Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1984A_(RVBD1984A)_2228684_2228914
DateMon Aug 5 13:25:08 BST 2019
Unique Job ID7bc3db038860ed12
SequenceMTDSVVVRVK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.775 Y:31.886 Z:30.220
Model (left) based on template d1yh5a1
Top template information
Fold:YggU-like
Superfamily:YggU-like
Family:YggU-like
Confidence and coverage
Confidence: 99.9% Coverage: 96%
73 residues ( 96% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1yh5a1



99.9 21
Fold:YggU-like
Superfamily:YggU-like
Family:YggU-like
2d1jrma_



99.9 25
Fold:YggU-like
Superfamily:YggU-like
Family:YggU-like
3c3t5sA_



90.4 13
PDB header:immune system
Chain: A: PDB Molecule:macrophage migration inhibitory factor;
PDBTitle: structure of macrophage migration inhibitory factor from giardia2 lamblia
4d1ffvb2



89.2 18
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
5d1t3qb2



88.1 20
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
6c3hrdF_



88.0 17
PDB header:oxidoreductase
Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase
7d1n62b2



86.9 15
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
8c1n62E_



86.5 15
PDB header:oxidoreductase
Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state
9c1ffvB_



85.3 18
PDB header:hydrolase
Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava
10d1v97a5



83.5 15
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
11d1jrob2



80.7 18
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
12c3eubL_



77.8 15
PDB header:oxidoreductase
Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
13c6cuqB_



77.4 13
PDB header:cytokine
Chain: B: PDB Molecule:macrophage migration inhibitory factor-like protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor-like2 protein (ehmif) from entamoeba histolytica
14c1t3qB_



77.3 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:quinoline 2-oxidoreductase large subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
15d1t6aa_



76.5 29
Fold:TBP-like
Superfamily:Rbstp2229 protein
Family:Rbstp2229 protein
16c2w54F_



75.1 17
PDB header:oxidoreductase
Chain: F: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase from rhodobacter2 capsulatus in complex with bound inhibitor pterin-6-aldehyde
17c1wygA_



74.1 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
18c4uhxA_



73.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidase;
PDBTitle: human aldehyde oxidase in complex with phthalazine and thioridazine
19d2gdga1



73.4 21
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
20d1fima_



73.3 21
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
21c1sb3D_



not modelled 73.1 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
22d1rm6a2



not modelled 72.0 16
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
23c3zyvA_



not modelled 70.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:aox3;
PDBTitle: crystal structure of the mouse liver aldehyde oxidase 3 (maox3)
24c4zohA_



not modelled 70.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase molybdopterin-binding subunit;
PDBTitle: crystal structure of glyceraldehyde oxidoreductase
25c3b64A_



not modelled 68.6 11
PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major
26c5g5hC_



not modelled 67.4 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative xanthine dehydrogenase yagr molybdenum-binding
PDBTitle: escherichia coli periplasmic aldehyde oxidase r440h mutant
27d1gd0a_



not modelled 62.8 21
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
28c2xczA_



not modelled 62.8 12
PDB header:immune system
Chain: A: PDB Molecule:possible atls1-like light-inducible protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor homologue2 from prochlorococcus marinus
29c3fwtA_



not modelled 62.8 7
PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: crystal structure of leishmania major mif2
30c5y6qC_



not modelled 59.2 12
PDB header:oxidoreductase
Chain: C: PDB Molecule:aldehyde oxidase large subunit;
PDBTitle: crystal structure of an aldehyde oxidase from methylobacillus sp.2 ky4400
31c3gacD_



not modelled 58.9 18
PDB header:cytokine
Chain: D: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: structure of mif with hpp
32c4dh4A_



not modelled 56.6 20
PDB header:isomerase
Chain: A: PDB Molecule:mif;
PDBTitle: macrophage migration inhibitory factor toxoplasma gondii
33d1hfoa_



not modelled 52.6 14
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
34d1dpta_



not modelled 49.8 20
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
35c2os5C_



not modelled 49.2 21
PDB header:cytokine
Chain: C: PDB Molecule:acemif;
PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum
36d1uiza_



not modelled 47.2 14
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
37d1b24a1



not modelled 45.8 26
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
38c3hrdE_



not modelled 45.7 20
PDB header:oxidoreductase
Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase
39d1vlba4



not modelled 38.5 11
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
40c4fdxB_



not modelled 37.7 19
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
41c4fazB_



not modelled 36.6 24
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate isomerase protein;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
42d1otfa_



not modelled 35.7 29
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
43c3abfB_



not modelled 35.4 19
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242)
44d1bjpa_



not modelled 33.5 19
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
45c3mb2G_



not modelled 31.9 29
PDB header:isomerase
Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
46c5uifC_



not modelled 31.4 19
PDB header:hydrolase
Chain: C: PDB Molecule:ps01740;
PDBTitle: crystal structure of native ps01740
47d5mdha2



not modelled 30.5 18
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
48c3m20A_



not modelled 30.3 14
PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
49d1y7ta2



not modelled 30.1 21
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
50d2aala1



not modelled 29.9 14
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MSAD-like
51c2op8A_



not modelled 29.6 10
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
52c1vlbA_



not modelled 29.2 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
53d1dgja4



not modelled 29.1 17
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
54c4lkbA_



