:protein spt2 homolog;
PDBTitle: structure of histone h3/h4 in complex with spt2
41d1ffgb_



not modelled 8.2 41
Fold:Ferredoxin-like
Superfamily:CheY-binding domain of CheA
Family:CheY-binding domain of CheA
42c2akfB_



not modelled 8.1 38
PDB header:protein binding
Chain: B: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
43c2akfC_



not modelled 8.1 38
PDB header:protein binding
Chain: C: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
44c2akfA_



not modelled 8.1 38
PDB header:protein binding
Chain: A: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
45d2hi6a1



not modelled 8.0 50
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:AF0055-like
46c6ci7A_



not modelled 7.9 10
PDB header:biosynthetic protein
Chain: A: PDB Molecule:ycao;
PDBTitle: the structure of ycao from methanopyrus kandleri bound with amppcp and2 mg2+
47d1j74a_



not modelled 7.9 35
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
48c5h7pB_



not modelled 7.9 30
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 46;
PDBTitle: nmr structure of the vta1ntd-did2(176-204) complex
49c1a0oH_



not modelled 7.8 41
PDB header:chemotaxis
Chain: H: PDB Molecule:chea;
PDBTitle: chey-binding domain of chea in complex with chey
50c4v1af_



not modelled 7.7 16
PDB header:ribosome
Chain: F: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
51d2vbua1



not modelled 7.6 40
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:CTP-dependent riboflavin kinase-like
52c4zp3P_



not modelled 7.6 19
PDB header:signaling protein
Chain: P: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
53c5ydcA_



not modelled 7.6 33
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator rv1828;
PDBTitle: crystal structure of mercury soaked c-terminal domain of rv1828 from2 mycobacterium tuberculosis
54c2bj3D_



not modelled 7.4 13
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
55d2hzaa1



not modelled 7.2 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
56c3g8qA_



not modelled 6.8 56
PDB header:rna binding protein
Chain: A: PDB Molecule:predicted rna-binding protein, contains thump
PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea
57c6honD_



not modelled 6.7 80
PDB header:gene regulation
Chain: D: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
58c6homB_



not modelled 6.7 80
PDB header:gene regulation
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
59c6honB_



not modelled 6.7 80
PDB header:gene regulation
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
60d1efva2



not modelled 6.6 44
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
61c3ol4B_



not modelled 6.6 18
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
62c6homD_



not modelled 6.5 80
PDB header:gene regulation
Chain: D: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
63c4fo7B_



not modelled 6.3 11
PDB header:hydrolase
Chain: B: PDB Molecule:methionine aminopeptidase;
PDBTitle: pseudomonas aeruginosa metap, in mn form
64c5v2gB_



not modelled 6.1 30
PDB header:de novo protein
Chain: B: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
65c5v2gA_



not modelled 6.1 30
PDB header:de novo protein
Chain: A: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
66c5v2gC_



not modelled 6.1 30
PDB header:de novo protein
Chain: C: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
67c3viqC_



not modelled 6.1 13
PDB header:recombination activator
Chain: C: PDB Molecule:swi5-dependent recombination dna repair protein 1;
PDBTitle: crystal structure of swi5-sfr1 complex from fission yeast
68c2gezE_



not modelled 6.1 20
PDB header:hydrolase
Chain: E: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
69c1zvvA_



not modelled 5.9 16
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
70c5nocA_



not modelled 5.9 21
PDB header:dna binding protein
Chain: A: PDB Molecule:stage 0 sporulation protein j;
PDBTitle: solution nmr structure of the c-terminal domain of parb (spo0j)
71d1p94a_



not modelled 5.9 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
72c3mx6A_



not modelled 5.8 4
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase;
PDBTitle: crystal structure of methionine aminopeptidase from rickettsia2 prowazekii bound to methionine
73c2kvcA_



not modelled 5.7 19
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
74c3iacA_



not modelled 5.7 22
PDB header:isomerase
Chain: A: PDB Molecule:glucuronate isomerase;
PDBTitle: 2.2 angstrom crystal structure of glucuronate isomerase from2 salmonella typhimurium.
75c2wuhB_



not modelled 5.6 33
PDB header:receptor/peptide
Chain: B: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
76c2wuhC_



not modelled 5.6 33
PDB header:receptor/peptide
Chain: C: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
77d1efpa2



not modelled 5.3 33
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
78c3u5eS_



not modelled 5.2 21
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l20-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a

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