Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1989c_(-)_2232747_2233307
DateMon Aug 5 13:25:09 BST 2019
Unique Job IDbdf577cc9190c1f8
SequenceVSDALDEGLV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.179 Y:42.490 Z:38.414
Model (left) based on template c6fkgB_
Top template information
PDB header:toxin
Chain: B: PDB Molecule:rv1989c (mbct);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
Confidence and coverage
Confidence:100.0% Coverage: 98%
183 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6fkgB_
100.0 100
PDB header:toxin
Chain: B: PDB Molecule:rv1989c (mbct);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
2c6d0hA_
98.7 31
PDB header:toxin
Chain: A: PDB Molecule:part: cog5654 (res domain) toxin;
PDBTitle: part: prs adp-ribosylating toxin bound to cognate antitoxin pars
3c6gw6A_
98.6 28
PDB header:toxin
Chain: A: PDB Molecule:res toxin;
PDBTitle: structure of the pseudomonas putida res-xre toxin-antitoxin complex
4c2l4wA_
40.8 44
PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the xanthomonas virb7
5c4tv4C_
30.7 20
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 burkholderia pseudomallei
6c4okmA_
24.4 26
PDB header:transferase
Chain: A: PDB Molecule:terpene synthase metal-binding domain-containing protein;
PDBTitle: selinadiene synthase apo and in complex with diphosphate
7c1dsjA_
24.1 55
PDB header:viral peptide
Chain: A: PDB Molecule:vpr protein;
PDBTitle: nmr solution structure of vpr50_75, 20 structures
8d1y12a1
16.9 18
Fold:Hcp1-like
Superfamily:Hcp1-like
Family:Hcp1-like
9d1hpia_
13.2 47
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
10c3hf3A_
12.4 34
PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
11d1od6a_
11.3 25
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
12d1fn9a_
10.6 31
Fold:Outer capsid protein sigma 3
Superfamily:Outer capsid protein sigma 3
Family:Outer capsid protein sigma 3
13d2ebfx3
10.2 60
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:PMT C-terminal domain like
14d1js2a_
9.8 42
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
15c5ajaB_
9.3 32
PDB header:viral protein
Chain: B: PDB Molecule:vpx protein;
PDBTitle: crystal structure of mandrill samhd1 (amino acid residues 1-114)2 bound to vpx isolated from mandrill and human dcaf1 (amino3 acid residues 1058-1396)
16c3eaaB_
9.3 14
PDB header:unknown function
Chain: B: PDB Molecule:evpc;
PDBTitle: structure of a type six secretion system protein
17c5zkeA_
8.9 70
PDB header:ligase
Chain: A: PDB Molecule:aminoacyl trna synthetase complex-interacting
PDBTitle: crystal structure of n-terminal domain of plasmodium vivax p43 in2 space group p212121
18c2kuoA_
8.9 25
PDB header:metal binding protein
Chain: A: PDB Molecule:aprataxin and pnk-like factor;
PDBTitle: structure and identification of adp-ribose recognition motifs of aplf2 and role in the dna damage response
19c3q3jA_
8.7 45
PDB header:membrane protein/protein binding
Chain: A: PDB Molecule:plexin-a2;
PDBTitle: crystal structure of plexin a2 rbd in complex with rnd1
20c3f3mA_
8.7 25
PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: six crystal structures of two phosphopantetheine adenylyltransferases2 reveal an alternative ligand binding mode and an associated3 structural change
21c3x2dM_
not modelled 8.5 57
PDB header:viral protein/immune system
Chain: M: PDB Molecule:envelope glycoprotein gp1;
PDBTitle: crystal structure of marburg virus gp in complex with the human2 survivor antibody mr78
22c3gr7A_
not modelled 8.5 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal crystal form
23d1z41a1
not modelled 8.2 30
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
24c3ikzA_
not modelled 8.1 25
PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase from2 burkholderia pseudomallei
25d1vlha_
not modelled 7.8 25
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
26c4j8qA_
not modelled 7.8 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a nigd-like protein (bf0700) from bacteroides2 fragilis nctc 9343 at 2.50 a resolution
27c4f3rC_
not modelled 7.5 25
PDB header:transferase
Chain: C: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: structure of phosphopantetheine adenylyltransferase (cbu_0288) from2 coxiella burnetii
28c3csyK_
not modelled 7.3 71
PDB header:immune system/viral protein
Chain: K: PDB Molecule:envelope glycoprotein gp1;
PDBTitle: crystal structure of the trimeric prefusion ebola virus glycoprotein2 in complex with a neutralizing antibody from a human survivor
29d1o6ba_
not modelled 6.9 25
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
30c3s88I_
not modelled 6.8 71
PDB header:immune system/viral protein
Chain: I: PDB Molecule:envelope glycoprotein;
PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6
31c6cgvW_
not modelled 6.8 50
PDB header:virus
Chain: W: PDB Molecule:pre-protein vi;
PDBTitle: revised crystal structure of human adenovirus
32c4ew7A_
not modelled 6.7 60
PDB header:transcription
Chain: A: PDB Molecule:conjugative transfer: regulation;
PDBTitle: the crystal structure of conjugative transfer pas_like domain from2 salmonella enterica subsp. enterica serovar typhimurium
33c4e86L_
not modelled 6.7 67
PDB header:antimicrobial protein
Chain: L: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
34c4e86D_
not modelled 6.7 67
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
35c4e86H_
not modelled 6.7 67
PDB header:antimicrobial protein
Chain: H: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
36c3k0yA_
not modelled 6.7 35
PDB header:toxin
Chain: A: PDB Molecule:putative toxin related protein;
PDBTitle: crystal structure of putative toxin related protein (yp_001303978.1)2 from parabacteroides distasonis atcc 8503 at 2.16 a resolution
37c6qkgB_
not modelled 6.5 38
PDB header:flavoprotein
