Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1982c_(-)_2225421_2225840
DateMon Aug 5 13:25:08 BST 2019
Unique Job ID3adf6bdcae64c408
SequenceMIVDTSAVVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.397 Y:40.365 Z:43.261
Model (left) based on template c4xgrG_
Top template information
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
Confidence and coverage
Confidence: 99.9% Coverage: 91%
126 residues ( 91% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xgrG_



99.9 33
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
2d2h1ca1



99.9 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
3c3h87B_



99.9 16
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
4c3zvkC_



99.9 12
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
5c3dboB_



99.8 17
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
6c6nklA_



99.8 15
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
7c5sv2A_



99.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
8d1v96a1



99.8 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
9c5l6mC_



99.8 19
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
10c4chgC_



99.8 18
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
11c3tndC_



99.8 13
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
12d1y82a1



99.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
13c6a7vG_



99.8 18
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
14c5wzfB_



99.8 18
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
15c5x3tD_



99.7 23
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
16c2fe1A_



99.6 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
17d2fe1a1



99.6 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18d1w8ia_



99.3 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19d1v8pa_



98.6 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c1v8pK_



98.6 22
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
21c3ix7A_



not modelled 98.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
22c3i8oA_



not modelled 97.6 17
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
23c2lcqA_



not modelled 97.5 15
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
24d1o4wa_



not modelled 97.0 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25c5f4hF_



not modelled 96.5 9
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26c5ywwA_



not modelled 96.5 9
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
27c2hwwC_



not modelled 94.4 14
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5jpqd_



not modelled 94.3 15
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c5yz4A_



not modelled 93.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
30c6g5iy_



not modelled 89.1 17
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
31c2hwyB_



not modelled 81.5 17
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c4mj7B_



not modelled 72.9 10
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
33c3v32B_



not modelled 71.8 7
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
34c3v33A_



not modelled 67.8 9
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35d1cmwa2



not modelled 61.2 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
36d1tfra2



not modelled 56.3 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37c3zddA_



not modelled 42.6 12
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
38d1xo1a2



not modelled 42.3 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
39c2ihnA_



not modelled 35.7 16
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
40c1jqsB_



not modelled 28.6 23
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog
41c1ut8B_



not modelled 20.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
42c1cmwA_



not modelled 18.1 19
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
43d1qf6a1



not modelled 14.8 7
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
44d1a77a2



not modelled 12.7 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
45c4mitG_



not modelled 12.6 30
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
46c4rodA_



not modelled 12.3 12
PDB header:transcription
Chain: A: PDB Molecule:transcription factor iiib 50 kda subunit;
PDBTitle: human tfiib-related factor 2 (brf2) and tbp bound to trnau1 promoter
47d1o8bb1



not modelled 10.3 8
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
48c5fa0B_



not modelled 10.1 13
PDB header:transferase
Chain: B: PDB Molecule:putative n-acetyl glucosaminyl transferase;
PDBTitle: the structure of the beta-3-deoxy-d-manno-oct-2-ulosonic acid2 transferase domain from wbbb
49d1ul1x2



not modelled 9.7 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
50c6n2bA_



not modelled 9.1 17
PDB header:cell adhesion
Chain: A: PDB Molecule:tapirin;
PDBTitle: the crystal structure of caldicellulosiruptor kristjanssonii tapirin2 c-terminal domain
51c3l7oB_



not modelled 8.9 13
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
52c5j6qA_



not modelled 8.9 27
PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall binding protein cwp8;
PDBTitle: cwp8 from clostridium difficile
53c4x23V_



not modelled 8.1 43
PDB header:structural protein/dna
Chain: V: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle
54c4inmV_



not modelled 8.1 43
PDB header:structural protein/dna
Chain: V: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle
55c4x84C_



not modelled 7.2 12
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from pseudomonas2 aeruginosa
56c3q8lA_



not modelled 6.6 13
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
57c4inmX_



not modelled 6.6 43
PDB header:structural protein/dna
Chain: X: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle
58c4x23X_



not modelled 6.6 43
PDB header:structural protein/dna
Chain: X: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle
59d1lmb3_



not modelled 6.4 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
60d1qd1a1



not modelled 6.3 25
Fold:Ferredoxin-like
Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
61c6iz4G_



not modelled 6.2 9
PDB header:membrane protein
Chain: G: PDB Molecule:trimeric intracellular cation channel type b-b;
PDBTitle: crystal structure analysis of tric counter-ion channels in calcium2 release
62c6f42V_



not modelled 6.0 5
PDB header:transcription
Chain: V: PDB Molecule:transcription factor iiib 70 kda subunit;
PDBTitle: rna polymerase iii closed complex cc1.
63c5egiB_



not modelled 6.0 8
PDB header:membrane protein
Chain: B: PDB Molecule:uncharacterized protein y57a10a.10;
PDBTitle: structure of a trimeric intracellular cation channel from c. elegans2 with bound ca2+
64d1l1ya_



not modelled 5.9 35
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
65c1l2aD_



not modelled 5.9 35
PDB header:hydrolase
Chain: D: PDB Molecule:cellobiohydrolase;
PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome
66d1kmma1



not modelled 5.7 12
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
67c4mitE_



not modelled 5.7 38
PDB header:signaling protein
Chain: E: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
68d2diga1



not modelled 5.5 50
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
69c3iefA_



not modelled 5.5 24
PDB header:transferase, rna binding protein
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna guanine-n1-methyltransferase from bartonella2 henselae using mpcs.
70c5eikA_



not modelled 5.5 10
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein y57a10a.28;
PDBTitle: structure of a trimeric intracellular cation channel from c. elegans2 in the absence of ca2+
71c6iz0A_



not modelled 5.3 9
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric intracellular cation channel type a;
PDBTitle: crystal structure analysis of a eukaryotic membrane protein
72c4el8A_



not modelled 5.1 26
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 48;
PDBTitle: the unliganded structure of c.bescii cela gh48 module

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