not modelled 29.0 0
PDB header:isomerase
Chain: A: PDB Molecule:hypothetical protein alr4568/putative 4-oxalocrotonate
PDBTitle: crystal structure of a putative 4-oxalocrotonate tautomerase from2 nostoc sp. pcc 7120
55d1mwwa_



not modelled 28.6 14
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:Hypothetical protein HI1388.1
56c3ry0A_



not modelled 28.3 24
PDB header:isomerase
Chain: A: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway
57c5un4C_



not modelled 27.9 17
PDB header:hydrolase
Chain: C: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of native fused 4-ot
58d1gyxa_



not modelled 27.7 19
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
59c3p1tB_



not modelled 27.2 33
PDB header:transferase
Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution
60c2l0kA_



not modelled 27.0 25
PDB header:transcription
Chain: A: PDB Molecule:stage iii sporulation protein d;
PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna
61c2x4kB_



not modelled 26.7 14
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa)
62c3fkdC_



not modelled 26.4 23
PDB header:lyase
Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase;
PDBTitle: the crystal structure of l-threonine-o-3-phosphate decarboxylase from2 porphyromonas gingivalis
63d7mdha2



not modelled 25.7 15
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
64c5unqF_



not modelled 25.0 19
PDB header:hydrolase
Chain: F: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of pt0534 inactivated by 2-oxo-3-pentynoate
65c2ormA_



not modelled 24.2 19
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase hp0924;
PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori.
66c6dcsB_



not modelled 23.4 10
PDB header:protein transport
Chain: B: PDB Molecule:stage iii sporulation protein af;
PDBTitle: stage iii sporulation protein af (spoiiiaf)
67c1dgjA_



not modelled 23.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774
68d1xdpa2



not modelled 22.5 14
Fold:PHP14-like
Superfamily:PHP14-like
Family:PPK middle domain-like
69c1z2zB_



not modelled 22.4 25
PDB header:lyase
Chain: B: PDB Molecule:probable trna pseudouridine synthase d;
PDBTitle: crystal structure of the putative trna pseudouridine synthase d (trud)2 from methanosarcina mazei, northeast structural genomics target mar1
70d1szwa_



not modelled 21.7 22
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:tRNA pseudouridine synthase TruD
71c2pmpA_



not modelled 21.6 16
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana
72d1w55a2



not modelled 21.6 16
Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
73c1sb7A_



not modelled 20.8 22
PDB header:lyase
Chain: A: PDB Molecule:trna pseudouridine synthase d;
PDBTitle: crystal structure of the e.coli pseudouridine synthase trud
74c3n4dF_



not modelled 20.7 24
PDB header:hydrolase
Chain: F: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of cg10062 inactivated by(r)-oxirane-2-carboxylate
75c3re3B_



not modelled 20.2 13
PDB header:lyase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis
76c5kkpA_



not modelled 20.0 13
PDB header:isomerase
Chain: A: PDB Molecule:pseudouridylate synthase 7;
PDBTitle: crystal structure of human pseudouridylate synthase 7
77d1qbjc_



not modelled 19.9 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
78c2flzC_



not modelled 19.8 4
PDB header:hydrolase
Chain: C: PDB Molecule:cis-3-chloroacrylic acid dehalogenase;
PDBTitle: the x-ray structure of cis-3-chloroacrylic acid dehalogenase (cis-2 caad) with a sulfate ion bound in the active site
79c2kvrA_



not modelled 19.6 11
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7;
PDBTitle: solution nmr structure of human ubiquitin specific protease usp7 ubl2 domain (residues 537-664). nesg target hr4395c/ sgc-toronto
80d1gx1a_



not modelled 19.6 10
Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
81c2oghA_



not modelled 19.1 25
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1;
PDBTitle: solution structure of yeast eif1
82d1civa2



not modelled 19.1 15
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
83d2gxba1



not modelled 18.9 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
84d1vh8a_



not modelled 18.9 19
Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
85d1qgpa_



not modelled 18.7 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
86c3b6nA_



not modelled 18.5 19
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase pv003920 from plasmodium vivax
87d1iv3a_



not modelled 18.3 23
Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
88c3f0gA_



not modelled 18.2 29
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp
89d1b8pa2



not modelled 18.1 24
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
90d1hyha2



not modelled 16.7 16
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
91c1b8vA_



not modelled 16.7 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (malate dehydrogenase);
PDBTitle: malate dehydrogenase from aquaspirillum arcticum
92d1t2da2



not modelled 16.7 16
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
93c3vp7A_



not modelled 16.6 22
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: crystal structure of the beta-alpha repeated, autophagy-specific2 (bara) domain of vps30/atg6
94c2l9fA_



not modelled 16.2 21
PDB header:transferase
Chain: A: PDB Molecule:cale8;
PDBTitle: nmr solution structure of meacp
95d1t0aa_



not modelled 15.8 13
Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
96c5iwyD_



not modelled 15.7 13
PDB header:lyase
Chain: D: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from bacillus subtitis complexed with cmp and mg2+
97c5nufA_



not modelled 15.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase 1, cytoplasmic;
PDBTitle: cytosolic malate dehydrogenase 1
98d2bgxa2



not modelled 15.6 14
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
99c4uupB_



not modelled 15.3 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:malate dehydrogenase;
PDBTitle: reconstructed ancestral trichomonad malate dehydrogenase in2 complex with nadh, so4, and po4

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