Chain: B: PDB Molecule:ncr a;
PDBTitle: 2-naphthoyl-coa reductase(ncr)
38c4e86F_
not modelled 6.5 67
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
39c4e86C_
not modelled 6.5 67
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
40c4e83B_
not modelled 6.5 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29nle mutant)
41c4e86G_
not modelled 6.5 67
PDB header:antimicrobial protein
Chain: G: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
42c4e86E_
not modelled 6.5 67
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
43c4e86A_
not modelled 6.5 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
44c4e83A_
not modelled 6.5 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29nle mutant)
45c2mitB_
not modelled 6.5 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: solution structure of oxidized dimeric form of human defensin 5
46d1u69a_
not modelled 6.4 22
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:3-demethylubiquinone-9 3-methyltransferase
47c4e86B_
not modelled 6.4 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
48c4hkhA_
not modelled 6.4 11
PDB header:protein binding
Chain: A: PDB Molecule:putative type vi secretion protein;
PDBTitle: structure of the hcp1 protein from e. coli eaec 042 pathovar, mutants2 n93w-s158w
49c5cujA_
not modelled 6.3 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
50c5cumA_
not modelled 6.3 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
51c5cujD_
not modelled 6.3 67
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
52c5cujF_
not modelled 6.3 67
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
53c5cujE_
not modelled 6.3 67
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
54c5cujB_
not modelled 6.3 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
55c5cumB_
not modelled 6.3 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
56c5cumC_
not modelled 6.3 67
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
57c5cujC_
not modelled 6.3 67
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
58d1oyaa_
not modelled 6.3 10
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
59d1tfua_
not modelled 6.3 25
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
60c2gezE_
not modelled 6.2 15
PDB header:hydrolase
Chain: E: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
61c2mitA_
not modelled 6.2 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of oxidized dimeric form of human defensin 5
62d1vqqa1
not modelled 6.2 22
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
63c5cuiC_
not modelled 6.2 67
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
64c5cuiF_
not modelled 6.2 67
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
65c5cuiA_
not modelled 6.2 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
66c5cuiD_
not modelled 6.2 67
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
67c5cuiB_
not modelled 6.2 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
68c1t3mA_
not modelled 6.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
69c4e82B_
not modelled 6.2 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of monomeric variant of human alpha-defensin 5, hd52 (glu21eme mutant)
70c4e82A_
not modelled 6.2 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of monomeric variant of human alpha-defensin 5, hd52 (glu21eme mutant)
71c5cuiE_
not modelled 6.2 67
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
72c1zmpC_
not modelled 6.1 67
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
73c2lxzA_
not modelled 6.1 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of the antimicrobial peptide human defensin 5
74c1zmpA_
not modelled 6.1 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
75c1zmpB_
not modelled 6.1 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
76c4tmcB_
not modelled 6.0 8
PDB header:flavoprotein
Chain: B: PDB Molecule:old yellow enzyme;
PDBTitle: crystal structure of old yellow enzyme from candida macedoniensis2 aku4588 complexed with p-hydroxybenzaldehyde
77c5ej0A_
not modelled 5.9 43
PDB header:viral protein
Chain: A: PDB Molecule:envelope protein h3;
PDBTitle: the vaccinia virus h3 envelope protein, a major target of neutralizing2 antibodies, exhibits a glycosyltransferase fold and binds udp-glucose
78c4pu6A_
not modelled 5.9 10
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with k+ cations
79d1qjca_
not modelled 5.9 25
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
80d1hlqa_
not modelled 5.8 39
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
81d2bosa_
not modelled 5.7 32
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
82c6ivsA_
not modelled 5.6 67
PDB header:transcription
Chain: A: PDB Molecule:anti-sigma-i factor rsgi1;
PDBTitle: solution structure of the n-terminal domain of the anti-sigma factor2 rsgi1 from clostridium thermocellum
83d1kama_
not modelled 5.6 63
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
84c3nd5D_
not modelled 5.6 38
PDB header:transferase
Chain: D: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase (ppat)2 from enterococcus faecalis
85d1miua5
not modelled 5.5 32
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
86c5h16D_
not modelled 5.5 25
PDB header:transferase
Chain: D: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of the complex of phosphopantetheine2 adenylyltransferase from acinetobacter baumannii with citrate at 2.33 a resolution.
87c3x1mC_
not modelled 5.4 25
PDB header:transferase
Chain: C: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase/ppat from2 pseudomonas aeruginosa with coa
88c6agzA_
not modelled 5.4 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:old yellow enzyme;
PDBTitle: crystal structure of old yellow enzyme from pichia sp. aku4542

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